mRNA_S-dermatodea_contig819.16384.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig819.16384.1
Unique NamemRNA_S-dermatodea_contig819.16384.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.900e-27
Identity = 59/103 (57.28%), Postives = 81/103 (78.64%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRA 311
            FIYP T AQIAV+L+I   F +LSE   P+AS+WDTWISR GH++VF S+Y+ALLLKV+VS+ERASSQ +FE +LV  +V +++ V  EA V +W+LR++ R+
Sbjct: 1396 FIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREERRS 1498          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.080e-24
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTR 335
            FI+P T AQIA++LM+   F ++SE   P ASKWD W++R GH +VF S+Y+ALLLKV+VS ERA SQ ++E++LV  +  +++AV  E FV++W+L+ + R QE   R R
Sbjct: 1140 FIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVEQR-QEPTTRFR 1249          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.060e-24
Identity = 55/105 (52.38%), Postives = 79/105 (75.24%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQE 317
            FIYP + AQIA++L++   F ++SE   P+AS+WDTWI+R GHV+V  S+YLALLLKV+VS+ER+SSQ +FE +LV+ +V +VV   AE  V++ ALR + R  +
Sbjct: 1496 FIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERRRDQ 1600          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.010e-24
Identity = 51/102 (50.00%), Postives = 78/102 (76.47%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDR 308
            FIYP T AQ+A++LM+  FF +LSE   P++S+W+TW++R GHV+V  S+Y+ALLLKV+VS+ERA SQS+FE +LV  +  ++++V  E FV++   R++ R
Sbjct: 1370 FIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWRQKLR 1471          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.100e-23
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQE-----DGNRTRTHQSTN 353
            F+YP T AQIA++L++ + F VLSE   P+A  WDTW+SR  H +VF S+Y+ALLLKV+VS+E+ SSQ +FE +LV  +  +V+AV  E  V+    R +++ +      D + T T   TN
Sbjct:   40 FMYPNTAAQIAITLIMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVLGCPSRVKEQHEPAPRVGDDSVTMTFSYTN 161          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.290e-23
Identity = 51/103 (49.51%), Postives = 78/103 (75.73%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVIS--WALRKQD 305
            FIYP T AQ+A++LM+  FF +LSE   P++S+W+TW++R GHV+V  S+Y+ALLLKV+VS+ERA SQS+FE +LV  +  ++++V  E FV++  W  R ++
Sbjct: 1311 FIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWTRRLRE 1413          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.560e-23
Identity = 54/98 (55.10%), Postives = 76/98 (77.55%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALR 296
            FIYP T AQIAV+LMI   F ++SEV  P++SKWD W++R GHV+VF S+++ALLLKV+V++E ASSQ +FE +LV  +V +V+ V  EA V++ +LR
Sbjct:  582 FIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVLTSSLR 679          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.100e-22
Identity = 55/121 (45.45%), Postives = 82/121 (67.77%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTRTHQSTNGEPE 365
            FIYP T AQIAV+LMI   F V+SE  +P+ S WD WI+R GHV+VF+S++L LLLKV VS+E  +SQ +FE++LV  +  +V+A+  E  V+ + LR + + +++       Q+TN + E
Sbjct: 1507 FIYPNTAAQIAVTLMIAFAFVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLVAVHALMVMAIVVETVVLFFQLRAELKKEKE-------QTTNADEE 1620          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.850e-21
Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTRTHQSTNGEPEFVSWVATIPA 395
            FIYP T  QIA++L++   F V+SE   P+AS+WDTW+SR GH +VF S+Y+ALLLKV+VS ER  SQ +FEV+LV  +  +++ +  E  V++ AL   +R   DG   R  ++      F S   TIP+
Sbjct: 1951 FIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTVGER---DGPALRFWKAL-----FRSRQETIPS 2073          
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.360e-21
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 3
Query:    3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQE 317
            FIYP T AQIAV+L+I + F ++SE   P+AS+WDTW+ R GH +V  S+Y+ALLLKV+VS+ERASSQ +FE +LV  +V +V  V  E  + + +L  + R Q+
Sbjct:  861 FIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQQ 965          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE7.900e-2757.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G301_ECTSI1.080e-2449.55Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI2.060e-2452.38Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K7Z1_9PHAE7.010e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP34_9PHAE1.100e-2344.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI1.290e-2349.51Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LH65_ECTSI1.560e-2355.10Polymorphic outer membrane protein G/I family prot... [more]
D7FTI5_ECTSI2.100e-2245.45Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G5Y7_ECTSI1.850e-2144.27Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2Z8_ECTSI2.360e-2150.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig819contigS-dermatodea_contig819:6523..7086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D8LHQ8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size564
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig819.16384.1prot_S-dermatodea_contig819.16384.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig819 6567..7016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.2138925-UTR-S-dermatodea_contig819:6522..65661622925327.2138925-UTR-S-dermatodea_contig819:6522..6566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig819 6523..6566 +
1694079857.874412-UTR-S-dermatodea_contig819:6522..65661694079857.874412-UTR-S-dermatodea_contig819:6522..6566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig819 6523..6566 +
1622925327.2336323-UTR-S-dermatodea_contig819:7016..70861622925327.2336323-UTR-S-dermatodea_contig819:7016..7086Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig819 7017..7086 +
1694079857.896111-UTR-S-dermatodea_contig819:7016..70861694079857.896111-UTR-S-dermatodea_contig819:7016..7086Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig819 7017..7086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.2239935-CDS-S-dermatodea_contig819:6566..70161622925327.2239935-CDS-S-dermatodea_contig819:6566..7016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig819 6567..7016 +
1694079857.8857374-CDS-S-dermatodea_contig819:6566..70161694079857.8857374-CDS-S-dermatodea_contig819:6566..7016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig819 6567..7016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig819.16384.1

>prot_S-dermatodea_contig819.16384.1 ID=prot_S-dermatodea_contig819.16384.1|Name=mRNA_S-dermatodea_contig819.16384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp
MIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEER
ASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTRTHQ
STNGEPEFVSWVATIPAPSLGRPPSYLSRTRENGAVECDATVVGPIYGV*
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mRNA from alignment at S-dermatodea_contig819:6523..7086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig819.16384.1 ID=mRNA_S-dermatodea_contig819.16384.1|Name=mRNA_S-dermatodea_contig819.16384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig819:6523..7086+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTTATCTACCCGTTAACCGGGGCGCAGATAGCGGTATCTCTGATGATA GAGCTCTTTTTCTGGGTATTATCGGAGGTTTTTGATCCGCATGCCTCTAA GTGGGATACTTGGATCAGTCGTGCGGGACACGTGATCGTCTTCACCAGCA TTTATCTGGCGCTGCTGCTGAAAGTCGAGGTTTCCGAAGAACGCGCAAGC AGCCAGAGCATGTTCGAGGTAATCCTTGTACTAGACAACGTCTTCTTGGT TGTGGCGGTTTTCGCCGAAGCTTTCGTGATTTCCTGGGCGTTACGAAAGC AAGATAGGGCTCAGGAGGATGGCAATCGCACAAGGACCCATCAAAGCACA AATGGTGAGCCCGAATTCGTGAGTTGGGTGGCCACCATCCCTGCGCCGAG TTTGGGACGGCCACCATCATATCTCTCCCGCACGAGAGAAAATGGTGCCG TCGAATGTGACGCCACAGTAGTGGGCCCGATTTACGGCGTTTAAGGCAAA GAAGTAACAAGGTTCGCGTGTTGGGGTCTGGCCGACTGTCGGGAGGACCT TTCTTGAAGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig819:6523..7086+

>mRNA_S-dermatodea_contig819.16384.1 ID=mRNA_S-dermatodea_contig819.16384.1|Name=mRNA_S-dermatodea_contig819.16384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig819:6523..7086+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATAGAGCTCTTTTTCTGGGTATTATCGGAGGTTTTTGATCCGCATGC
CTCTAAGTGGGATACTTGGATCAGTCGTGCGGGACACGTGATCGTCTTCA
CCAGCATTTATCTGGCGCTGCTGCTGAAAGTCGAGGTTTCCGAAGAACGC
GCAAGCAGCCAGAGCATGTTCGAGGTAATCCTTGTACTAGACAACGTCTT
CTTGGTTGTGGCGGTTTTCGCCGAAGCTTTCGTGATTTCCTGGGCGTTAC
GAAAGCAAGATAGGGCTCAGGAGGATGGCAATCGCACAAGGACCCATCAA
AGCACAAATGGTGAGCCCGAATTCGTGAGTTGGGTGGCCACCATCCCTGC
GCCGAGTTTGGGACGGCCACCATCATATCTCTCCCGCACGAGAGAAAATG
GTGCCGTCGAATGTGACGCCACAGTAGTGGGCCCGATTTACGGCGTTTAA
ATGATAGAGCTCTTTTTCTGGGTATTATCGGAGGTTTTTGATCCGCATGC
CTCTAAGTGGGATACTTGGATCAGTCGTGCGGGACACGTGATCGTCTTCA
CCAGCATTTATCTGGCGCTGCTGCTGAAAGTCGAGGTTTCCGAAGAACGC
GCAAGCAGCCAGAGCATGTTCGAGGTAATCCTTGTACTAGACAACGTCTT
CTTGGTTGTGGCGGTTTTCGCCGAAGCTTTCGTGATTTCCTGGGCGTTAC
GAAAGCAAGATAGGGCTCAGGAGGATGGCAATCGCACAAGGACCCATCAA
AGCACAAATGGTGAGCCCGAATTCGTGAGTTGGGTGGCCACCATCCCTGC
GCCGAGTTTGGGACGGCCACCATCATATCTCTCCCGCACGAGAGAAAATG
GTGCCGTCGAATGTGACGCCACAGTAGTGGGCCCGATTTACGGCGTTTAA
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