mRNA_S-dermatodea_contig8176.16374.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8176.16374.1
Unique NamemRNA_S-dermatodea_contig8176.16374.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8176.16374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8176contigS-dermatodea_contig8176:6440..6990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size551
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8176.16374.1prot_S-dermatodea_contig8176.16374.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8176 6460..6798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.493654-UTR-S-dermatodea_contig8176:6439..64591622925326.493654-UTR-S-dermatodea_contig8176:6439..6459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 6440..6459 +
1694079857.4163423-UTR-S-dermatodea_contig8176:6439..64591694079857.4163423-UTR-S-dermatodea_contig8176:6439..6459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 6440..6459 +
1622925326.526434-UTR-S-dermatodea_contig8176:6798..69901622925326.526434-UTR-S-dermatodea_contig8176:6798..6990Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 6799..6990 +
1694079857.436456-UTR-S-dermatodea_contig8176:6798..69901694079857.436456-UTR-S-dermatodea_contig8176:6798..6990Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8176 6799..6990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925326.5112367-CDS-S-dermatodea_contig8176:6459..67981622925326.5112367-CDS-S-dermatodea_contig8176:6459..6798Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 6460..6798 +
1694079857.4261417-CDS-S-dermatodea_contig8176:6459..67981694079857.4261417-CDS-S-dermatodea_contig8176:6459..6798Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8176 6460..6798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8176.16374.1

>prot_S-dermatodea_contig8176.16374.1 ID=prot_S-dermatodea_contig8176.16374.1|Name=mRNA_S-dermatodea_contig8176.16374.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MSHTQQVNLSRRAWQAKPYWDRVSFFADNRDYGNSGDDYKRTAALARQAL
RRTLYRFSTATIPTEKRTAVVGLLFGVKYRAGVFLIRHIWGGLRRTHGSA
SRSYKRQNTSEQ*
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mRNA from alignment at S-dermatodea_contig8176:6440..6990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8176.16374.1 ID=mRNA_S-dermatodea_contig8176.16374.1|Name=mRNA_S-dermatodea_contig8176.16374.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=551bp|location=Sequence derived from alignment at S-dermatodea_contig8176:6440..6990+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACTTCCACGACAAGTTGATGAGCCACACGCAGCAGGTAAACCTCTCG
AGGCGCGCCTGGCAGGCGAAACCGTATTGGGACCGAGTCTCGTTTTTTGC
CGACAATCGTGACTACGGGAATAGCGGAGACGACTACAAGCGCACCGCCG
CGCTTGCACGCCAAGCGTTACGCCGTACCCTGTACCGCTTTTCCACCGCC
ACCATACCCACGGAAAAAAGAACAGCCGTGGTTGGATTGCTGTTCGGTGT
GAAATACCGCGCGGGTGTTTTTTTAATTCGTCATATTTGGGGTGGGCTCC
GTCGCACGCACGGTAGCGCGTCTCGGTCGTATAAACGCCAGAACACGTCG
GAGCAGTAAGGAAGGTCGGATGAAAGAGGCGTTTCGCTTCAAGCCCACGT
CCAAAAAACGGATTTGGCGGATAAAACGCGGTCCGTATACACACTCGATC
ACATGGGGGGCCCAACAGTAGGATAGCAGGGCCGAGAACGTCGCAAAATA
GCTGTCGGGGATGCGCACTACACCTGGCCGTGCGTTGCTTTTTTGCGAGT
C
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Coding sequence (CDS) from alignment at S-dermatodea_contig8176:6440..6990+

>mRNA_S-dermatodea_contig8176.16374.1 ID=mRNA_S-dermatodea_contig8176.16374.1|Name=mRNA_S-dermatodea_contig8176.16374.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig8176:6440..6990+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCACACGCAGCAGGTAAACCTCTCGAGGCGCGCCTGGCAGGCGAA
ACCGTATTGGGACCGAGTCTCGTTTTTTGCCGACAATCGTGACTACGGGA
ATAGCGGAGACGACTACAAGCGCACCGCCGCGCTTGCACGCCAAGCGTTA
CGCCGTACCCTGTACCGCTTTTCCACCGCCACCATACCCACGGAAAAAAG
AACAGCCGTGGTTGGATTGCTGTTCGGTGTGAAATACCGCGCGGGTGTTT
TTTTAATTCGTCATATTTGGGGTGGGCTCCGTCGCACGCACGGTAGCGCG
TCTCGGTCGTATAAACGCCAGAACACGTCGGAGCAGTAAATGAGCCACAC
GCAGCAGGTAAACCTCTCGAGGCGCGCCTGGCAGGCGAAACCGTATTGGG
ACCGAGTCTCGTTTTTTGCCGACAATCGTGACTACGGGAATAGCGGAGAC
GACTACAAGCGCACCGCCGCGCTTGCACGCCAAGCGTTACGCCGTACCCT
GTACCGCTTTTCCACCGCCACCATACCCACGGAAAAAAGAACAGCCGTGG
TTGGATTGCTGTTCGGTGTGAAATACCGCGCGGGTGTTTTTTTAATTCGT
CATATTTGGGGTGGGCTCCGTCGCACGCACGGTAGCGCGTCTCGGTCGTA
TAAACGCCAGAACACGTCGGAGCAGTAA
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