mRNA_S-dermatodea_contig81614.16360.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81614.16360.1
Unique NamemRNA_S-dermatodea_contig81614.16360.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81614.16360.1 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.110e-25
Identity = 57/76 (75.00%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    1 QMLVEAMDADDAMGSYDPWGTGKYKGFEIKKEEPRGPEGSEDGGQAT---GP-VSFKKRKGPGNKGKFRKKAREDD 216
            +MLVEAMDADDAMGSYDPWGTGKYKGFEI  + PRGPE    G       GP V+FKKRKGPGNKGKFRKKAR+DD
Sbjct:  366 KMLVEAMDADDAMGSYDPWGTGKYKGFEIANDAPRGPEEEAAGXXXXXXXGPAVAFKKRKGPGNKGKFRKKARDDD 441
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81614.16360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFI0_9PHAE1.110e-2575.00Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81614contigS-dermatodea_contig81614:457..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D7FI35
KEGG rclassRC00001
KEGG koko:K00354,ko:K13220,ko:K21768
KEGG ReactionR00282
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009845,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015030,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0019222,GO:0031047,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0045292,GO:0046483,GO:0048519,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG0150@1,KOG0150@2759
EC1.6.99.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size219
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.723568-UTR-S-dermatodea_contig81614:456..4591622925325.723568-UTR-S-dermatodea_contig81614:456..459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81614 457..459 +
1694079856.8898435-UTR-S-dermatodea_contig81614:456..4591694079856.8898435-UTR-S-dermatodea_contig81614:456..459Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81614 457..459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.7487895-CDS-S-dermatodea_contig81614:459..6781622925325.7487895-CDS-S-dermatodea_contig81614:459..678Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81614 460..678 +
1694079856.9050822-CDS-S-dermatodea_contig81614:459..6781694079856.9050822-CDS-S-dermatodea_contig81614:459..678Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81614 460..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81614.16360.1prot_S-dermatodea_contig81614.16360.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81614 460..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81614.16360.1

>prot_S-dermatodea_contig81614.16360.1 ID=prot_S-dermatodea_contig81614.16360.1|Name=mRNA_S-dermatodea_contig81614.16360.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
MLVEAMDADDAMGSYDPWGTGKYKGFEIKKEEPRGPEGSEDGGQATGPVS
FKKRKGPGNKGKFRKKAREDDN*
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mRNA from alignment at S-dermatodea_contig81614:457..678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81614.16360.1 ID=mRNA_S-dermatodea_contig81614.16360.1|Name=mRNA_S-dermatodea_contig81614.16360.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig81614:457..678+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATGCTGGTAGAGGCTATGGACGCCGACGATGCCATGGGGTCGTACGA
CCCATGGGGCACGGGCAAGTACAAGGGTTTCGAGATAAAGAAGGAGGAGC
CGCGCGGGCCGGAGGGGAGCGAGGATGGGGGGCAAGCGACCGGCCCCGTG
TCGTTTAAGAAGAGAAAAGGTCCTGGGAACAAGGGGAAGTTTAGGAAAAA
AGCTCGCGAGGACGATAATTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig81614:457..678+

>mRNA_S-dermatodea_contig81614.16360.1 ID=mRNA_S-dermatodea_contig81614.16360.1|Name=mRNA_S-dermatodea_contig81614.16360.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig81614:457..678+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGTAGAGGCTATGGACGCCGACGATGCCATGGGGTCGTACGACCC
ATGGGGCACGGGCAAGTACAAGGGTTTCGAGATAAAGAAGGAGGAGCCGC
GCGGGCCGGAGGGGAGCGAGGATGGGGGGCAAGCGACCGGCCCCGTGTCG
TTTAAGAAGAGAAAAGGTCCTGGGAACAAGGGGAAGTTTAGGAAAAAAGC
TCGCGAGGACGATAATTAGATGCTGGTAGAGGCTATGGACGCCGACGATG
CCATGGGGTCGTACGACCCATGGGGCACGGGCAAGTACAAGGGTTTCGAG
ATAAAGAAGGAGGAGCCGCGCGGGCCGGAGGGGAGCGAGGATGGGGGGCA
AGCGACCGGCCCCGTGTCGTTTAAGAAGAGAAAAGGTCCTGGGAACAAGG
GGAAGTTTAGGAAAAAAGCTCGCGAGGACGATAATTAG
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