mRNA_S-dermatodea_contig818.16379.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig818.16379.1
Unique NamemRNA_S-dermatodea_contig818.16379.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig818.16379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig818contigS-dermatodea_contig818:3771..7326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.8
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog203908.EGG01794
EggNOG OGs2CY2J@1,2S1HF@2759,2YG7C@29000,3AIB2@33154,3PB7J@4751,3V4R7@5204
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons5
Model size1176
Cds size588
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.8774111-UTR-S-dermatodea_contig818:3770..37791622925326.8774111-UTR-S-dermatodea_contig818:3770..3779Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig818 3771..3779 +
1694079857.6481957-UTR-S-dermatodea_contig818:3770..37791694079857.6481957-UTR-S-dermatodea_contig818:3770..3779Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig818 3771..3779 +
1622925326.9403367-UTR-S-dermatodea_contig818:6152..62041622925326.9403367-UTR-S-dermatodea_contig818:6152..6204Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig818 6153..6204 +
1694079857.7049403-UTR-S-dermatodea_contig818:6152..62041694079857.7049403-UTR-S-dermatodea_contig818:6152..6204Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig818 6153..6204 +
1622925326.9522047-UTR-S-dermatodea_contig818:6799..73261622925326.9522047-UTR-S-dermatodea_contig818:6799..7326Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig818 6800..7326 +
1694079857.7167814-UTR-S-dermatodea_contig818:6799..73261694079857.7167814-UTR-S-dermatodea_contig818:6799..7326Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig818 6800..7326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.8894198-CDS-S-dermatodea_contig818:3779..37971622925326.8894198-CDS-S-dermatodea_contig818:3779..3797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 3780..3797 +
1694079857.6604872-CDS-S-dermatodea_contig818:3779..37971694079857.6604872-CDS-S-dermatodea_contig818:3779..3797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 3780..3797 +
1622925326.90249-CDS-S-dermatodea_contig818:4235..45211622925326.90249-CDS-S-dermatodea_contig818:4235..4521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 4236..4521 +
1694079857.6706858-CDS-S-dermatodea_contig818:4235..45211694079857.6706858-CDS-S-dermatodea_contig818:4235..4521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 4236..4521 +
1622925326.914501-CDS-S-dermatodea_contig818:4928..50341622925326.914501-CDS-S-dermatodea_contig818:4928..5034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 4929..5034 +
1694079857.6813328-CDS-S-dermatodea_contig818:4928..50341694079857.6813328-CDS-S-dermatodea_contig818:4928..5034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 4929..5034 +
1622925326.9264317-CDS-S-dermatodea_contig818:5974..61521622925326.9264317-CDS-S-dermatodea_contig818:5974..6152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 5975..6152 +
1694079857.691771-CDS-S-dermatodea_contig818:5974..61521694079857.691771-CDS-S-dermatodea_contig818:5974..6152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig818 5975..6152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig818.16379.1prot_S-dermatodea_contig818.16379.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig818 3780..6152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig818.16379.1

>prot_S-dermatodea_contig818.16379.1 ID=prot_S-dermatodea_contig818.16379.1|Name=mRNA_S-dermatodea_contig818.16379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=196bp
MDSTREGARVRHLRYLMQRTYSYGALLGTLSCGVIVGRQVLWMSEGQEEF
GRGLNRMFPAERRRPGLVFWDKACERFRFVRVHPQPGWEGTTYMVDGWHF
QGHKQLFCRVHTNPNLTTNPLPWEAGPSGAMRFMWNTSIAESTKSWAHAL
GSFLSSMRPCWIQFVFDQLRTVHNDLLVSKWRVQTHRTKPNIVIF*
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mRNA from alignment at S-dermatodea_contig818:3771..7326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig818.16379.1 ID=mRNA_S-dermatodea_contig818.16379.1|Name=mRNA_S-dermatodea_contig818.16379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3556bp|location=Sequence derived from alignment at S-dermatodea_contig818:3771..7326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTGTTGTATGGATAGTACTCGCGAGGTGAGTGGCTTTCTTAGGGTGCT
TATAGTTGATCGGTCACTTAGATATATATATAGCGCTTCGCGATCCATCC
TCGACCGATAAGTGTTAGTGACTGTAATCTATGAAAACTATTAACCCAAG
GGAGTGCGACGGCGATATTCTTTAGGGGTTTTTTGTGACGCCGCAGCTGC
TGTAACCTTGTCTTGAGAAAAAGACCGTAGGCTCATGTTCGTAAGTAGGA
CGTAATGATAGCGATCGTGTTATGTAGTATGATGAAACGTGAAGTATTTT
GGGACCCATTTTCAAGAACAAAAAGGGTAAAAACTCGCCCTGTTGTAGTA
GCTCGCCCCCCACATTCTGTTAGTACGCTCTCGTGTACGCAAGAGAGCTT
TTAAGTGCTTGGCGTAGTCAACTACCGTGAGTTCTGCCCACTCGTTAAAA
ACCCGTTTCGAACAGGGCGCACGTGTGCGGCACCTCAGGTACTTGATGCA
GCGTACGTACAGCTACGGAGCTCTACTGGGGACGCTCTCGTGCGGTGTTA
TCGTCGGGCGACAGGTGCTTTGGATGAGCGAAGGGCAGGAAGAGTTCGGG
CGGGGCCTCAACCGCATGTTCCCCGCCGAAAGGAGGAGGCCGGGCCTTGT
ATTCTGGGATAAGGCCTGCGAAAGGTTTCGATTCGTTCGAGTTCACCCTC
AACCGGGCTGGGAGGGGACGACGTACATGGTGGACGGTTGGCACTTTCAA
GGTTGAAACGTGTTAAAAGTTGAAGTACGTTTTGTGTAATGTATAATTTT
CGTTACCCTTAAACGCTAAAATAACGAATGTGCAGGTTAGGACGGAATGC
GCGTTGACGAAGGCGTAATGTAGTTCACAATGTAAATAACAACTCTAACC
CTATCTCATATGATTTCGTGGGCGCATGTTTATCATATTGGCGCAAGGGT
TATGCTAATATCAGGCAAAATACATACAGATGAATGCGTACGGTAGGTTT
GTAGTACTGTCGACGGTGTACCCTGCTACGACAGGGAAGGGTTGAGATAA
CGCAAACAAATCTGGACTCCATACCGCGTCTCTCCCACTCATGCCTGCGT
ATCACGTTTTCGCGACACAACACCTTTACCCGCGCACGTCCCGCCCCGCC
CCCTTGAGGCCACAAGCAGCTTTTTTGCCGTGTCCACACTAATCCGAACT
TAACGACGAACCCACTGCCGTGGGAAGCAGGACCATCGGGGGCTATGCGG
TTCATGTGGAACACGTGAGCTATTACGGGACAGTAAAAGGGGAAAGCTGT
ACAGTTTTGAATTTGTGTGTAGACGACTGGACGAAGTTTATATCTGTGGA
TCGGCGCAAGTGTCGAGGGGAATTTTTAGGAATGTGTCCATTGGTACTGA
ACGCGGAGCACTCACAATCGAGGCATTGTTTTCGGACGCCATTAATTTTG
TGACTCCGTACCCCTCGTCCCTCCTCCCCTCACGTGAGCCGATTCTAGTC
CGAGTGTATCACACATCTTCCGTCGCGTATTTGTTGTGCGTTCGGCGCTT
TTGCGATCGCACGTATTACGGAGGTATACAGAGTAATCAGGACCAAATAT
CACGACCACGACTACCCAAGTCTTCCGGCCATGAAAACCCAAGCACCAAA
ACAACAATATAATGAAGAAAAATGCGGACGAGGGCTGGCGTTATACAACA
AGATCGGCCATGAAATCTCGATATTTCCAGCCTAGTTGGACTTGTTAACT
GTGATTCTCCGTAATAGGTTGAATAATCCCCTGTGCGGTACTTGTTGGTA
CTGAAGCCTCCTGAATGTGAAAAATTCGGTTGTCTTTTATGTACCATGAA
CCCGTGCCATATGATTTGTTGTCGCAAACGCAAATGATTATGACGAGGAG
GTGTAATTTTCCAAACAAAACGCAGTCTGGCCCGCGAAAACCCTGCAGAT
TGATCCGTGACGGCGTTGTTGGTACGCGTGGTCTATTTCGGTTTGGAGGC
GACATGCGTTTTACATAAGCCCCGCCCCGACCACCCCGCCCCCCCCCACC
CACCACACAAAACCACCANNNNNNNNNNGGTGTTCATACCGGCTGTCTTT
TTCTTTTTTGGGTGAACAACGTATTTTACAAAACCCCCCCCCCCCCCCCC
CTCCCCCAACCACACACCAACCACAAACCCACCCCCCCTGCATTTTTCCC
CCAGCTCCATAGCCGAAAGCACAAAAAGCTGGGCGCATGCTCTCGGGAGC
TTCCTTTCTTCCATGCGGCCGTGCTGGATCCAGTTCGTCTTCGACCAGTT
GCGTACGGTACACAACGACCTGCTTGTTTCCAAATGGCGGGTGCAAACGC
ACCGTACGAAGCCTAACATCGTCATATTTTGACAATTTACAATGGCGCTG
TACGGTGCCGGTCTACAAGCATGGACTCGCCGAGGTGAATGCATACGATT
AACTGTGTAATGACGTTGTGCCAATGGGGGGGGGGTGTCGGGTGTGGATG
GGCGTAGTATATATTGAAAGTAGGGTACACGTATAGATTGTTTATTCCGT
GTTATTTTAGACTCTTAGTGGCTGGATATACCGAGGACTTCTTAGGTACC
TTCTTCGTATTAATCTTGCTTATACCTGCCTATCTCACGAGTCTCCACAT
TGTCGGATGTCAACTTTAATATCATGTGTACATAGATATATACTTCGAAG
TAACTGTCAACCTCATGTACTTGAACACGTAGCAGGCCTCTGTACGGGGT
TCTGGACTCGTCTATTTTAAATGTGTTGGACGAAGCAAGATACAAGAAAG
GACCGCCGTATAATCTAGTAGTATGCGCTGTCAATATAAAAGCTTTTGGC
ATTGTTGTGTTTTTGGAAGGCAGCACAAGAAGGGTGCATGTGTATGGTTT
AAATACGTCGTATAATGCGTTTGTTGGCGACGCGCGCGCTGGCATACACG
CTATGCGAAGTCTAGACACAACCTTGCGAAACAATATGTTGGGCCCACGA
CTTCTTCCTCTCTAACGTCGCGCGTGCAGGACTCTGCCTCACTCTAGCGC
GGACTACGTCAGGGCCCGTCAACGGTTGAGCAGGGCATATTTGTCGTATC
AACGGGCCGGTTTGTTGTATCTGTCGGTACGATAGTTTGACCGTATTGGT
TGTGCGTGTGCGAGTAATTCACCGTCAATTTATAGAGATTCTCTTATATT
GTTGACGCAGACAATCATGGCGAGTACGGTATTTGTCTGTCGTTCCTACA
TTCGTGTCGTTCATAGTTCGCATGCCCTCAATCTGGGCCCACTACATGCT
TGGATCCGTGCTCAAAATAGTAGGTTGAACTACAAAGTATAACATGTGGG
GGCACTTCATGAATACTTTGCTCTACAGTTTGAGATTATGATGGTGAACA
GTTGTTAGATCTCTTCCTTCACGTATCCATTTCCAGTGCCGACTTTGATC
TTGCCGGCGTGGACGTTTGAGGATTAAAACTCTTTCGAGTGGTAGTATTG
TGTGTGTGGTGTCAATAGTTTGGTGTGGCTTACGATTGGTATGCACAAAA
TATGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig818:3771..7326+

>mRNA_S-dermatodea_contig818.16379.1 ID=mRNA_S-dermatodea_contig818.16379.1|Name=mRNA_S-dermatodea_contig818.16379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig818:3771..7326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATAGTACTCGCGAGATGGATAGTACTCGCGAGGGCGCACGTGTGCG
GCACCTCAGGTACTTGATGCAGCGTACGTACAGCTACGGAGCTCTACTGG
GGACGCTCTCGTGCGGTGTTATCGTCGGGCGACAGGTGCTTTGGATGAGC
GAAGGGCAGGAAGAGTTCGGGCGGGGCCTCAACCGCATGTTCCCCGCCGA
AAGGAGGAGGCCGGGCCTTGTATTCTGGGATAAGGCCTGCGAAAGGTTTC
GATTCGTTCGAGTTCACCCTCAACCGGGCTGGGAGGGGACGACGTACATG
GTGGACGGTTGGCACTTTCAAGGGCGCACGTGTGCGGCACCTCAGGTACT
TGATGCAGCGTACGTACAGCTACGGAGCTCTACTGGGGACGCTCTCGTGC
GGTGTTATCGTCGGGCGACAGGTGCTTTGGATGAGCGAAGGGCAGGAAGA
GTTCGGGCGGGGCCTCAACCGCATGTTCCCCGCCGAAAGGAGGAGGCCGG
GCCTTGTATTCTGGGATAAGGCCTGCGAAAGGTTTCGATTCGTTCGAGTT
CACCCTCAACCGGGCTGGGAGGGGACGACGTACATGGTGGACGGTTGGCA
CTTTCAAGGCCACAAGCAGCTTTTTTGCCGTGTCCACACTAATCCGAACT
TAACGACGAACCCACTGCCGTGGGAAGCAGGACCATCGGGGGCTATGCGG
TTCATGTGGAACACGCCACAAGCAGCTTTTTTGCCGTGTCCACACTAATC
CGAACTTAACGACGAACCCACTGCCGTGGGAAGCAGGACCATCGGGGGCT
ATGCGGTTCATGTGGAACACCTCCATAGCCGAAAGCACAAAAAGCTGGGC
GCATGCTCTCGGGAGCTTCCTTTCTTCCATGCGGCCGTGCTGGATCCAGT
TCGTCTTCGACCAGTTGCGTACGGTACACAACGACCTGCTTGTTTCCAAA
TGGCGGGTGCAAACGCACCGTACGAAGCCTAACATCGTCATATTTTGACT
CCATAGCCGAAAGCACAAAAAGCTGGGCGCATGCTCTCGGGAGCTTCCTT
TCTTCCATGCGGCCGTGCTGGATCCAGTTCGTCTTCGACCAGTTGCGTAC
GGTACACAACGACCTGCTTGTTTCCAAATGGCGGGTGCAAACGCACCGTA
CGAAGCCTAACATCGTCATATTTTGA
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