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Homology
BLAST of mRNA_S-dermatodea_contig821.16405.1 vs. uniprot
Match: D7G3I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I5_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 1.070e-15 Identity = 89/262 (33.97%), Postives = 113/262 (43.13%), Query Frame = 1
Query: 1246 EIYTLAGRKKAG---PLSPAPLVAPSVTEFAWEVVDLSSPLAPHKSLLDRLAGMGTRLPGSCPVLSLAAPFGRPRFPRRPNAF-------SSTRDIATFMRCAAIAPPSTPGTPMEDDGVPYAESPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPVTGGSRKSGQLHWGTLLQ-ASTMPAIELNPAKRA-----------KGVKGAKANANTPLRTSADPQAPPMPLMEGVGGRQVVDPEAYARMFPAGATLNMK 1965
E+Y AGR++ P S A V+ S EF W VDL PLA HK LLDRLAGMGT LPG P S + G R +S D A + A P+T + E P +P++ XXX P V+ R +G HW L+ A + IELNPAKRA KG +GA++ P P+ PM G+ V+D A+ARM+P GA LNMK
Sbjct: 603 EVYAFAGRRQRRRLLPRSSARKVSHSGAEFEWGEVDLQDPLAEHKGLLDRLAGMGTPLPGM-PAPSSGSVVGSARXXXXXXXXXXXXXXVASASDAADGVPYANSRHPATTQSSSESSASP---NPNNMKRVKKKSKNGHASRGVYAPPPXXXAGPPRRPVAVSNVDRAAGVGHWTNLMHSAGNVDPIELNPAKRAAAGAVAAAPGKKGGEGARSVPPPPAPVVEPPK--PMKEFPPGSGKMVLDELAHARMYPGGAVLNMK 858
BLAST of mRNA_S-dermatodea_contig821.16405.1 vs. uniprot
Match: A0A6H5KRH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH2_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.620e-14 Identity = 92/262 (35.11%), Postives = 118/262 (45.04%), Query Frame = 1
Query: 1246 EIYTLAGRKKAG---PLSPAPLVAPSVTEFAWEVVDLSSPLAPHKSLLDRLAGMGTRLPGSCPVLSLAAPFGRPRFPRRPN-------AFSSTRDIATFMRCAAIAPPSTPGTPMEDDGVPYAESPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPVTGGSRKSGQLHWGTLLQ-ASTMPAIELNPAKRA--KGVKGAKANANTPLRTSADPQAPPMPLMEGV---------GGRQVVDPEAYARMFPAGATLNMK 1965
E+YT AGR++ P S A V S EF W VDL PLA HK LLDRLAGMGT LPG P S + G R + +S D A + A P+T + E P +P++ XXXXXXXXX P V+ R +G HW L+ A + IELNP KRA + ++ APP+P++E G+ V+D A+ARM+P GA LNMK
Sbjct: 1008 EVYTFAGRRQRRRLLPRSSARKVWHSGAEFEWAEVDLEDPLAAHKGLLDRLAGMGTPLPG-VPAPSSGSVVGSARXXXXXXXXXXXXXSVASASDAADGVPYANSLHPATTHSSSESSASP---NPNNIKRVKKKSKKGHASRGVYAPXXXXXXXXXRRPVAVSDVDRAAGVGHWTNLMHSAGNVDPIELNPTKRAAAEAXXXXXXXXXXXXXSARSVPAPPVPVVEPPKPMKEFPPGSGKMVLDELAHARMYPGGAVLNMK 1265
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1965 |
| Cds size | 1965 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig821.16405.1 >prot_S-dermatodea_contig821.16405.1 ID=prot_S-dermatodea_contig821.16405.1|Name=mRNA_S-dermatodea_contig821.16405.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=655bp
PARTSPPSSAAPAARATARTSASTRAEELALAAAEKRAKAAELQRAAAEA QLEADAAFELASAELLRAEAEEAEVAPPFEHAPAAETGGADAAVGRAQEE EEEDEAPGNYDVSDSEPDYASDSEPDYAPDSEPDYEPDSEPDYASDSKPE DAFDSEPEESPASAASPAGRYDVSSSEVADESAAATGGEDTEGGVSAMQK ETEEGKYENLPPPRCRYDVSSSEHSSSASEACESEAGGTGSARRELQESP LGRYDVSSSAEGDSSGGGSLTGRSTPAASPLASPLGRYDVSSSSACRTSS PRTPLPSPASSSAGRYGVSSSSSSSDVERYYDLFPQSYSSDSSSDGDFDP EEYNRFFGGALGVGLGFPHPRGLKFGESGAPGLGLGFFRAGGGFPDVDLD SDGDWDSESKSESDGEIYTLAGRKKAGPLSPAPLVAPSVTEFAWEVVDLS SPLAPHKSLLDRLAGMGTRLPGSCPVLSLAAPFGRPRFPRRPNAFSSTRD IATFMRCAAIAPPSTPGTPMEDDGVPYAESPSSSKSRKKRGKGKGVPSPS PSGTGPSPKASTSTPPPVTGGSRKSGQLHWGTLLQASTMPAIELNPAKRA KGVKGAKANANTPLRTSADPQAPPMPLMEGVGGRQVVDPEAYARMFPAGA TLNMK back to topmRNA from alignment at S-dermatodea_contig821:611..4022- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig821.16405.1 ID=mRNA_S-dermatodea_contig821.16405.1|Name=mRNA_S-dermatodea_contig821.16405.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3412bp|location=Sequence derived from alignment at S-dermatodea_contig821:611..4022- (Saccorhiza dermatodea SderLu1190fm monoicous) CCAGCCCGAACATCTCCCCCGTCGTCTGCAGCCCCCGCCGCCCGCGCCAC
CGCCCGCACCTCGGCTTCGACGAGAGCCGAGGAGCTCGCGCTCGCCGCGG
CAGAGAAAAGGGCGAAAGCGGCGGAATTGCAGCGCGCCGCCGCGGAGGCT
CAGCTAGAGGCGGATGCGGCGTTCGAACTCGCCTCGGCCGAGCTTTTGCG
CGCGGAAGCCGAGGAGGCGGAGGTTGCCCCGCCGTTCGAACACGCCCCCG
CTGCCGAAACGGGGGGCGCGGATGCGGCGGTCGGCAGAGCCCAGGAAGAA
GAGGAAGAGGACGAGGCGCCAGGGAATTACGACGTGTCCGATTCGGAGCC
GGATTACGCATCCGATTCGGAGCCGGATTACGCGCCCGATTCGGAGCCGG
ATTACGAGCCCGATTCGGAACCAGACTACGCGTCAGATTCGAAGCCGGAA
GACGCGTTCGATTCGGAGCCAGAAGAAAGCCCTGCTTCCGCCGCGGTGCT
GTCGACCACCCCACCGGCTGCTCGGAGCACCGACGAGGCACCCCTTAGCC
CGTTCGCGCTTCTGCTGGCTCCGATGGACGTGGACGACGGGTCAGCCGAA
GCAGCACCCGCTGGAGGATCCGCCGGTACTAGGGATGCCGAGTCACCCGC
TGGTCGATACGACGTCTCCTCGTCCGAAGTAGCCGACGAGTCTGCCGCCG
CTACCGGCGGCGAGGATACCGAGGGGGGAGTTAGCGCGATGCAGAAGGAA
ACGGAGGAGGGAAAATACGAAAATCTCCCCCCACCGCGTTGCCGGTACGA
CGTGTCTTCGTCCGAACACAGCAGCTCCGCGGTGGAGAGCTGCAGCAGCC
GCCGCAGTGGCAGCAACCGCCGTAGTGACACCAGCCGCCGCAGTGACACC
AGCCGCCGTAGTGGCAACAGCCGCGCGGAGAGCGAGGCGTGCGAGAGCGA
GGCGGGCGGGACCGGGAGCGCGCGGCGGGAGCTGCAGGAGTCCCCCCTCG
GCCGGTACGACGTATCCTCCTCCGCCGAGGGCGACAGCAGCGGTGGGGGG
AGCCTTACCGGGCGAAGCACACCCGCGGCGTCACCCCTGGCGTCCCCGTT
GGGCCGCTACGATGTCTCCTCTTCGTCTGCTTGCCGGACCAGCAGTCCGC
GGACACCTTTGCCGTCACCGGCATCCTCGTCGGCGGGCCGTTACGGTGTT
TCTTCCTCCTCTTCCTCCTCTGACGGTGGTAGCGATAGCGGTAGCGGTCG
CCGATCAGAGTCGAGCGGCGGCTCCCGGACCGCGCGCGGCAGCACCCGGT
GGCGTTCCCCGCGGGGGGCGGCCAAGCGCGGAGTCGAGCGGTACTACGAT
CTGTTCCCCCAGTCGTACTCGTCTGACTCCTCGTCCGACGGCGACTTTGA
CCCCGAAGAGTATAACAGGTTCTTCGGTGGCGCGCTGGGCGTGGGCCTCG
GGTTTCCGCACCCCCGAGGATTGAAGTTCGGGGAGAGCGGTGCTCCTGGC
CTTGGCCTGGGCTTTTTCCGGGCAGGCGGCGGGTTCCCCGACGTGGACCT
CGACTCTGACGGGGATTGGGACTCTGAGTCGAAGTCAGAGTCGGACGGCG
AGATTTACACCCTGGCGGGGCGGAAGAAAGCGGGGCCGTTGTCTCCGGCA
CCCTTGGTGGCGCCTAGCGTCACGGAGTTCGCTTGGGAAGTGGTGGACCT
AAGCAGTCCCCTGGCACCGCACAAGAGTCTGCTGGATCGGCTGGCCGGGA
TGGGCACCCGCCTCCCGGGTTCGTGCCCTGTTCTCTCCTTGGCCGCCCCC
TTTGGCCGGCCCCGCTTCCCACGCCGACCGAACGCCTTTTCGTCGACGCG
CGATATCGCAACCTTCATGCGTTGTGTGGCGAGCCCTCTTTACCCCCACT
CACTCCCAACCTGCCGCCGTGTCCGCTGAGATTGTCCCCACGATGCGACA
GTTTTTCGCCCCCCGTCTGATTCCCGTTCGCCTCTTGTCGTTTGTGCACA
ATATGATACCAGTATGTAGCACCGATTGAACAATCCCTAATCTCCTTTCG
CTCACCCCCTCCCCCCCTCCCTATATGCCTCATATTTTACAGGCATGCCT
CAGCAGGCCGCGATTGCTCCCCCCTCGACACCGGGGACACCCATGGAGGA
TGACGGGGTGCCATACGCAGAAAGCCCATCTTCTTCGAAATCGAGGAAGA
AGAGGGGTAAGGGCAAGGGCGTCCCCTCGCCCTCGCCGAGCGGGACAGGG
CCGTCCCCTAAGGCGAGCACGTCGACGCCCCCCCCGGTGACGGGCGGCAG
CCGCAAGAGCGGGCAGCTGCATTGGGGAACGCTTCTACAAGGTGGGAGGC
ATGAGTTTTTTTCGTTTACTGTTGCGAATTTGTTGTTTTGATTGTTGTGA
AGACTAACGTGTTCCTGGTACTTACTTGTACTTGTAGGTGCTTTTGCTCG
TGGGTTTGGCGTGAGGGGCACGGATTTTGTCTTGTCTTTTTATTATTAGT
GTTATTATTATTTATTTAATTTTGTGGTGTGACTTGACTTGACCGGGGGT
GAGGTTTTGGTGTTGGTTTTGGGTTTGATTTAGACTTTTTGGTAAAGTCA
GCTTTTAGCCCGTCGTGGAAATTTTTGTGACCGCGTGTGACAAGTTTTCA
CCCTAATATCAAGTCAACTATAGACTACAACAGGATACACCGTACTGTAT
ACGCTATCGATCATCACATCTGTTTCTCTCCCCGGTTCTTGCCTTAGCTC
TACATTTTTTTCGCGCCATTCGTTCAGTACCCCCGCTGCTCGCCGATTCG
TCGGATTTCATAACACTATAAACCATCGTACTAAACAAAGAGCACTGCTA
AACAAAGAGCACTGCCAACAAAGAGGGGCGCCTAGTAACGCGTTACCCCT
TCCCCGCAAGTCGCCCCGTGGCGCGATCCCCGCGCGCCAGCCACGCAGCA
AGCCCCCCNNNNNNNNNNTATGATCTGGCTTCTCTCCACCCCACAGGCCG
CCGCGCGGCCCCGCCCCCCGCGCCCCCCCACCCCGCACCCCCCCCCCCCC
CCCCCCCCCCCAAACCTTGACGGTGAGATACCGCCAACAATCCTTGACGG
TGAGATCCCGCCAACAATTGCGTGCTATTTTTCTGTCGTGCACGCTGACC
TCAAGCCGCAAACCACCCCACGCCTGCCATCGACCCCCGACCCCTCTCCA
CAGCGTCTACAATGCCGGCCATCGAGCTGAACCCGGCCAAACGCGCTAAA
GGCGTTAAGGGCGCCAAAGCCAACGCCAACACCCCCCTCCGGACTTCGGC
GGATCCGCAGGCCCCTCCCATGCCGCTCATGGAGGGCGTAGGCGGGCGTC
AGGTTGTGGACCCTGAGGCTTACGCTCGCATGTTCCCCGCCGGCGCGACT
TTGAACATGAAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig821:611..4022- >mRNA_S-dermatodea_contig821.16405.1 ID=mRNA_S-dermatodea_contig821.16405.1|Name=mRNA_S-dermatodea_contig821.16405.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3930bp|location=Sequence derived from alignment at S-dermatodea_contig821:611..4022- (Saccorhiza dermatodea SderLu1190fm monoicous) CCAGCCCGAACATCTCCCCCGTCGTCTGCAGCCCCCGCCGCCCGCGCCAC CGCCCGCACCTCGGCTTCGACGAGAGCCGAGGAGCTCGCGCTCGCCGCGG CAGAGAAAAGGGCGAAAGCGGCGGAATTGCAGCGCGCCGCCGCGGAGGCT CAGCTAGAGGCGGATGCGGCGTTCGAACTCGCCTCGGCCGAGCTTTTGCG CGCGGAAGCCGAGGAGGCGGAGGTTGCCCCGCCGTTCGAACACGCCCCCG CTGCCGAAACGGGGGGCGCGGATGCGGCGGTCGGCAGAGCCCAGGAAGAA GAGGAAGAGGACGAGGCGCCAGGGAATTACGACGTGTCCGATTCGGAGCC GGATTACGCATCCGATTCGGAGCCGGATTACGCGCCCGATTCGGAGCCGG ATTACGAGCCCGATTCGGAACCAGACTACGCGTCAGATTCGAAGCCGGAA GACGCGTTCGATTCGGAGCCAGAAGAAAGCCCTGCTTCCGCCGCGCCAGC CCGAACATCTCCCCCGTCGTCTGCAGCCCCCGCCGCCCGCGCCACCGCCC GCACCTCGGCTTCGACGAGAGCCGAGGAGCTCGCGCTCGCCGCGGCAGAG AAAAGGGCGAAAGCGGCGGAATTGCAGCGCGCCGCCGCGGAGGCTCAGCT AGAGGCGGATGCGGCGTTCGAACTCGCCTCGGCCGAGCTTTTGCGCGCGG AAGCCGAGGAGGCGGAGGTTGCCCCGCCGTTCGAACACGCCCCCGCTGCC GAAACGGGGGGCGCGGATGCGGCGGTCGGCAGAGCCCAGGAAGAAGAGGA AGAGGACGAGGCGCCAGGGAATTACGACGTGTCCGATTCGGAGCCGGATT ACGCATCCGATTCGGAGCCGGATTACGCGCCCGATTCGGAGCCGGATTAC GAGCCCGATTCGGAACCAGACTACGCGTCAGATTCGAAGCCGGAAGACGC GTTCGATTCGGAGCCAGAAGAAAGCCCTGCTTCCGCCGCGTCACCCGCTG GTCGATACGACGTCTCCTCGTCCGAAGTAGCCGACGAGTCTGCCGCCGCT ACCGGCGGCGAGGATACCGAGGGGGGAGTTAGCGCGATGCAGAAGGAAAC GGAGGAGGGAAAATACGAAAATCTCCCCCCACCGCGTTGCCGGTACGACG TGTCTTCGTCCGAACACAGCAGCTCCGCGTCACCCGCTGGTCGATACGAC GTCTCCTCGTCCGAAGTAGCCGACGAGTCTGCCGCCGCTACCGGCGGCGA GGATACCGAGGGGGGAGTTAGCGCGATGCAGAAGGAAACGGAGGAGGGAA AATACGAAAATCTCCCCCCACCGCGTTGCCGGTACGACGTGTCTTCGTCC GAACACAGCAGCTCCGCGAGCGAGGCGTGCGAGAGCGAGGCGGGCGGGAC CGGGAGCGCGCGGCGGGAGCTGCAGGAGTCCCCCCTCGGCCGGTACGACG TATCCTCCTCCGCCGAGGGCGACAGCAGCGGTGGGGGGAGCCTTACCGGG CGAAGCACACCCGCGGCGTCACCCCTGGCGTCCCCGTTGGGCCGCTACGA TGTCTCCTCTTCGTCTGCTTGCCGGACCAGCAGTCCGCGGACACCTTTGC CGTCACCGGCATCCTCGTCGGCGGGCCGTTACGGTGTTTCTTCCTCCTCT TCCTCCTCTGACGAGCGAGGCGTGCGAGAGCGAGGCGGGCGGGACCGGGA GCGCGCGGCGGGAGCTGCAGGAGTCCCCCCTCGGCCGGTACGACGTATCC TCCTCCGCCGAGGGCGACAGCAGCGGTGGGGGGAGCCTTACCGGGCGAAG CACACCCGCGGCGTCACCCCTGGCGTCCCCGTTGGGCCGCTACGATGTCT CCTCTTCGTCTGCTTGCCGGACCAGCAGTCCGCGGACACCTTTGCCGTCA CCGGCATCCTCGTCGGCGGGCCGTTACGGTGTTTCTTCCTCCTCTTCCTC CTCTGACGTCGAGCGGTACTACGATCTGTTCCCCCAGTCGTACTCGTCTG ACTCCTCGTCCGACGGCGACTTTGACCCCGAAGAGTATAACAGGTTCTTC GGTGGCGCGCTGGGCGTGGGCCTCGGGTTTCCGCACCCCCGAGGATTGAA GTTCGGGGAGAGCGGTGCTCCTGGCCTTGGCCTGGGCTTTTTCCGGGCAG GCGGCGGGTTCCCCGACGTGGACCTCGACTCTGACGGGGATTGGGACTCT GAGTCGAAGTCAGAGTCGGACGGCGAGATTTACACCCTGGCGGGGCGGAA GAAAGCGGGGCCGTTGTCTCCGGCACCCTTGGTGGCGCCTAGCGTCACGG AGTTCGCTTGGGAAGTGGTGGACCTAAGCAGTCCCCTGGCACCGCACAAG AGTCTGCTGGATCGGCTGGCCGGGATGGGCACCCGCCTCCCGGGTTCGTG CCCTGTTCTCTCCTTGGCCGCCCCCTTTGGCCGGCCCCGCTTCCCACGCC GACCGAACGCCTTTTCGTCGACGCGCGATATCGCAACCTTCATGCGTTGT TCGAGCGGTACTACGATCTGTTCCCCCAGTCGTACTCGTCTGACTCCTCG TCCGACGGCGACTTTGACCCCGAAGAGTATAACAGGTTCTTCGGTGGCGC GCTGGGCGTGGGCCTCGGGTTTCCGCACCCCCGAGGATTGAAGTTCGGGG AGAGCGGTGCTCCTGGCCTTGGCCTGGGCTTTTTCCGGGCAGGCGGCGGG TTCCCCGACGTGGACCTCGACTCTGACGGGGATTGGGACTCTGAGTCGAA GTCAGAGTCGGACGGCGAGATTTACACCCTGGCGGGGCGGAAGAAAGCGG GGCCGTTGTCTCCGGCACCCTTGGTGGCGCCTAGCGTCACGGAGTTCGCT TGGGAAGTGGTGGACCTAAGCAGTCCCCTGGCACCGCACAAGAGTCTGCT GGATCGGCTGGCCGGGATGGGCACCCGCCTCCCGGGTTCGTGCCCTGTTC TCTCCTTGGCCGCCCCCTTTGGCCGGCCCCGCTTCCCACGCCGACCGAAC GCCTTTTCGTCGACGCGCGATATCGCAACCTTCATGCGTTGTGCCGCGAT TGCTCCCCCCTCGACACCGGGGACACCCATGGAGGATGACGGGGTGCCAT ACGCAGAAAGCCCATCTTCTTCGAAATCGAGGAAGAAGAGGGGTAAGGGC AAGGGCGTCCCCTCGCCCTCGCCGAGCGGGACAGGGCCGTCCCCTAAGGC GAGCACGTCGACGCCCCCCCCGGTGACGGGCGGCAGCCGCAAGAGCGGGC AGCTGCATTGGGGAACGCTTCTACAAGGCCGCGATTGCTCCCCCCTCGAC ACCGGGGACACCCATGGAGGATGACGGGGTGCCATACGCAGAAAGCCCAT CTTCTTCGAAATCGAGGAAGAAGAGGGGTAAGGGCAAGGGCGTCCCCTCG CCCTCGCCGAGCGGGACAGGGCCGTCCCCTAAGGCGAGCACGTCGACGCC CCCCCCGGTGACGGGCGGCAGCCGCAAGAGCGGGCAGCTGCATTGGGGAA CGCTTCTACAAGCGTCTACAATGCCGGCCATCGAGCTGAACCCGGCCAAA CGCGCTAAAGGCGTTAAGGGCGCCAAAGCCAACGCCAACACCCCCCTCCG GACTTCGGCGGATCCGCAGGCCCCTCCCATGCCGCTCATGGAGGGCGTAG GCGGGCGTCAGGTTGTGGACCCTGAGGCTTACGCTCGCATGTTCCCCGCC GGCGCGACTTTGAACATGAAGCGTCTACAATGCCGGCCATCGAGCTGAAC CCGGCCAAACGCGCTAAAGGCGTTAAGGGCGCCAAAGCCAACGCCAACAC CCCCCTCCGGACTTCGGCGGATCCGCAGGCCCCTCCCATGCCGCTCATGG AGGGCGTAGGCGGGCGTCAGGTTGTGGACCCTGAGGCTTACGCTCGCATG TTCCCCGCCGGCGCGACTTTGAACATGAAG back to top
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