mRNA_S-dermatodea_contig8161.16359.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8161.16359.1
Unique NamemRNA_S-dermatodea_contig8161.16359.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: D8LEK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.080e-25
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:  205 MSTPPPAKPLSTQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDAF 390
            MS+  P  P +TQEILDKSLKRALGGG +GALAMGINVGTLMWMRTTIN+QLRHGGGTMDAF
Sbjct:    1 MSSTSPKAPPTTQEILDKSLKRALGGGFAGALAMGINVGTLMWMRTTINYQLRHGGGTMDAF 62
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A7R9YEQ5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEQ5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.070e-17
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:   85 HSIVSRRAHLLRESLCR-PVSLTEREFSGSRQIGTGKRYIAMSTPPPAKPLSTQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            HS   +R   L ES+CR  + L     S S+  G             A PLSTQ+IL+K++KRA GGG +GA AM INVGTLMW+RTT+N+Q R+G GT+ A
Sbjct:    2 HSAERQRRSYLLESVCRRALLLLSATMSQSKDAGA------------APPLSTQDILNKAIKRASGGGAAGAAAMFINVGTLMWLRTTVNYQYRYGTGTVTA 91
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A7S2V2G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.340e-13
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:  223 AKP-LSTQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            AKP LST EIL K+  RALGGG++GA+AMG+NV TL+W+RTT+N+Q R+G  T +A
Sbjct:    6 AKPQLSTSEILQKAANRALGGGIAGAMAMGVNVTTLIWLRTTMNYQYRYGTTTTEA 61
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A7S4I1A3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I1A3_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.470e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  220 PAKPLSTQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            PA+  S  E L K+  RA GGGL+GA AM INV TLMWMRTT+NFQ R+G GT +A
Sbjct:   46 PAEKESLSETLKKAAWRASGGGLAGAGAMAINVCTLMWMRTTVNFQYRYGMGTFEA 101
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A7S3PF73_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PF73_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.810e-12
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:  235 STQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            +T+EIL+K+ KRALGGGL GA+AMGI VG+LMW+RTT+N+Q R+G  T  A
Sbjct:   40 TTREILEKAGKRALGGGLPGAMAMGIQVGSLMWLRTTMNYQYRYGTSTTTA 90
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A835Z3L6_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.240e-12
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:  223 AKPLSTQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            A P+  ++IL KS KRALGGG SGA A G+ V +LMW+RTT+N+Q R+GG T+DA
Sbjct:   10 APPVDIKKILSKSAKRALGGGASGAAAAGVQVLSLMWLRTTMNYQYRNGGSTVDA 64
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: W7TMP1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMP1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.400e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  244 EILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHG 369
            EIL KS  RALGGG+SGA AMGINVG LMW+RTT+N+Q R+G
Sbjct:   23 EILKKSAMRALGGGISGAAAMGINVGALMWLRTTVNYQYRNG 64
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A7S1UFD4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFD4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.420e-12
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:  193 RYIAMSTPPPAKPLSTQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            + +A S+   A  L+T++IL K++KRA G    GA AM INVGTLMWMRTT+N+Q R+G GT  A
Sbjct:   95 KAVATSSTTAAPQLTTEQILQKAIKRASGXXXXGAAAMFINVGTLMWMRTTVNYQYRYGTGTFTA 159
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A835ZPC0_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.410e-11
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  235 STQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDA 387
            S  E+L+K+L++ALGGGL+GA AM +NVGTLMW+RT +N+Q RHG  T  A
Sbjct:   11 SASEVLNKALRKALGGGLAGASAMVMNVGTLMWLRTAMNYQYRHGTSTRAA 61
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BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Match: A0A0L0FNE2_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FNE2_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-11
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  235 STQEILDKSLKRALGGGLSGALAMGINVGTLMWMRTTINFQLRHGGGTMDAF 390
            S QEIL  + KRA+GGG+ GA+AMGINV +LMW+RTT+N+Q R+G  T +AF
Sbjct:   17 SLQEILTAAGKRAIGGGVPGAVAMGINVTSLMWLRTTMNYQYRYGTSTTEAF 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8161.16359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK6_ECTSI1.080e-2583.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9YEQ5_9STRA2.070e-1748.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2V2G3_9STRA5.340e-1362.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4I1A3_9EUKA1.470e-1262.50Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A7S3PF73_9STRA1.810e-1264.71Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A835Z3L6_9STRA2.240e-1260.00Mitochondrial carrier domain-containing protein n=... [more]
W7TMP1_9STRA3.400e-1273.81Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S1UFD4_9STRA3.420e-1253.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZPC0_9STRA1.410e-1160.78Mitochondrial carrier domain-containing protein n=... [more]
A0A0L0FNE2_9EUKA1.480e-1161.54Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8161contigS-dermatodea_contig8161:4358..5965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue9.9e-22
Seed eggNOG ortholog2880.D8LEK6
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs28MPG@1,2QU7F@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925325.679918-CDS-S-dermatodea_contig8161:4357..45231622925325.679918-CDS-S-dermatodea_contig8161:4357..4523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8161 4358..4523 +
1694079856.8549254-CDS-S-dermatodea_contig8161:4357..45231694079856.8549254-CDS-S-dermatodea_contig8161:4357..4523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8161 4358..4523 +
1622925325.6894863-CDS-S-dermatodea_contig8161:5739..59631622925325.6894863-CDS-S-dermatodea_contig8161:5739..5963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8161 5740..5963 +
1694079856.8767316-CDS-S-dermatodea_contig8161:5739..59631694079856.8767316-CDS-S-dermatodea_contig8161:5739..5963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8161 5740..5963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8161.16359.1prot_S-dermatodea_contig8161.16359.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8161 4358..5963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8161.16359.1

>prot_S-dermatodea_contig8161.16359.1 ID=prot_S-dermatodea_contig8161.16359.1|Name=mRNA_S-dermatodea_contig8161.16359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
RDRGSSHSRSASYPPTAIPNTRATPLSGHSIVSRRAHLLRESLCRPVSLT
EREFSGSRQIGTGKRYIAMSTPPPAKPLSTQEILDKSLKRALGGGLSGAL
AMGINVGTLMWMRTTINFQLRHGGGTMDAF
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mRNA from alignment at S-dermatodea_contig8161:4358..5965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8161.16359.1 ID=mRNA_S-dermatodea_contig8161.16359.1|Name=mRNA_S-dermatodea_contig8161.16359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1608bp|location=Sequence derived from alignment at S-dermatodea_contig8161:4358..5965+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGATAGGGGCAGCTCACACAGCAGGTCTGCATCATATCCCCCGACAGC
AATACCAAACACCAGAGCAACACCGCTCTCAGGTCACTCCATCGTCTCGC
GACGTGCTCACCTTCTTCGTGAGAGTCTCTGCCGACCGGTCTCGCTGACT
GAGAGAGAGTTTTCAGGTAAGAGCGCATTCCTTGCGGAGCGGCGCAACAC
GCGGTTTGGTTGCTGTACGCTCTGCTTGGGCCAAAACGTGCACGTCAGCA
GATTGATCGAGGTCACCACGAAAGCTTTCAAGCGGCAAAGCGCTAGCCAG
CCACCCCTCTCTGGCCCTGCTGACTCTGACAGCGAGAACGAGAGCGAGAG
AGGGAGATAGAGAGAGAGCCAGCCGTGCTCGCCAACCAGCGGTTCGCTTT
CTGGCTGCCTAGCTGCCTAGTGGTGCAGCGCAGAGGCGTGTAAATAGTTT
CATAGCTGTGGTCGAAATCTTATACATGTATCATCCCGATCAATCGGCCC
GCGCGAGCGCCGCACACTGCCAGACCGCGCACGAAGGTCGGGGCGATTGC
GCCGGGTCCGCGTCCATGCGCGATGCGATAGTGGTGTTCCTCGAGACATG
GGTATCCCACCGTTCTCGCGGCGAGATGGTAGCTTCGTGCGGCATGGTGT
ATGTGTGTGGCCTCGTTAGGGATGGCTTGGATTTCCGGGGGCAAAATAAT
AATACGGGTGAATTTGCCGTCCTTGTGTTCGTACGTGCAGCAGTACCTTT
CATTATACATTATACATCCAATCGTGCTCTCTCTGTCTCTGATGATGAAA
CATCTGGATGAAGACCAGATACTCTGTACTACAGAGTTGTGTCTGTAGGT
ATTGTATCATAGTTGATATTGTATCATACTGCTCTGTCTACGAGCGTTAG
GCCCACCAATGCTTTCTTCTCTCTTCTTTGTCTGCTCCATAGTTTTCCCT
ACACAAAACACGATGGCACGATCTATCTACTTCGTATCAATCTATCTCCA
CAAACTTGTGGAGCCGCCCCATGCCGGCACTTAATCTTGCATACCATAAG
CGGAGAGGCTCGTTCTTCAGTTCCCCGTGATGCCCTTTCCCCCTCCAGTC
CTCCTCTTCTCTCCACCAAACAGAAAACTAAATACCGCTCGCACACCCCA
CCCTTGCCAGGAACTATGACAAGTATAACAAACTCTTCCTTCCTAATTTG
TAATGTTATACGTACAGGGCAAACATGATCGCAGGCGGCATGTAATAGAT
GCATCTACAACGGCATGTACTGTATGTAGCAGCCTAGGAATAGCAGTCCC
CCGATATGGATCTCAAAATCCCAACGACTCGTTGCTGCTGCTGACCTCGT
CGTTGTGCTGTCACGTTCAATCCAATTCGCAGGCTCAAGGCAAATAGGAA
CTGGCAAGCGATACATAGCCATGTCGACGCCTCCGCCAGCAAAGCCGCTG
TCCACTCAGGAGATCCTTGACAAGTCGCTCAAGCGAGCTCTTGGCGGGGG
GCTTTCGGGGGCCCTCGCGATGGGCATCAACGTCGGCACGCTCATGTGGA
TGCGAACCACGATCAACTTCCAGCTGCGGCACGGTGGTGGTACCATGGAT
GCTTTCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8161:4358..5965+

>mRNA_S-dermatodea_contig8161.16359.1 ID=mRNA_S-dermatodea_contig8161.16359.1|Name=mRNA_S-dermatodea_contig8161.16359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig8161:4358..5965+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGATAGGGGCAGCTCACACAGCAGGTCTGCATCATATCCCCCGACAGC
AATACCAAACACCAGAGCAACACCGCTCTCAGGTCACTCCATCGTCTCGC
GACGTGCTCACCTTCTTCGTGAGAGTCTCTGCCGACCGGTCTCGCTGACT
GAGAGAGAGTTTTCAGAGAGATAGGGGCAGCTCACACAGCAGGTCTGCAT
CATATCCCCCGACAGCAATACCAAACACCAGAGCAACACCGCTCTCAGGT
CACTCCATCGTCTCGCGACGTGCTCACCTTCTTCGTGAGAGTCTCTGCCG
ACCGGTCTCGCTGACTGAGAGAGAGTTTTCAGGCTCAAGGCAAATAGGAA
CTGGCAAGCGATACATAGCCATGTCGACGCCTCCGCCAGCAAAGCCGCTG
TCCACTCAGGAGATCCTTGACAAGTCGCTCAAGCGAGCTCTTGGCGGGGG
GCTTTCGGGGGCCCTCGCGATGGGCATCAACGTCGGCACGCTCATGTGGA
TGCGAACCACGATCAACTTCCAGCTGCGGCACGGTGGTGGTACCATGGAT
GCTTTCGCTCAAGGCAAATAGGAACTGGCAAGCGATACATAGCCATGTCG
ACGCCTCCGCCAGCAAAGCCGCTGTCCACTCAGGAGATCCTTGACAAGTC
GCTCAAGCGAGCTCTTGGCGGGGGGCTTTCGGGGGCCCTCGCGATGGGCA
TCAACGTCGGCACGCTCATGTGGATGCGAACCACGATCAACTTCCAGCTG
CGGCACGGTGGTGGTACCATGGATGCTTTC
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