mRNA_S-dermatodea_contig8176.16373.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8176.16373.1
Unique NamemRNA_S-dermatodea_contig8176.16373.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: D8LCS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS0_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.430e-35
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 2 
Query:   38 LTKIGRSMVKLGVSACRDVASSPLPGVREQHADRVKSTYDILSRFDEILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRGLH 382
            LT IGR MV+ G++ CR VAS  L  VR+QH + V+++   L R DE+   MR I+Q+E+++V A AA+ G+SGGVTK+++CPNGH +GVGDCGMLNG G C ECG  IGG G H
Sbjct:  156 LTNIGRHMVQKGLNECRTVASISLGSVRQQHEEHVETSMKHLLRLDEV---MRGISQKEVEIVMAVAADPGLSGGVTKYHKCPNGHVYGVGDCGMLNGRGVCPECGLAIGGPGYH 267
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A6H5KZY2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 4.240e-31
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:   35 ALTKIGRSMVKLGVSACRDVASSPLPGVREQHADRVKSTYDILSRFDEILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRGLH 382
            ALT IGR MV+ G++ CR VAS  L  VR+QH + V+++   L   DE    M+ I+Q E+D+V A AA+ G+SGGVT +++CPNGH +GVG CG LNG+  C ECG  IGGRG H
Sbjct:  164 ALTNIGRQMVQEGINECRTVASISLGSVRQQHEEHVETSMKHLLHLDET---MKGISQMEVDIVMAVAADPGLSGGVTTYHKCPNGHVYGVGGCGRLNGSRICPECGLAIGGRGYH 276
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A1B9H8H0_9TREE (Uncharacterized protein n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9H8H0_9TREE)

HSP 1 Score: 73.2 bits (178), Expect = 4.400e-12
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 2 
Query:  164 SRFDEILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRGLH*KSAGRDNS 409
            +RF+E+        +E   +  A   +   +G  T+W +CPNGHA+ VGDCG  N  GTC ECGA IGG G H  S    NS
Sbjct: 2159 TRFEEVT------DEERRSIFNAMGIHAPGNGAATRWMKCPNGHAYAVGDCGQANEGGTCPECGATIGGGGFHGSSFAEGNS 2234
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A1I7ZJG1_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7ZJG1_9BILA)

HSP 1 Score: 67.4 bits (163), Expect = 2.040e-11
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:  143 KSTYDILSRFDEILADMRLITQEEIDMVKAAAA-NTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGG 370
            KS  D L  F+ +L   +LI++E   + K       G+   VT WY+CPNGH +G+GDCG  +  GTC +CGA IGG
Sbjct:   22 KSNADSLDEFNRLL---KLISREVRVLYKEREEIRRGLGRAVTSWYKCPNGHLYGIGDCGRADVVGTCPDCGAEIGG 95
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A1I8A7P8_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8A7P8_9BILA)

HSP 1 Score: 67.0 bits (162), Expect = 5.070e-10
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 2 
Query:  143 KSTYDILSRFDEILADMRLITQEEIDMVKAAAA-NTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGG 370
            KS  D L  F+ +L   +LI++E   + K       G+   VT WY+CPNGH +G+GDCG     GTC +CGA IGG
Sbjct:  363 KSNADSLDEFNRLL---KLISREVRVLYKEREEIRRGLGRAVTSWYKCPNGHLYGIGDCGRAEVVGTCPDCGAEIGG 436
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A292Q7D1_9PEZI (Uncharacterized protein n=1 Tax=Tuber aestivum TaxID=59557 RepID=A0A292Q7D1_9PEZI)

HSP 1 Score: 60.8 bits (146), Expect = 8.300e-8
Identity = 37/90 (41.11%), Postives = 46/90 (51.11%), Query Frame = 2 
Query:  107 LPGVREQHADRVKSTYDILSRFDEILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRG 376
            LPG      DRV     +L+      A    ++ EE  +V  A +    S G  +WY CPNGH F +GDCGM   A  C +CGA IGGRG
Sbjct: 1920 LPGTVGPLKDRVNQARQLLNGPVVFYAP---VSTEEKRLVHLAMSAEFSSTG--RWYTCPNGHPFTIGDCGMAREARPCPDCGATIGGRG 2004
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A2T3A835_9PEZI (C3H1-type domain-containing protein n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T3A835_9PEZI)

HSP 1 Score: 60.5 bits (145), Expect = 1.130e-7
Identity = 41/121 (33.88%), Postives = 60/121 (49.59%), Query Frame = 2 
Query:   26 AMEALTKIGRSMVKLGVSACRDVASSPLPGVREQHADRVKSTYDILSRFDEILADM-RLITQEEIDMVKAAAANTGVSGGVTK----WYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGR 373
            A+E  T   R M++     C    +SP  G R+        T DI + F  + ++    +T EE+  +K A  +   +GG+      WY+C NGHAF +G+CGM      C ECGA IGG+
Sbjct: 1817 AVEEHTDSARKMLQEAKELC---TTSPFEGARQL-------TQDINAAFKLLRSEWYEEVTAEELQSIKLAMVSG--AGGIQTHSGHWYKCQNGHAFAIGECGMPMEQARCPECGAPIGGQ 1925
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A5N5PEC3_9PEZI (C3H1-type domain-containing protein n=1 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5PEC3_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-7
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 2 
Query:  200 ITQEEIDMVKAA--AANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRG 376
            +T EEI  +K A  +   G++     WY+CPNGH F +G+CGM      C ECG+ IGG+G
Sbjct: 1865 VTDEEIKAIKQAMVSGRHGINTHSGHWYKCPNGHTFAIGECGMPMELARCPECGSGIGGQG 1925
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: A0A317SJT8_9PEZI (Uncharacterized protein n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SJT8_9PEZI)

HSP 1 Score: 59.3 bits (142), Expect = 2.820e-7
Identity = 37/98 (37.76%), Postives = 48/98 (48.98%), Query Frame = 2 
Query:   83 CRDVASSPLPGVREQHADRVKSTYDILSRFDEILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRG 376
            C D+    LPG      DRV     +L+    +      ++ EE  +V  A +    S G  +WY CPNGH F +GDCGM   A  C +CGA IGG G
Sbjct: 1740 CEDLCRK-LPGTVGPLRDRVDQARRLLNG---VTVFYTPVSTEEKRLVHLAMSAEFSSTG--RWYTCPNGHPFTIGDCGMARQARPCPDCGATIGGTG 1831
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BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Match: D5GC44_TUBMM (Uncharacterized protein n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5GC44_TUBMM)

HSP 1 Score: 58.9 bits (141), Expect = 3.830e-7
Identity = 35/90 (38.89%), Postives = 45/90 (50.00%), Query Frame = 2 
Query:  107 LPGVREQHADRVKSTYDILSRFDEILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLNGAGTCDECGALIGGRG 376
            LPG       RV     +L       A + +   EE  +V  A +   +S G  +WY CPNGH F +G+CGM N A  C +CGA IGG G
Sbjct: 1735 LPGTIGPLKGRVDQARRLLDGVSVFYAPLSI---EEKRLVHQAMSAEFISTG--RWYTCPNGHPFTIGNCGMANQARPCPDCGATIGGTG 1819
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8176.16373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS0_ECTSI6.430e-3555.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZY2_9PHAE4.240e-3152.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A1B9H8H0_9TREE4.400e-1242.68Uncharacterized protein n=2 Tax=Kwoniella heveanen... [more]
A0A1I7ZJG1_9BILA2.040e-1144.16Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A1I8A7P8_9BILA5.070e-1044.16Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A292Q7D1_9PEZI8.300e-841.11Uncharacterized protein n=1 Tax=Tuber aestivum Tax... [more]
A0A2T3A835_9PEZI1.130e-733.88C3H1-type domain-containing protein n=1 Tax=Coniel... [more]
A0A5N5PEC3_9PEZI1.530e-744.26C3H1-type domain-containing protein n=1 Tax=Conioc... [more]
A0A317SJT8_9PEZI2.820e-737.76Uncharacterized protein n=1 Tax=Tuber magnatum Tax... [more]
D5GC44_TUBMM3.830e-738.89Uncharacterized protein n=1 Tax=Tuber melanosporum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8176contigS-dermatodea_contig8176:4909..6419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size475
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8176.16373.1prot_S-dermatodea_contig8176.16373.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8176 4937..6329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.6826313-UTR-S-dermatodea_contig8176:4908..49361622925326.6826313-UTR-S-dermatodea_contig8176:4908..4936Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 4909..4936 +
1694079857.5114741-UTR-S-dermatodea_contig8176:4908..49361694079857.5114741-UTR-S-dermatodea_contig8176:4908..4936Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 4909..4936 +
1622925326.7266548-UTR-S-dermatodea_contig8176:6329..64191622925326.7266548-UTR-S-dermatodea_contig8176:6329..6419Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 6330..6419 +
1694079857.5554159-UTR-S-dermatodea_contig8176:6329..64191694079857.5554159-UTR-S-dermatodea_contig8176:6329..6419Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 6330..6419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.6943898-CDS-S-dermatodea_contig8176:4936..49691622925326.6943898-CDS-S-dermatodea_contig8176:4936..4969Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 4937..4969 +
1694079857.5220094-CDS-S-dermatodea_contig8176:4936..49691694079857.5220094-CDS-S-dermatodea_contig8176:4936..4969Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 4937..4969 +
1622925326.707891-CDS-S-dermatodea_contig8176:5278..54281622925326.707891-CDS-S-dermatodea_contig8176:5278..5428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 5279..5428 +
1694079857.533709-CDS-S-dermatodea_contig8176:5278..54281694079857.533709-CDS-S-dermatodea_contig8176:5278..5428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 5279..5428 +
1622925326.7174048-CDS-S-dermatodea_contig8176:6155..63291622925326.7174048-CDS-S-dermatodea_contig8176:6155..6329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 6156..6329 +
1694079857.5449038-CDS-S-dermatodea_contig8176:6155..63291694079857.5449038-CDS-S-dermatodea_contig8176:6155..6329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 6156..6329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8176.16373.1

>prot_S-dermatodea_contig8176.16373.1 ID=prot_S-dermatodea_contig8176.16373.1|Name=mRNA_S-dermatodea_contig8176.16373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
MEALTKIGRSMVKLGVSACRDVASSPLPGVREQHADRVKSTYDILSRFDE
ILADMRLITQEEIDMVKAAAANTGVSGGVTKWYRCPNGHAFGVGDCGMLN
GAGTCDECGALIGGRGLH*
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mRNA from alignment at S-dermatodea_contig8176:4909..6419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8176.16373.1 ID=mRNA_S-dermatodea_contig8176.16373.1|Name=mRNA_S-dermatodea_contig8176.16373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1511bp|location=Sequence derived from alignment at S-dermatodea_contig8176:4909..6419+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCCTGCAGCCGGGCAAACCGGCAGCCATGGAGGCGCTTACCAAAATCG
GGAGGAGCATGGTAACCCCCGAAAACTCTTGCACGCGTGAACGTGGCAGC
ATATACGCTTTTGAAGCATGGAACAGCCAGACGAAGGCAGTAGGCAGCAG
CATGCGGGGGGATAAAAAGTTGCCCGAAAATGCGAGAACTGGGTACTTGT
ACTGTAGATATAATAGAGAATAATTTTGTCAGCCACCTTTGGCAAAGTAG
GAAGGAATTACTGGCCATCGGTGATCGATCGTTCGGGGGCAATGCTCCGT
CTACCCGAAGACACGCGCAAAAGTGGAGGACCTCTCCCCCCCCCCCGCGC
CCCCGCACATGCTGTCGAAGGTGAAGCTTGGGGTCTCGGCCTGCCGAGAC
GTTGCTAGCAGCCCACTCCCTGGCGTGCGTGAGCAGCATGCAGACCGCGT
AAAGAGCACATACGACATCCTCTCGCGATTCGACGAGATCCTCGCGGACA
TGCGCCTCATCACGCAAGAGGTGATATTCGATGGCTTGCAGTTTGACAGA
TTGACACAGAGTGGTAGCCTGGGCAAGGGAAGCTCGGCGCGTGGCCCCAC
ACTGAATGTAGAGCTCAACGTGCCTTGCCTGGGCTCGAGCCAGCCTCACT
GACGGCCTGCCCCTTTCCCCCGACCCAATGTGGGCCGGTTGATATATTGA
TATTCAAACTTCAGTTACGACCGACCAGACCGCCATCGGTTGCCGATCCT
GCTCGTGGTCGGACGAGAAATTGAAAAACCTAAGGAGTGATCGATTTCGT
ACGTAAGAGGAAATTAACCCTTTGGGGACTGAGCCTGTTTCCGGGGTGAG
GCCATCTGCCAGCACCGTGCTTCACATCGAACAGGTACAGCACCCGAATG
CGGGCTTCTCCTCACCGTACCCGCGTTGAAAGGGCGATGATAAACCTTCC
ACGCTAAGCTTGCACATGCCCGGTGCTGCTCTTGCGCATGCACCTGTCAC
CGTGATGTACAACAGTAACGGTAGTGACATCAATCGGCGACAAAGTGACA
CAGTCCCAAAAGGGTCAAGACAATGGTCGGAACCAGAGAGGCCATACCAC
GAAACATTGGTCAGCTGAAACAGATGAAAAAACACACCTGAAAAATTTGC
TTCTTCTGCTGGTACTTGTTGTTCGCTCTATTGCCCTTCTCTCTCCCGAC
CACTTCGGTACACATATGCGTTCAAACATGACGTTCCGAGCGAGCAGGAG
ATCGACATGGTGAAGGCAGCTGCTGCCAACACCGGCGTAAGTGGCGGCGT
AACCAAGTGGTACCGATGCCCCAACGGCCACGCGTTCGGTGTGGGAGACT
GCGGCATGCTCAACGGAGCGGGTACCTGCGACGAGTGCGGAGCTCTCATC
GGAGGTCGAGGTCTTCACTAAAAGTCAGCTGGCCGCGACAACTCGTACCG
GCTGAGTTTCTCGACACCGGTATTTTCCTTTCTGGCTCAAACTAAGGTAC
ACACCGGCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8176:4909..6419+

>mRNA_S-dermatodea_contig8176.16373.1 ID=mRNA_S-dermatodea_contig8176.16373.1|Name=mRNA_S-dermatodea_contig8176.16373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig8176:4909..6419+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGCGCTTACCAAAATCGGGAGGAGCATGATGGAGGCGCTTACCAA
AATCGGGAGGAGCATGGTGAAGCTTGGGGTCTCGGCCTGCCGAGACGTTG
CTAGCAGCCCACTCCCTGGCGTGCGTGAGCAGCATGCAGACCGCGTAAAG
AGCACATACGACATCCTCTCGCGATTCGACGAGATCCTCGCGGACATGCG
CCTCATCACGCAAGAGGTGAAGCTTGGGGTCTCGGCCTGCCGAGACGTTG
CTAGCAGCCCACTCCCTGGCGTGCGTGAGCAGCATGCAGACCGCGTAAAG
AGCACATACGACATCCTCTCGCGATTCGACGAGATCCTCGCGGACATGCG
CCTCATCACGCAAGAGGAGATCGACATGGTGAAGGCAGCTGCTGCCAACA
CCGGCGTAAGTGGCGGCGTAACCAAGTGGTACCGATGCCCCAACGGCCAC
GCGTTCGGTGTGGGAGACTGCGGCATGCTCAACGGAGCGGGTACCTGCGA
CGAGTGCGGAGCTCTCATCGGAGGTCGAGGTCTTCACTAAGAGATCGACA
TGGTGAAGGCAGCTGCTGCCAACACCGGCGTAAGTGGCGGCGTAACCAAG
TGGTACCGATGCCCCAACGGCCACGCGTTCGGTGTGGGAGACTGCGGCAT
GCTCAACGGAGCGGGTACCTGCGACGAGTGCGGAGCTCTCATCGGAGGTC
GAGGTCTTCACTAA
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