mRNA_S-dermatodea_contig8214.16411.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8214.16411.1
Unique NamemRNA_S-dermatodea_contig8214.16411.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8214.16411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8214contigS-dermatodea_contig8214:7621..8114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.0686276-CDS-S-dermatodea_contig8214:7620..81121622925329.0686276-CDS-S-dermatodea_contig8214:7620..8112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8214 7621..8112 +
1694079859.1578145-CDS-S-dermatodea_contig8214:7620..81121694079859.1578145-CDS-S-dermatodea_contig8214:7620..8112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8214 7621..8112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8214.16411.1prot_S-dermatodea_contig8214.16411.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8214 7621..8112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8214.16411.1

>prot_S-dermatodea_contig8214.16411.1 ID=prot_S-dermatodea_contig8214.16411.1|Name=mRNA_S-dermatodea_contig8214.16411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp
FRQSEQTTKRKTLAHSFPFLQTPGRCTVPHSHSHLHPKPPPCTGRPSRPP
RAPNNRYLHHPPGHTGRWNTHRRRRSRPTHQRPYRPRSLADRTWGSHHHC
QSRHRTPSGCWRPVHRTPRKTRTCRRRSDQGIRFRDTGLRRCCNRRRCPR
TRPPWAWRGRWPAR
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mRNA from alignment at S-dermatodea_contig8214:7621..8114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8214.16411.1 ID=mRNA_S-dermatodea_contig8214.16411.1|Name=mRNA_S-dermatodea_contig8214.16411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=494bp|location=Sequence derived from alignment at S-dermatodea_contig8214:7621..8114+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCGTCAATCCGAACAAACTACCAAGCGTAAGACGCTTGCCCACTCGTT
CCCCTTCCTCCAGACTCCGGGGCGGTGTACTGTCCCCCACTCCCACTCGC
ACCTCCACCCGAAGCCTCCGCCGTGTACTGGCCGCCCGAGCCGGCCCCCC
CGCGCGCCCAATAATCGTTACCTCCATCACCCCCCTGGGCATACTGGCCG
CTGGAATACCCACCGCCGGCGGCGTTCCCGCCCGACGCACCAGCGGCCTT
ATCGTCCCCGTAGCCTCGCTGACCGGACGTGGGGTAGCCATCACCACTGC
CAGAGTAGGCACCGGACGCCGTCGGGGTGCTGGCGGCCGGTGCATCGTAC
CCCGCGGAAGACCCGTACGTGCCGCCGGCGGTCTGATCAGGGTATCCGCT
TCCGCGATACTGGCTTGAGGCGTTGTTGTAATCGCCGCCGTTGTCCGCGT
ACGCGGCCCCCTTGGGCGTGGAGGGGTCGCTGGCCTGCGCGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8214:7621..8114+

>mRNA_S-dermatodea_contig8214.16411.1 ID=mRNA_S-dermatodea_contig8214.16411.1|Name=mRNA_S-dermatodea_contig8214.16411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig8214:7621..8114+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCGTCAATCCGAACAAACTACCAAGCGTAAGACGCTTGCCCACTCGTT
CCCCTTCCTCCAGACTCCGGGGCGGTGTACTGTCCCCCACTCCCACTCGC
ACCTCCACCCGAAGCCTCCGCCGTGTACTGGCCGCCCGAGCCGGCCCCCC
CGCGCGCCCAATAATCGTTACCTCCATCACCCCCCTGGGCATACTGGCCG
CTGGAATACCCACCGCCGGCGGCGTTCCCGCCCGACGCACCAGCGGCCTT
ATCGTCCCCGTAGCCTCGCTGACCGGACGTGGGGTAGCCATCACCACTGC
CAGAGTAGGCACCGGACGCCGTCGGGGTGCTGGCGGCCGGTGCATCGTAC
CCCGCGGAAGACCCGTACGTGCCGCCGGCGGTCTGATCAGGGTATCCGCT
TCCGCGATACTGGCTTGAGGCGTTGTTGTAATCGCCGCCGTTGTCCGCGT
ACGCGGCCCCCTTGGGCGTGGAGGGGTCGCTGGCCTGCGCGCTTCCGTCA
ATCCGAACAAACTACCAAGCGTAAGACGCTTGCCCACTCGTTCCCCTTCC
TCCAGACTCCGGGGCGGTGTACTGTCCCCCACTCCCACTCGCACCTCCAC
CCGAAGCCTCCGCCGTGTACTGGCCGCCCGAGCCGGCCCCCCCGCGCGCC
CAATAATCGTTACCTCCATCACCCCCCTGGGCATACTGGCCGCTGGAATA
CCCACCGCCGGCGGCGTTCCCGCCCGACGCACCAGCGGCCTTATCGTCCC
CGTAGCCTCGCTGACCGGACGTGGGGTAGCCATCACCACTGCCAGAGTAG
GCACCGGACGCCGTCGGGGTGCTGGCGGCCGGTGCATCGTACCCCGCGGA
AGACCCGTACGTGCCGCCGGCGGTCTGATCAGGGTATCCGCTTCCGCGAT
ACTGGCTTGAGGCGTTGTTGTAATCGCCGCCGTTGTCCGCGTACGCGGCC
CCCTTGGGCGTGGAGGGGTCGCTGGCCTGCGCGC
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