mRNA_S-dermatodea_contig8157.16355.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8157.16355.1 vs. uniprot
Match: A0A6H5KLZ7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE) HSP 1 Score: 358 bits (919), Expect = 3.500e-105 Identity = 286/680 (42.06%), Postives = 371/680 (54.56%), Query Frame = 1
Query: 112 GRLSTEVEGLKSANVQLTQAVAAAKAESSEFRHQAETALKCKQADASGAAAREEVLRADVEQARARADTMSQSLAEAIREQSGLVAETANAKATAEVLEAKIRAAELERAQATGREAERCQALTNQCTPSTVPGPGWRGDLSDSFGDGMEKLLADKLEDASKHISQLRIMLRQEVGRREVAEAEVSEAQGYLNSSRQELGELRHLAWKLEQMGRNSITHIDEKNQAIKQLEEQLQYRGVGAPVGEREGGLAGKS-----RRRSGRKIATLGGREGDREERRGREGEERMPRRRTAGDTESEEFYTGNRSTESGERTASRRECVKNFSGNRNKTQRNLAGKETHKTLLRALSGLRSDLQGVNDQLEEAKAENEGIGRRFAEGVAMRAERLVHALQQAGREKIEPQRQASEAQAEAAKDRESAAELTRVVQGISRILLDNLGVAIPNGLGDRDVVGEEIEGVFEKRLSELSAAVSGAMCRLEERAKHALLGQLPSVPLNVESSTSAGRQDRALTIDGMIWGDRSKEDFNMLAQLQKIEVESELQWLRARLGEMTDKYSRAVAERDNVDSAPSQEAREHAQEEAARAADAHASAIAALEATLAVEKSRCQDLRVRLERKTREHQVELTEADKKLQNKEHELDKVQQALEQTQFTLGRESARRARLEKKYSEMEERGLVSPRSV 2136
GRLSTEVE L+ N L + +A A+A SE + + ALK K+ DA+ AAREE LRA EQARARADTMSQSLAE +LADKL++AS HIS+LR +LRQEV RRE AEAEVSEAQG+ H+D +QA++ LE +L RGV VG GG AG+ R GR + + GGR R E G+E E+G A RR + S + K + L AL+GLR++L+ VN QL +AKAENE R E VA+R ERL A++QAG+++ E QRQASEA+A A DR+SA L RVV+GIS ILLD L V +P L + GE + + E+ L EL+AAV+ A+ +++ERAK A+ P+ P + GR + T+DGM+WG+RSK+DFNMLAQLQKIE ES+LQ L+ARL +MT+KYSRA+A+++ VDS P +E +E A++E ARAA AH+ ++ALE TLA EKS CQDLR++LER+TREHQV L + D++L + RE ARRARL+KKYSE+E+RGLVSPRSV
Sbjct: 298 GRLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE---------------------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGF--------------------------AHMDGNSQAVRHLEGELHARGVAGTVG---GGEAGRGPLREEEREDGRSMLS-GGRARGRSEGGGKE--------------------------EAGLLCARRRRVPQGLS----------SWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQKQAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEAGERGQEMLERGLEELTAAVTDALSKVKERAKQAV----PAQPHGDSLAPGNGRYCMS-TVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQXXXXXXXXXXXXXXXXXDRECARRARLDKKYSELEDRGLVSPRSV 831
BLAST of mRNA_S-dermatodea_contig8157.16355.1 vs. uniprot
Match: D7G4R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI) HSP 1 Score: 301 bits (772), Expect = 9.780e-86 Identity = 237/517 (45.84%), Postives = 285/517 (55.13%), Query Frame = 1
Query: 4 AQFRDAIARMELLLEEEGKDSAAAIKELRDKAVLAKGRLSTEVEGLKSANVQLTQAVAAAKAESSEFRHQAETALKCKQADASGAAAREEVLRADVEQARARADTMSQSLAEAIREQSGLVAETANAKATAEVLEAKIRAAELERAQATGREAERCQALTNQCTPSTVPGPGWRGDLSDSFGDGMEKLLADKLEDASKHISQLRIMLRQEVGRREVAEAEVSEAQGYLNSSRQELGELRHLAWKLEQMGRNSITHIDEKNQAIKQLEEQLQYRGVGAPVGEREG--GLAGKSRRRSGRKIATLGGREGDREERRGREGEERMPRRRTAGDTESEEFYTGNRSTESGERTASRRECVKNFSGNRNKTQRNLAGKETHKTLLRALSGLRSDLQGVNDQLEEAKAENEGIGRRFAEGVAMRAERLVHALQQAGREKIEPQRQASEAQAEAAKDRESAAELTRVVQGISRILLDNLGVAIPNGLGDRDVVGEEIEGV-FEKRLSELSAAVSGAMCRLEERA 1545
A+FR+A+ RME L+E E KD AAAIK LRDKA+LAK RLSTEVE L+ N L + +A A+A SE + + ALK K+ DA+ AAAREE LRA EQAR RADTMSQSLAEAIREQSGL+ ETANAK AEVLEAK RAAE+ E +LA+KL++AS HIS+LR +LRQEV RRE AEAEVSEAQGYL SSRQELGELRHLAWKLEQMGRNS H+D +QA+ LE +L RGV VG E G + R+ GR + + G G E G E+G A RR + S + K + L AL+GLR++L+ VN QL +AKAENE R E VA+R ERL A +A A DR+SA L RVV+GIS ILLD LGVA+P L + VGE EG RL ++ + C + RA
Sbjct: 251 ARFREAVTRMESLMEGEAKDCAAAIKNLRDKALLAKERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEV------------------------------------------ENMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGVAGTVGGEEARRGANREEERKHGRSLPSGGWARGRSE---------------------------GGGKEEAGLLCARRRSVPQALS----------SWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDGGEDVGERGEGKGVALRLYDIRLFIMYPSCLMLRRA 688 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8157.16355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8157.16355.1 >prot_S-dermatodea_contig8157.16355.1 ID=prot_S-dermatodea_contig8157.16355.1|Name=mRNA_S-dermatodea_contig8157.16355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=785bp MELLLEEEGKDSAAAIKELRDKAVLAKGRLSTEVEGLKSANVQLTQAVAAback to top mRNA from alignment at S-dermatodea_contig8157:1552..9143- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8157.16355.1 ID=mRNA_S-dermatodea_contig8157.16355.1|Name=mRNA_S-dermatodea_contig8157.16355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7592bp|location=Sequence derived from alignment at S-dermatodea_contig8157:1552..9143- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8157:1552..9143- >mRNA_S-dermatodea_contig8157.16355.1 ID=mRNA_S-dermatodea_contig8157.16355.1|Name=mRNA_S-dermatodea_contig8157.16355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4710bp|location=Sequence derived from alignment at S-dermatodea_contig8157:1552..9143- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |