prot_S-dermatodea_contig8151.16351.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig8151.16351.1
Unique Name	prot_S-dermatodea_contig8151.16351.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	119

Homology

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: D8LBS0_ECTSI (eIF-5a domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS0_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.390e-73
Identity = 110/118 (93.22%), Postives = 114/118 (96.61%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEESG 118
            VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVV RNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYP+GFG EIK +F++G TLCVTVMAAMGHEQIVTYKEESG
Sbjct:   83 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEESG 200

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 9.600e-73
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEESG 118
            VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVV RNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYP+GFG EIK +FE+G TLCVTVMAAMGHEQIVTYKEESG
Sbjct:  137 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFEEGLTLCVTVMAAMGHEQIVTYKEESG 254

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: A0A835Z7R2_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.440e-55
Identity = 82/117 (70.09%), Postives = 103/117 (88.03%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEES 117
            V NVSTSKTGKHGHAKANFTA DIFTGKKLED++P++H TSVP V R +YQLLDISDDGF SLLTE GDTKDDL+LP +P+GF ++++ +F+ GKTL VTV++AMGH+Q++ YKE++
Sbjct:   49 VANVSTSKTGKHGHAKANFTAIDIFTGKKLEDIVPTSHATSVPNVARVDYQLLDISDDGFLSLLTESGDTKDDLKLPGFPEGFDEQLRTEFDAGKTLIVTVVSAMGHDQVMAYKEDT 165

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: A0A7S2UU65_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU65_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.530e-53
Identity = 81/117 (69.23%), Postives = 102/117 (87.18%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEES 117
            VVNVSTSKTGKHGHAKANFTA DIFTGKK ED++P+THTTSVP V R EYQL+DISDDG+ SLLT+ GDTKDDL LPT+P+GF  EI+  F++GK++ +TV++AMG +Q+V+ KE++
Sbjct:   46 VVNVSTSKTGKHGHAKANFTAIDIFTGKKYEDIVPTTHTTSVPNVSRAEYQLIDISDDGYLSLLTDSGDTKDDLVLPTHPEGFADEIRAAFDEGKSMVLTVLSAMGTDQVVSMKEDT 162

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: A0A8K1CGM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGM3_PYTOL)

HSP 1 Score: 170 bits (430), Expect = 5.230e-52
Identity = 81/117 (69.23%), Postives = 97/117 (82.91%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEES 117
            VVNVSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R EY LLDIS+D F SL+ E GDT++D++LP+YPDGF  EI++ FEDGK L VTV+ A G EQI++ KE++
Sbjct:   40 VVNVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRKEYTLLDISEDDFVSLMDESGDTREDVKLPSYPDGFANEIRSDFEDGKQLVVTVLKACGTEQIISKKEDT 156

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: W7U6Y6_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Y6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.840e-50
Identity = 81/117 (69.23%), Postives = 99/117 (84.62%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEES 117
            VVNVSTSKTGKHGHAKANFTA DIF GKK+EDV+P+THTT VP V R+EYQLLDI +DGF SLL E+G T+DDL+LP YP+GF QEI   ++DGK+L V+V++A G +QI+ YKEE+
Sbjct:   47 VVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: A0A662XWR0_9STRA (Eukaryotic translation initiation factor 5A (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWR0_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.900e-49
Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEESG 118
            VVNVSTSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP V R E+ LLDI+DD FCSL+ E G+T++D++LPT+PD F  EI+  F+DGK L +TV+ A G EQIV  KE+ G
Sbjct:   28 VVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEFTLLDITDDDFCSLMNEGGETREDIKLPTFPDTFADEIRADFDDGKQLVLTVLKACGTEQIVAKKEDLG 145

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: M4B4L4_HYAAE (Eukaryotic translation initiation factor 5A n=18 Tax=Peronosporaceae TaxID=4777 RepID=M4B4L4_HYAAE)

HSP 1 Score: 163 bits (412), Expect = 2.950e-49
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEE 116
            VVN+STSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP V R EY LLDI+DD FCSL+ + GDT++D++LPT+P+ FG+EI+  F DGK L +TV+ A G EQI+  KE+
Sbjct:   43 VVNMSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGDTREDIKLPTFPETFGEEIRADFNDGKQLVLTVLKACGTEQIIAKKED 158

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: A0A5D6XTX1_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTX1_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.310e-48
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEES 117
            VV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R EY LLDISDD F +L+ + GDT+DD++LPT+PD F  EI+  F+ GK L VTV+ A G EQI++ KE++
Sbjct:   41 VVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVARAEYTLLDISDDDFVTLMDDGGDTRDDIKLPTFPDNFADEIRADFDSGKQLVVTVLKACGIEQIISKKEDT 157

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BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Match: K3WUI8_GLOUD (Eukaryotic translation initiation factor 5A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI8_GLOUD)

HSP 1 Score: 158 bits (399), Expect = 2.710e-47
Identity = 73/117 (62.39%), Postives = 96/117 (82.05%), Query Frame = 0

Query:    1 VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVTVMAAMGHEQIVTYKEES 117
            VV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V R+EY LLDI+DD F SL+ + G+T++D++LPT+PD F +EI+  F+ GK L +TV+ A G EQ+++ KE++
Sbjct:   40 VVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRSEYTLLDITDDDFLSLMDDSGETREDIKLPTFPDNFAEEIRADFDAGKQLVLTVLKACGTEQVISKKEDT 156

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig8151.16351.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBS0_ECTSI	3.390e-73	93.22	eIF-5a domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A6H5KDL5_9PHAE	9.600e-73	94.07	eIF-5a domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A835Z7R2_9STRA	4.440e-55	70.09	Eukaryotic translation initiation factor 5A n=2 Ta...	[more]
A0A7S2UU65_9STRA	2.530e-53	69.23	Eukaryotic translation initiation factor 5A n=1 Ta...	[more]
A0A8K1CGM3_PYTOL	5.230e-52	69.23	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
W7U6Y6_9STRA	3.840e-50	69.23	Eukaryotic translation initiation factor 5A n=2 Ta...	[more]
A0A662XWR0_9STRA	1.900e-49	66.10	Eukaryotic translation initiation factor 5A (Fragm...	[more]
M4B4L4_HYAAE	2.950e-49	65.52	Eukaryotic translation initiation factor 5A n=18 T...	[more]
A0A5D6XTX1_9STRA	3.310e-48	65.81	Eukaryotic translation initiation factor 5A n=1 Ta...	[more]
K3WUI8_GLOUD	2.710e-47	62.39	Eukaryotic translation initiation factor 5A n=1 Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 44..114 e-value: 4.4E-32 score: 122.6
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 44..114 e-value: 2.0E-27 score: 95.1
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..44 e-value: 1.6E-19 score: 71.4
None	No IPR available	GENE3D	2.40.50.140		coord: 45..118 e-value: 7.5E-29 score: 101.6
None	No IPR available	PANTHER	PTHR11673:SF32	EUKARYOTIC TRANSLATION INITIATION FACTOR 5A-2	coord: 1..118
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 1..112 e-value: 5.7E-30 score: 101.8
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..118 e-value: 1.0E-44 score: 149.8
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A-RELATED	coord: 1..118
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 9..16
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..52
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 45..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig8151	contig	S-dermatodea_contig8151:2504..8254 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig8151.16351.1	mRNA_S-dermatodea_contig8151.16351.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig8151 2504..8254 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig8151.16351.1 ID=prot_S-dermatodea_contig8151.16351.1|Name=mRNA_S-dermatodea_contig8151.16351.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
VVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVRRNEY
QLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGQEIKNQFEDGKTLCVT
VMAAMGHEQIVTYKEESG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR020189	Transl_elong_IF5A_C
IPR014722	Rib_L2_dom2
IPR001884	IF5A-like
IPR019769	Trans_elong_IF5A_hypusine_site
IPR008991	Translation_prot_SH3-like_sf
IPR012340	NA-bd_OB-fold