mRNA_S-dermatodea_contig8166.16361.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8166.16361.1
Unique NamemRNA_S-dermatodea_contig8166.16361.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A812VUJ9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VUJ9_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 3.330e-10
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 YLAKMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            + A + R+A+   G+ FLD+GSGTG+A +AA L +P+L  CRG ELL+ LH AAE
Sbjct:  840 FCALLQRVAQPQPGETFLDLGSGTGRALLAAALGFPSLRCCRGYELLEPLHAAAE 894          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A812UV67_SYMPI (ANK1 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UV67_SYMPI)

HSP 1 Score: 59.7 bits (143), Expect = 5.560e-10
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   19 RLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            R+A+   G+ FLD+GSG+G+A +AA L +P L  CRG ELL  LH AAE
Sbjct:   43 RVAQPQPGETFLDLGSGSGRAVLAAALAFPGLRCCRGYELLGPLHAAAE 91          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A813A5Y3_9DINO (ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5Y3_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 1.590e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 YLAKMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            + A + R+A+   G+ FLD+GSGTG+A + A L +P+L  CRG ELL+ LH AAE
Sbjct:  953 FRALLQRVAQPQPGETFLDLGSGTGRAVLVAALGFPSLRCCRGYELLEPLHAAAE 1007          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A1Q9EUD7_SYMMI (Ankyrin-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EUD7_SYMMI)

HSP 1 Score: 61.2 bits (147), Expect = 1.590e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 YLAKMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            + A + R+A+   G+ FLD+GSGTG+A + A L +P+L  CRG ELL+ LH AAE
Sbjct: 1289 FRALLQRVAQPQPGETFLDLGSGTGRAVLVAALGFPSLRCCRGYELLEPLHAAAE 1343          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A7S4IJ33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IJ33_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.910e-8
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   37 DGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            DG VF DIGSGTG+  ++A  L+P + +CRG+ELL G+H+ AE
Sbjct:  157 DGMVFADIGSGTGRLVLSAAALHPGMRLCRGLELLPGIHRLAE 199          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A7S3B7Q8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7Q8_9VIRI)

HSP 1 Score: 57.4 bits (137), Expect = 2.580e-8
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 LAKMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAA 162
            +A++L  A   +GD FLD+GSG+GKA +AA L+ P+L+  RG+E+L  LH  A
Sbjct:  123 VARVLDAAHAREGDTFLDLGSGSGKAVIAAALVRPDLASVRGIEILPELHTEA 175          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A835Z0J1_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    7 AKMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAA 162
            AK+LR  +L  G VF D+GSGTGKA + A L   +   C GVE+L+GLH+AA
Sbjct:  112 AKVLRRLQLPAGGVFYDLGSGTGKAVMVARLTQ-DFERCEGVEILEGLHRAA 162          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A7S2TLP3_9EUKA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TLP3_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 3.700e-7
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   10 KMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            ++LR AK   G+VF D+GSGTGKA VAA LL      C GVELLDGL+  ++
Sbjct:   62 EILRSAKPRKGEVFYDLGSGTGKAVVAAYLLE-GFRECHGVELLDGLYALSD 112          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A7R9UEU9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEU9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.640e-7
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 YLAKMLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAAE 165
            +LA ++R  +   G+VFLD+GSG GKA + A  LYP+L+   G+E+L  L++ A+
Sbjct:   17 WLATLMRQVEPAAGEVFLDLGSGMGKAVLGAAALYPDLAKSAGIEILPKLNRRAK 71          
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Match: A0A7S3V4P1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4P1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.240e-7
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1
Query:   37 DGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAA 162
            DG  FLDIGSG G+  +    L+P + +C+G+E+L GLH A+
Sbjct:   19 DGKTFLDIGSGAGRLVIGVAALHPGIKLCKGLEILPGLHDAS 60          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8166.16361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812VUJ9_9DINO3.330e-1052.73Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812UV67_SYMPI5.560e-1055.10ANK1 protein (Fragment) n=1 Tax=Symbiodinium pilos... [more]
A0A813A5Y3_9DINO1.590e-950.91ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A1Q9EUD7_SYMMI1.590e-950.91Ankyrin-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0... [more]
A0A7S4IJ33_9STRA1.910e-855.81Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3B7Q8_9VIRI2.580e-849.06Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A835Z0J1_9STRA1.910e-753.85Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S2TLP3_9EUKA3.700e-755.77Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7R9UEU9_9STRA4.640e-743.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3V4P1_9STRA6.240e-747.62Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8166contigS-dermatodea_contig8166:8942..9112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.7790854-CDS-S-dermatodea_contig8166:8941..91001622925325.7790854-CDS-S-dermatodea_contig8166:8941..9100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8166 8942..9100 -
1694079856.9149847-CDS-S-dermatodea_contig8166:8941..91001694079856.9149847-CDS-S-dermatodea_contig8166:8941..9100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8166 8942..9100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.789011-UTR-S-dermatodea_contig8166:9100..91121622925325.789011-UTR-S-dermatodea_contig8166:9100..9112Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8166 9101..9112 -
1694079856.9271805-UTR-S-dermatodea_contig8166:9100..91121694079856.9271805-UTR-S-dermatodea_contig8166:9100..9112Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8166 9101..9112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8166.16361.1prot_S-dermatodea_contig8166.16361.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8166 8942..9100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8166.16361.1

>prot_S-dermatodea_contig8166.16361.1 ID=prot_S-dermatodea_contig8166.16361.1|Name=mRNA_S-dermatodea_contig8166.16361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
MLRLAKLDDGDVFLDIGSGTGKACVAAGLLYPNLSVCRGVELLDGLHKAA
EV*
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mRNA from alignment at S-dermatodea_contig8166:8942..9112-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8166.16361.1 ID=mRNA_S-dermatodea_contig8166.16361.1|Name=mRNA_S-dermatodea_contig8166.16361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at S-dermatodea_contig8166:8942..9112- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACCTGGCGAAGATGCTCCGGCTAGCGAAGCTCGATGACGGAGACGTTTT CCTGGACATAGGCTCCGGGACGGGGAAGGCGTGCGTGGCGGCGGGCCTGC TGTACCCAAATCTGTCGGTGTGCAGGGGGGTTGAGCTCTTGGATGGGTTG CACAAGGCGGCAGAGGTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8166:8942..9112-

>mRNA_S-dermatodea_contig8166.16361.1 ID=mRNA_S-dermatodea_contig8166.16361.1|Name=mRNA_S-dermatodea_contig8166.16361.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig8166:8942..9112- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCGGCTAGCGAAGCTCGATGACGGAGACGTTTTCCTGGACATAGG
CTCCGGGACGGGGAAGGCGTGCGTGGCGGCGGGCCTGCTGTACCCAAATC
TGTCGGTGTGCAGGGGGGTTGAGCTCTTGGATGGGTTGCACAAGGCGGCA
GAGGTGTGAATGCTCCGGCTAGCGAAGCTCGATGACGGAGACGTTTTCCT
GGACATAGGCTCCGGGACGGGGAAGGCGTGCGTGGCGGCGGGCCTGCTGT
ACCCAAATCTGTCGGTGTGCAGGGGGGTTGAGCTCTTGGATGGGTTGCAC
AAGGCGGCAGAGGTGTGA
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