mRNA_S-dermatodea_contig8176.16372.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8176.16372.1
Unique NamemRNA_S-dermatodea_contig8176.16372.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8176.16372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8176contigS-dermatodea_contig8176:3812..4969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.6377122-CDS-S-dermatodea_contig8176:3811..40301622925326.6377122-CDS-S-dermatodea_contig8176:3811..4030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 3812..4030 +
1694079857.4847488-CDS-S-dermatodea_contig8176:3811..40301694079857.4847488-CDS-S-dermatodea_contig8176:3811..4030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 3812..4030 +
1622925326.6510293-CDS-S-dermatodea_contig8176:4846..49691622925326.6510293-CDS-S-dermatodea_contig8176:4846..4969Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 4847..4969 +
1694079857.5006952-CDS-S-dermatodea_contig8176:4846..49691694079857.5006952-CDS-S-dermatodea_contig8176:4846..4969Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 4847..4969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8176.16372.1prot_S-dermatodea_contig8176.16372.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8176 3812..4969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8176.16372.1

>prot_S-dermatodea_contig8176.16372.1 ID=prot_S-dermatodea_contig8176.16372.1|Name=mRNA_S-dermatodea_contig8176.16372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
MTRTHQKLRSATDGFATTTSAERDATLQLQALNGAFQAQARARRSYDKGV
EALLKAVEVADLARTRRAGAEAKVAFADLQLEGARCIVVSKELVRLQPGK
PAAMEALTKIGRSM
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mRNA from alignment at S-dermatodea_contig8176:3812..4969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8176.16372.1 ID=mRNA_S-dermatodea_contig8176.16372.1|Name=mRNA_S-dermatodea_contig8176.16372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1158bp|location=Sequence derived from alignment at S-dermatodea_contig8176:3812..4969+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCAGGACGCACCAGAAGCTCCGCTCAGCGACAGACGGTTTTGCCAC
CACCACTTCTGCTGAACGAGATGCCACGCTGCAGCTCCAGGCTCTAAATG
GGGCCTTTCAGGCGCAAGCACGCGCGCGGCGCAGCTATGACAAAGGTGTC
GAAGCCCTCCTGAAAGCTGTGGAGGTAGCTGACTTGGCCCGAACCAGGCG
TGCCGGCGCAGAGGCCAAGGTAGGCCTAAAGAGGGCGGGACTCCAATGAA
ATATCAATATTAATACATTTGGGGTCTGTAAGGGGATTCTTCGTTTGACG
CTGGTTCTTGGTTTGTCTCTCGTCTTTTGTGTGGATGGGCCGTTTTTGGT
ACAACCTTCCATGTGTACCTTTTTCAACCCTTTTGTGACCACGCGCGAGA
TTGGGGTGGAATGGCCAATACATGTGATGGTTAAAGAAAACATTTTTAGA
GTTATTACTAACCCTTGTAAAGCTTCCTACTATTGCGTGGTGCGCCCAAG
TAACACTAGCTTCTGAGGGAAGAAGGAAACTAGTATTTAACAAGGTTATG
TCCCAAGGACTAATTTACCTCAACGCCAACAGAGTGCCAAACACCACCTA
AATTGAAAACAGTAAAAACAGAAGAAATAAACAATGCCCAAAAGAAGCAA
AAATAAAACAAAAACCTCAATCAATCGAATCAACCAAAAACCACCGCCAA
ACCGACGCCGCCAGAAAAAATGCATCAAACCTGTTTTGGGCAGTCAGATA
GGTATAATAATGACTCATCGCACCAGACCGACAGTCATCGCTATGACGCG
CTCCACCCATATGCCACTTGTCCTCACAAGCCGAAGATCGTTTGGTGGCG
CCTGCTGCCGTACCCACAGCAGCAAGCTGTCCATCGATGGCAGGCCCACA
TTAATTTGCGCATTTTATGCACCATACGCGATGCTGTACTTTGGCTAAAG
TTGCATGCATCGCAATGCAACAGCCCCCCATAAAATCACCGGATAATCAT
GAGGTTACGCCCCCGCCACCGACTGTATGCAACAGGTGGCCTTCGCGGAC
CTTCAGCTTGAAGGGGCTCGATGCATTGTCGTGAGCAAAGAACTTGTTCG
CCTGCAGCCGGGCAAACCGGCAGCCATGGAGGCGCTTACCAAAATCGGGA
GGAGCATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8176:3812..4969+

>mRNA_S-dermatodea_contig8176.16372.1 ID=mRNA_S-dermatodea_contig8176.16372.1|Name=mRNA_S-dermatodea_contig8176.16372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig8176:3812..4969+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCAGGACGCACCAGAAGCTCCGCTCAGCGACAGACGGTTTTGCCAC
CACCACTTCTGCTGAACGAGATGCCACGCTGCAGCTCCAGGCTCTAAATG
GGGCCTTTCAGGCGCAAGCACGCGCGCGGCGCAGCTATGACAAAGGTGTC
GAAGCCCTCCTGAAAGCTGTGGAGGTAGCTGACTTGGCCCGAACCAGGCG
TGCCGGCGCAGAGGCCAAGATGACCAGGACGCACCAGAAGCTCCGCTCAG
CGACAGACGGTTTTGCCACCACCACTTCTGCTGAACGAGATGCCACGCTG
CAGCTCCAGGCTCTAAATGGGGCCTTTCAGGCGCAAGCACGCGCGCGGCG
CAGCTATGACAAAGGTGTCGAAGCCCTCCTGAAAGCTGTGGAGGTAGCTG
ACTTGGCCCGAACCAGGCGTGCCGGCGCAGAGGCCAAGGTGGCCTTCGCG
GACCTTCAGCTTGAAGGGGCTCGATGCATTGTCGTGAGCAAAGAACTTGT
TCGCCTGCAGCCGGGCAAACCGGCAGCCATGGAGGCGCTTACCAAAATCG
GGAGGAGCATGGTGGCCTTCGCGGACCTTCAGCTTGAAGGGGCTCGATGC
ATTGTCGTGAGCAAAGAACTTGTTCGCCTGCAGCCGGGCAAACCGGCAGC
CATGGAGGCGCTTACCAAAATCGGGAGGAGCATG
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