mRNA_S-dermatodea_contig8145.16341.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8145.16341.1
Unique NamemRNA_S-dermatodea_contig8145.16341.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8145.16341.1 vs. uniprot
Match: D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.680e-16
Identity = 55/86 (63.95%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  232 MASSKTKKGFSMSLGKTKLSSSSKNRPEGGDRTTT--SKSSAIRPGRHEEDEEGGRASAKRDYVTGIGGGKVDTKEKIVERGPRVI 483
            MASSK KKGFSMSLGK K SSSS    +G DR T+  SKSS    G   +DE+ G    KRDYVTGIGGGKV TKE +V+RGPRVI
Sbjct:    1 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVI 86
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8145.16341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L2_ECTSI1.680e-1663.95G-patch_2 domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8145contigS-dermatodea_contig8145:1786..2271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog2880.D7G7L2
Preferred nameGPKOW
KEGG rclassRC00010
KEGG koko:K10798,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.defense response signaling pathway, resistance gene-dependent
EggNOG OGsKOG4315@1,KOG4315@2759
EC2.4.2.30,3.5.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size487
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.109247-UTR-S-dermatodea_contig8145:1785..20161622925324.109247-UTR-S-dermatodea_contig8145:1785..2016Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8145 1786..2016 +
1694079855.6830752-UTR-S-dermatodea_contig8145:1785..20161694079855.6830752-UTR-S-dermatodea_contig8145:1785..2016Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8145 1786..2016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925324.1194587-CDS-S-dermatodea_contig8145:2016..22711622925324.1194587-CDS-S-dermatodea_contig8145:2016..2271Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8145 2017..2271 +
1694079855.6965156-CDS-S-dermatodea_contig8145:2016..22711694079855.6965156-CDS-S-dermatodea_contig8145:2016..2271Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8145 2017..2271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8145.16341.1prot_S-dermatodea_contig8145.16341.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8145 2017..2271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8145.16341.1

>prot_S-dermatodea_contig8145.16341.1 ID=prot_S-dermatodea_contig8145.16341.1|Name=mRNA_S-dermatodea_contig8145.16341.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MASSKTKKGFSMSLGKTKLSSSSKNRPEGGDRTTTSKSSAIRPGRHEEDE
EGGRASAKRDYVTGIGGGKVDTKEKIVERGPRVIP
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mRNA from alignment at S-dermatodea_contig8145:1786..2271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8145.16341.1 ID=mRNA_S-dermatodea_contig8145.16341.1|Name=mRNA_S-dermatodea_contig8145.16341.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig8145:1786..2271+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGAGGCTGCCAAACAGGAAGCACTACTTTAGTTGGATATCTAGATTGG
CACCCGCCGGCGTTGCTTAGTTTCCCCTGGTGGCGATCAAACAAGCCTTG
CGTTTGATTTTGTTTTTTGTAAACAGGCAGGCGGCTCAATAAGCGCGGAG
AGCCAACACTTCGTCTCGTAGGGTTTAGCACAGGACAATACCTGCTAATT
AGCTCCAGGGCAGCGCGCCCAGGAGGAAACCATGGCCAGCTCGAAGACCA
AGAAGGGCTTCTCCATGTCTCTCGGGAAGACCAAGCTGTCATCCTCGTCG
AAGAACAGGCCAGAAGGTGGCGACCGCACTACCACATCCAAGTCTTCGGC
CATACGGCCCGGTAGACACGAGGAGGACGAGGAGGGGGGTAGGGCATCCG
CCAAGCGGGACTATGTGACAGGCATCGGGGGGGGCAAGGTCGATACCAAG
GAGAAAATCGTCGAGCGAGGGCCCCGCGTCATCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8145:1786..2271+

>mRNA_S-dermatodea_contig8145.16341.1 ID=mRNA_S-dermatodea_contig8145.16341.1|Name=mRNA_S-dermatodea_contig8145.16341.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig8145:1786..2271+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAGCTCGAAGACCAAGAAGGGCTTCTCCATGTCTCTCGGGAAGAC
CAAGCTGTCATCCTCGTCGAAGAACAGGCCAGAAGGTGGCGACCGCACTA
CCACATCCAAGTCTTCGGCCATACGGCCCGGTAGACACGAGGAGGACGAG
GAGGGGGGTAGGGCATCCGCCAAGCGGGACTATGTGACAGGCATCGGGGG
GGGCAAGGTCGATACCAAGGAGAAAATCGTCGAGCGAGGGCCCCGCGTCA
TCCCGATGGCCAGCTCGAAGACCAAGAAGGGCTTCTCCATGTCTCTCGGG
AAGACCAAGCTGTCATCCTCGTCGAAGAACAGGCCAGAAGGTGGCGACCG
CACTACCACATCCAAGTCTTCGGCCATACGGCCCGGTAGACACGAGGAGG
ACGAGGAGGGGGGTAGGGCATCCGCCAAGCGGGACTATGTGACAGGCATC
GGGGGGGGCAAGGTCGATACCAAGGAGAAAATCGTCGAGCGAGGGCCCCG
CGTCATCCCG
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