mRNA_S-dermatodea_contig8183.16381.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8183.16381.1
Unique NamemRNA_S-dermatodea_contig8183.16381.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8183.16381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8183contigS-dermatodea_contig8183:4341..6412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size442
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8183.16381.1prot_S-dermatodea_contig8183.16381.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8183 4341..6390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.0177407-CDS-S-dermatodea_contig8183:4340..44031622925327.0177407-CDS-S-dermatodea_contig8183:4340..4403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8183 4341..4403 +
1694079857.7497394-CDS-S-dermatodea_contig8183:4340..44031694079857.7497394-CDS-S-dermatodea_contig8183:4340..4403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8183 4341..4403 +
1622925327.0364244-CDS-S-dermatodea_contig8183:4803..49621622925327.0364244-CDS-S-dermatodea_contig8183:4803..4962Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8183 4804..4962 +
1694079857.7583401-CDS-S-dermatodea_contig8183:4803..49621694079857.7583401-CDS-S-dermatodea_contig8183:4803..4962Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8183 4804..4962 +
1622925327.0480454-CDS-S-dermatodea_contig8183:6192..63901622925327.0480454-CDS-S-dermatodea_contig8183:6192..6390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8183 6193..6390 +
1694079857.7668998-CDS-S-dermatodea_contig8183:6192..63901694079857.7668998-CDS-S-dermatodea_contig8183:6192..6390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8183 6193..6390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925327.0588706-UTR-S-dermatodea_contig8183:6390..64121622925327.0588706-UTR-S-dermatodea_contig8183:6390..6412Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8183 6391..6412 +
1694079857.7764041-UTR-S-dermatodea_contig8183:6390..64121694079857.7764041-UTR-S-dermatodea_contig8183:6390..6412Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8183 6391..6412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8183.16381.1

>prot_S-dermatodea_contig8183.16381.1 ID=prot_S-dermatodea_contig8183.16381.1|Name=mRNA_S-dermatodea_contig8183.16381.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
MRRSRNINANYVEEEEYVSSEPGWKAGSHVPLFPGEGAGGTNRKPAFERG
DQVSLVSGDDGGSSSSGIAPSASQVLSQRGESGTRSGLDRTRTRPSSDGR
ASRAPWSTRRGRRTTRCLSRPRFTGHAGCASGTTRWESG*
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mRNA from alignment at S-dermatodea_contig8183:4341..6412+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8183.16381.1 ID=mRNA_S-dermatodea_contig8183.16381.1|Name=mRNA_S-dermatodea_contig8183.16381.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2072bp|location=Sequence derived from alignment at S-dermatodea_contig8183:4341..6412+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTAGGTCGCGCAACATAAATGCTAACTACGTGGAGGAGGAGGAGTA
CGTCTCCTCGGAGGTAAGCGGCTCGGCGACGTGTCTACGGCGATTCTGTG
ACACGGCTTGGGTAGCGTAGCTTCGGTGTCGAATTTTGTAACCGTTTGCT
AAAGACAGCACGCCGGCGGCTGCTCGACCAAATGGGTGTGAAGAGTTCAC
CAACTTCCAAGTAAATCAACTGTTGCAGGCGTAGCACCTCCAACCGTTGA
CATGGTGGCCATCTGTTTTGGGCTCAGAACTTGTTCCTTTCGGGGCTATG
GTCCCCGCTCGTTGCAGCCATCTTTACCACAGCTCTGCCCTCTGCTGAAT
GCATAACGACCTGTAGTGCTCGAACGCCCATCCCCTCTAACCATACTGCC
CCCACCCTCCCATGCAACATGCTCGTCGTGTTCACCTCCTGTGCTTATCA
TCGACCCCGCAAGCCTGGGTGGAAGGCTGGTAGCCATGTGCCCCTGTTCC
CCGGAGAAGGTGCTGGCGGTACAAACCGCAAGCCCGCGTTCGAGCGTGGG
GACCAGGTGTCCCTGGTCTCTGGGGACGACGGTGGCAGCAGTAGCAGCGG
AATTGCCCCTTCGGCTTCCCAGGTGCTTTTTTCGTCGAAATGTGCAGCGA
AATTGGGACATAGTTTTATGTTTCGCAATTGCTGCCCCCCCCGCCGAAAG
AGAAAAATAAAAAATCCTGGAAACACTGTTTCGGCGAGATCGCAGCAAAT
ATGCAATATTCAAATGCGATGTGACTCGCACCCCGCTCCGACCACTCAAC
AGTACGTAATCCGAAGTAGCAGAAATGGTGCGCGCATTTTTGGCTTGTTT
ATTTAATGTTTGGCAGGAGAAGATGTAAAGCCTAAAAAACACTACTGAGT
ACACCGAGTTGATGAAGCCTCACATGAAATAGCCCTGATCTCCGTGCACG
CCTTTTGCAGAGGTAAGCAGCAGCATTGAGTGATGGTTGTTGTTTGTGTT
CGATTTTCTCACGTCCTTGGTGATGTCCCCTTTTGTTTACATAGGACCGT
TCTACCAATTTTTTGTTGTATTGCAGGGTGTTGATACGTCTTGATTGGGT
TAATTTTAGAAACGCCGCATAAAAAAAACACGAACGAGCGACCGCTGCCA
AAATATCACATCCTTGTGATTTTTTTATTGTTTTCACTAATTCGCTGCGT
TATCAAAAGCAGTGGGTGGACATCCCGGTACCTCTGTAACACAAACCACA
ATCCGCGAGACCCCTCGTATACTTGTACTGCTGCTGTAACATGAGCACCA
AAAAGCGCAGAGTTGAATCTCACCTCGCCCTACTTACCCCCCCCCCCTTG
TTCTAATTGAATTAAGTGGATACAGACTTTCAGTTTTGGTGCCTATATTT
GTAAGCTTTGCGTCGATTTATGTGTGTCATGTTTAAGTTGAAGGTTGAAA
AATCGTGGCGTGTTACGGGTGGCGGACAAGAAAATCCTTCGGCGTGGACG
ATTTCGTGTTGTTTGCTCCCTTGTTTACTTGTCGTGTTGTGCTGCGCCTG
CTAGCTCGGCTGTTGTACTCCTCTTATCATATCGTCACCGTATTACATAT
AGTTTGCCGTCGACAACAACGCCACATTTCCATACTTGGATGAGGCCGGG
TGTTTTTGTGCGGTATGTGACAAAGTGCCGTGTTTCTCCACGTGACAGGG
CAGTTGCACGTGATGGAGCGTGCGCGCCTGCACCAATGTTATTACGTTCG
AATTACTTAACGGAACGTTGCATTCCTCTTCCCCGCCCGTCGCCCGTTGA
CACAATCGCGCGCGCTGCATGTTCCTTGTGGGTTCGTACACCAACCTGGC
AGGTGCTCAGTCAACGGGGCGAGTCTGGAACCAGGTCGGGGCTGGACCGA
ACGAGAACAAGGCCCAGCTCAGACGGAAGGGCGTCCCGGGCACCATGGAG
CACGAGAAGAGGGAGGAGGACGACGAGGTGTCTGAGCCGCCCAAGATTCA
CCGGGCACGCGGGCTGTGCTTCGGGCACGACGCGATGGGAATCGGGGTGA
CCGCGAAGATAAAAAACTTGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8183:4341..6412+

>mRNA_S-dermatodea_contig8183.16381.1 ID=mRNA_S-dermatodea_contig8183.16381.1|Name=mRNA_S-dermatodea_contig8183.16381.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig8183:4341..6412+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTAGGTCGCGCAACATAAATGCTAACTACGTGGAGGAGGAGGAGTA
CGTCTCCTCGGAGATGCGTAGGTCGCGCAACATAAATGCTAACTACGTGG
AGGAGGAGGAGTACGTCTCCTCGGAGCCTGGGTGGAAGGCTGGTAGCCAT
GTGCCCCTGTTCCCCGGAGAAGGTGCTGGCGGTACAAACCGCAAGCCCGC
GTTCGAGCGTGGGGACCAGGTGTCCCTGGTCTCTGGGGACGACGGTGGCA
GCAGTAGCAGCGGAATTGCCCCTTCGGCTTCCCAGCCTGGGTGGAAGGCT
GGTAGCCATGTGCCCCTGTTCCCCGGAGAAGGTGCTGGCGGTACAAACCG
CAAGCCCGCGTTCGAGCGTGGGGACCAGGTGTCCCTGGTCTCTGGGGACG
ACGGTGGCAGCAGTAGCAGCGGAATTGCCCCTTCGGCTTCCCAGGTGCTC
AGTCAACGGGGCGAGTCTGGAACCAGGTCGGGGCTGGACCGAACGAGAAC
AAGGCCCAGCTCAGACGGAAGGGCGTCCCGGGCACCATGGAGCACGAGAA
GAGGGAGGAGGACGACGAGGTGTCTGAGCCGCCCAAGATTCACCGGGCAC
GCGGGCTGTGCTTCGGGCACGACGCGATGGGAATCGGGGTGAGTGCTCAG
TCAACGGGGCGAGTCTGGAACCAGGTCGGGGCTGGACCGAACGAGAACAA
GGCCCAGCTCAGACGGAAGGGCGTCCCGGGCACCATGGAGCACGAGAAGA
GGGAGGAGGACGACGAGGTGTCTGAGCCGCCCAAGATTCACCGGGCACGC
GGGCTGTGCTTCGGGCACGACGCGATGGGAATCGGGGTGA
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