mRNA_S-dermatodea_contig819.16384.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 116 bits (291), Expect = 7.900e-27 Identity = 59/103 (57.28%), Postives = 81/103 (78.64%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRA 311
FIYP T AQIAV+L+I F +LSE P+AS+WDTWISR GH++VF S+Y+ALLLKV+VS+ERASSQ +FE +LV +V +++ V EA V +W+LR++ R+
Sbjct: 1396 FIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREERRS 1498
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.080e-24 Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTR 335
FI+P T AQIA++LM+ F ++SE P ASKWD W++R GH +VF S+Y+ALLLKV+VS ERA SQ ++E++LV + +++AV E FV++W+L+ + R QE R R
Sbjct: 1140 FIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVEQR-QEPTTRFR 1249
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 109 bits (273), Expect = 2.060e-24 Identity = 55/105 (52.38%), Postives = 79/105 (75.24%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQE 317
FIYP + AQIA++L++ F ++SE P+AS+WDTWI+R GHV+V S+YLALLLKV+VS+ER+SSQ +FE +LV+ +V +VV AE V++ ALR + R +
Sbjct: 1496 FIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERRRDQ 1600
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 108 bits (269), Expect = 7.010e-24 Identity = 51/102 (50.00%), Postives = 78/102 (76.47%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDR 308
FIYP T AQ+A++LM+ FF +LSE P++S+W+TW++R GHV+V S+Y+ALLLKV+VS+ERA SQS+FE +LV + ++++V E FV++ R++ R
Sbjct: 1370 FIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWRQKLR 1471
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.100e-23 Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQE-----DGNRTRTHQSTN 353
F+YP T AQIA++L++ + F VLSE P+A WDTW+SR H +VF S+Y+ALLLKV+VS+E+ SSQ +FE +LV + +V+AV E V+ R +++ + D + T T TN
Sbjct: 40 FMYPNTAAQIAITLIMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVLGCPSRVKEQHEPAPRVGDDSVTMTFSYTN 161
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.290e-23 Identity = 51/103 (49.51%), Postives = 78/103 (75.73%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVIS--WALRKQD 305
FIYP T AQ+A++LM+ FF +LSE P++S+W+TW++R GHV+V S+Y+ALLLKV+VS+ERA SQS+FE +LV + ++++V E FV++ W R ++
Sbjct: 1311 FIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWTRRLRE 1413
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.560e-23 Identity = 54/98 (55.10%), Postives = 76/98 (77.55%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALR 296
FIYP T AQIAV+LMI F ++SEV P++SKWD W++R GHV+VF S+++ALLLKV+V++E ASSQ +FE +LV +V +V+ V EA V++ +LR
Sbjct: 582 FIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVLTSSLR 679
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 103 bits (258), Expect = 2.100e-22 Identity = 55/121 (45.45%), Postives = 82/121 (67.77%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTRTHQSTNGEPE 365
FIYP T AQIAV+LMI F V+SE +P+ S WD WI+R GHV+VF+S++L LLLKV VS+E +SQ +FE++LV + +V+A+ E V+ + LR + + +++ Q+TN + E
Sbjct: 1507 FIYPNTAAQIAVTLMIAFAFVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLVAVHALMVMAIVVETVVLFFQLRAELKKEKE-------QTTNADEE 1620
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.850e-21 Identity = 58/131 (44.27%), Postives = 83/131 (63.36%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQEDGNRTRTHQSTNGEPEFVSWVATIPA 395
FIYP T QIA++L++ F V+SE P+AS+WDTW+SR GH +VF S+Y+ALLLKV+VS ER SQ +FEV+LV + +++ + E V++ AL +R DG R ++ F S TIP+
Sbjct: 1951 FIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTVGER---DGPALRFWKAL-----FRSRQETIPS 2073
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 100 bits (250), Expect = 2.360e-21 Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 3
Query: 3 FIYPLTGAQIAVSLMIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERASSQSMFEVILVLDNVFLVVAVFAEAFVISWALRKQDRAQE 317
FIYP T AQIAV+L+I + F ++SE P+AS+WDTW+ R GH +V S+Y+ALLLKV+VS+ERASSQ +FE +LV +V +V V E + + +L + R Q+
Sbjct: 861 FIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQQ 965 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig819.16384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig819.16384.1 >prot_S-dermatodea_contig819.16384.1 ID=prot_S-dermatodea_contig819.16384.1|Name=mRNA_S-dermatodea_contig819.16384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp MIELFFWVLSEVFDPHASKWDTWISRAGHVIVFTSIYLALLLKVEVSEERback to top mRNA from alignment at S-dermatodea_contig819:6523..7086+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig819.16384.1 ID=mRNA_S-dermatodea_contig819.16384.1|Name=mRNA_S-dermatodea_contig819.16384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig819:6523..7086+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig819:6523..7086+ >mRNA_S-dermatodea_contig819.16384.1 ID=mRNA_S-dermatodea_contig819.16384.1|Name=mRNA_S-dermatodea_contig819.16384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig819:6523..7086+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |