mRNA_S-dermatodea_contig82120.16409.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82120.16409.1
Unique NamemRNA_S-dermatodea_contig82120.16409.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.890e-29
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVME 159
            RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDV+E
Sbjct:  248 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE 300
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.890e-29
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVME 159
            RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDV+E
Sbjct:  342 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVLE 394
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.620e-24
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYASCPVLTPPGWG+ TPML RAL AL DV+E +
Sbjct:   81 RERLFGTGSQTNAYTDFHHTVFYASCPVLTPPGWGKRTPMLPRALEALCDVLEAK 135
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A7S4D551_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D551_HETAK)

HSP 1 Score: 100 bits (250), Expect = 4.770e-24
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYASCP LTPPGWGR   ML RAL AL+DVME R
Sbjct:  176 RERLFGTGSQTNAYTDFHHTVFYASCPCLTPPGWGRRVSMLPRALDALVDVMEAR 230
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A8J9TDL0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TDL0_PHATR)

HSP 1 Score: 83.2 bits (204), Expect = 5.460e-18
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPVL+P G     PML  AL AL+DVME R
Sbjct:   65 RERLFGTGSQTNAYTDFHHTVFYAACPVLSPRG---NQPMLPMALDALVDVMEAR 116
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A7S2WGW2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGW2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.890e-18
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPP-GWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CP L P  G+    PM+  AL AL DVME R
Sbjct:   53 RERLFGTGSQTNAYTDFHHTVFYAACPTLAPASGYHGQQPMMPMALDALADVMEAR 108
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A7S2V8S7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V8S7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 9.940e-18
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPV+TP G     PML  AL AL DVME R
Sbjct:  136 RERLFGTGSQTNAYTDFHHTVFYAACPVVTPRG---NIPMLPMALDALQDVMEAR 187
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: B5Y4R1_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4R1_PHATC)

HSP 1 Score: 83.2 bits (204), Expect = 2.840e-17
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPVL+P G     PML  AL AL+DVME R
Sbjct:   65 RERLFGTGSQTNAYTDFHHTVFYAACPVLSPRG---NQPMLPMALDALVDVMEAR 116
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A1Z5KE45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE45_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 3.890e-17
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CPV TP G     PML  AL AL+DVME R
Sbjct:  173 RERLFGTGSQTNAYTDFHHTVFYAACPVQTPRGG---VPMLPMALDALVDVMEAR 224
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BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.520e-16
Identity = 40/55 (72.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLDVMEVR 165
            RERLFGTGS TNAYTDFHHTVFYA+CP  TP G     PML  AL AL DVME R
Sbjct:  175 RERLFGTGSQTNAYTDFHHTVFYAACPTQTPRG---NAPMLPMALDALCDVMEAR 226
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82120.16409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R1_ECTSI4.890e-2998.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY0_9PHAE4.890e-2998.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA2.620e-2483.64Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A7S4D551_HETAK4.770e-2483.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J9TDL0_PHATR5.460e-1874.55Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S2WGW2_9STRA8.890e-1869.64Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2V8S7_9STRA9.940e-1874.55Hypothetical protein (Fragment) n=2 Tax=Amphiprora... [more]
B5Y4R1_PHATC2.840e-1774.55Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A1Z5KE45_FISSO3.890e-1774.55Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4HUK7_9STRA2.520e-1672.73Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82120contigS-dermatodea_contig82120:225..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue2.7e-24
Seed eggNOG ortholog2880.D7G0R1
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.9946055-CDS-S-dermatodea_contig82120:224..3921622925328.9946055-CDS-S-dermatodea_contig82120:224..392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82120 225..392 -
1694079859.1125677-CDS-S-dermatodea_contig82120:224..3921694079859.1125677-CDS-S-dermatodea_contig82120:224..392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82120 225..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82120.16409.1prot_S-dermatodea_contig82120.16409.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82120 225..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82120.16409.1

>prot_S-dermatodea_contig82120.16409.1 ID=prot_S-dermatodea_contig82120.16409.1|Name=mRNA_S-dermatodea_contig82120.16409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
RERLFGTGSSTNAYTDFHHTVFYASCPVLTPPGWGRPTPMLGRALGALLD
VMEVR*
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mRNA from alignment at S-dermatodea_contig82120:225..392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82120.16409.1 ID=mRNA_S-dermatodea_contig82120.16409.1|Name=mRNA_S-dermatodea_contig82120.16409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig82120:225..392- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGAACGGCTGTTCGGGACCGGGTCGTCGACGAACGCCTATACGGATTT
CCACCATACCGTTTTCTACGCTTCGTGCCCCGTGCTAACCCCGCCGGGAT
GGGGCCGGCCGACGCCTATGCTTGGACGCGCGCTCGGTGCTCTGCTGGAT
GTGATGGAGGTGAGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig82120:225..392-

>mRNA_S-dermatodea_contig82120.16409.1 ID=mRNA_S-dermatodea_contig82120.16409.1|Name=mRNA_S-dermatodea_contig82120.16409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig82120:225..392- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGAACGGCTGTTCGGGACCGGGTCGTCGACGAACGCCTATACGGATTT
CCACCATACCGTTTTCTACGCTTCGTGCCCCGTGCTAACCCCGCCGGGAT
GGGGCCGGCCGACGCCTATGCTTGGACGCGCGCTCGGTGCTCTGCTGGAT
GTGATGGAGGTGAGATGAAGGGAACGGCTGTTCGGGACCGGGTCGTCGAC
GAACGCCTATACGGATTTCCACCATACCGTTTTCTACGCTTCGTGCCCCG
TGCTAACCCCGCCGGGATGGGGCCGGCCGACGCCTATGCTTGGACGCGCG
CTCGGTGCTCTGCTGGATGTGATGGAGGTGAGATGA
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