mRNA_S-dermatodea_contig8136.16334.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8136.16334.1
Unique NamemRNA_S-dermatodea_contig8136.16334.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 6.650e-62
Identity = 93/143 (65.03%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    1 DGLAPWQDERADMAQDMGEIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVALGPRHRMLLRRAVIGINEKIQNWANWGCG-ERMVTVPY 426
            DG++PWQDERADMAQDMGEIWLHRAML HPWRV +PE+ADLF+VP+YPVLS KL   +   C G +H + +  +V++L   S YF+RFGGADH +VCAWWNC+ ALGP+ RMLLRR V+GINEK+  W  WGCG ++MVT+PY
Sbjct:  182 DGVSPWQDERADMAQDMGEIWLHRAMLAHPWRVANPEEADLFYVPMYPVLSTKLGNNR---CGGKTHDELINTSVEYLALSSVYFRRFGGADHTLVCAWWNCKSALGPKPRMLLRRTVVGINEKMLEWTRWGCGLDKMVTIPY 321          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A6H5KWD0_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD0_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.640e-50
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   76 MLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVALGPRHRMLLRRAVIGINEKIQNWANWGCGE-RMVTVPY 426
            ML HPWRVLDPE+ADLF+VP+YPVLS+KL   +   C GL+H + M  +V++L   S +F RFGGADH+++CAWW C  ALGP+HRMLLRRAV+GINE++  W  WGCG  +MVTVPY
Sbjct:    1 MLSHPWRVLDPEEADLFYVPIYPVLSFKLATSR---CGGLTHNELMDASVEYLSSSSPFFNRFGGADHILMCAWWKCGEALGPKHRMLLRRAVVGINERLLRWTRWGCGRSKMVTVPY 115          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A6H5LR87_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR87_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.040e-47
Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 1
Query:   76 MLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKD------KGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVALGPRHRMLLRRAVIGINEKIQNWANWGCGER-MVTVPY 426
            ML HPWRVLDPE+ADLF+VP+Y  LS KL           + C GL+H + M  +V++L   S +F RFGGADH+++CAWW CR  LGP+HRMLLRR V+GINE++  W  WGCG R MVTVPY
Sbjct:    1 MLFHPWRVLDPEEADLFYVPIYSALSSKLTEHSTIHLELRRRCGGLTHDELMDASVEYLSSSSLFFNRFGGADHILMCAWWGCRNGLGPKHRMLLRRTVVGINERVFKWTRWGCGPRKMVTVPY 124          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.050e-29
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  184 CRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVALGPRHRMLLRRAVIGINEKIQNWANWGCGER-MVTVPY 426
            C GL+H + M  +V +L   S +F RFGGADHV++CAWW CR  LGP+HRMLLRR V+GINE++  W  WGCG R MVTVPY
Sbjct:    6 CGGLTHDELMDASVDYLSSSSLFFNRFGGADHVLMCAWWGCRNGLGPKHRMLLRRTVVGINERVFLWTRWGCGPRKMVTVPY 87          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A7S2SDK7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDK7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.620e-17
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    7 LAPWQD-ERADMAQDMGEIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVAL-GP 324
            L PW++  RA+M Q+ G +WLH  +  HP R LDPE+A LF +P    LS+ L G+    C   SH +R    VK   + S YF+R GG DH+++  WW    AL GP
Sbjct:  660 LYPWEELSRAEMTQNTGALWLHETLKTHPLRTLDPEEAQLFIIPFDTFLSWTLDGE----CH--SHTRRA-EQVKRFLENSEYFQRHGGHDHLLISPWWGTARALQGP 760          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A7S3ZW87_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW87_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.170e-12
Identity = 50/145 (34.48%), Postives = 70/145 (48.28%), Query Frame = 1
Query:   13 PWQDERADMAQDMGEIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVA---LGPRHRMLLRRAVIGINEKIQNWANWGCGE----RMVTVPY 426
            P Q     +A+++ E+W+HRA+L+   R  DPE A LFFVP Y  LS        K   G  H +R+   ++ L + S +F+R  GADHV   +  N  VA   L P+    L ++  G+ E    W      E    RMV  PY
Sbjct:   71 PQQRRHYKIAEELVEVWVHRALLNDKRRTTDPEAASLFFVPAYLSLS--------KNSDGQGHDERLSALIEEL-RSSKWFQRHRGADHVFGYSSINPGVARQLLFPKLHAGLEQSYFGVFEMNPAWVGGDRKEETLRRMVPAPY 206          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A7S0S6F0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S6F0_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 4.140e-12
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   40 AQDMGEIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKG--C-RGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWN-CRVALGPRHRMLLRRAVIGINE 369
            AQ + ++ ++  ML HP RVLDP  A++F++P+    S   +G    G  C   LSH QR+   V H+ + S +++R  GADH +V AWWN   V LG   + + R  V G  E
Sbjct:  180 AQSLADVEMNIRMLQHPARVLDPTQANMFYIPIVMAPSV-FLGHTGGGGLCPEFLSHAQRIRQVV-HVLEASPWYRRNQGADHFIVTAWWNGTDVYLGELFKHVFRNVVAGFFE 291          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A7S2LEY5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LEY5_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 1.070e-10
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   55 EIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIG-KKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNC 306
            + W  +A L HPWRV DPE+ADLF VP       + I   + + C G      ++     +  +S +FKR+GG DHV VC+ + C
Sbjct:  107 DYWFLKAALHHPWRVSDPEEADLFVVPALLNFPMEQISFSRRQCCVGDLCNAELFRYTDTMLAQSPWFKRYGGKDHVAVCSHYGC 191          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A8J6CHB5_DIALT (Exostosin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHB5_DIALT)

HSP 1 Score: 60.5 bits (145), Expect = 6.150e-8
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   13 PWQ-DERADMAQDMGEIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWWNCRVALGPRHRMLLRRAVIGINEKIQNWANW 393
            PW  DE   M     EIW  + ++ HP RV    DA++F VP++P+LS KL+G     C   +H +RM  A   L + S +++R  G  H +V A    + ALG   R  LR ++I  NE+     +W
Sbjct:   83 PWACDEHPGMDHVAPEIWATQFLMHHPARVSQAMDAEIFLVPVWPLLS-KLVGN---ACGQGTHDERMRKANAAL-RGSAHWQRVPGR-HFVVAAGPRAQSALGDELRRSLRGSMIA-NEESWGGLDW 203          
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Match: A0A2R6WXX9_MARPO (Exostosin domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WXX9_MARPO)

HSP 1 Score: 60.1 bits (144), Expect = 8.530e-8
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   55 EIWLHRAMLDHPWRVLDPEDADLFFVPLYPVLSYKLIGKKDKGCRGLSHGQRMYV-AVKHLEQESTYFKRFGGADHVMVCA 294
            E+ +H+ +L  P R L+PE ADLFFVP+Y   ++        G   LSH   M   AV  +     Y+ R GG+DH+ V A
Sbjct:  228 EVAIHQVLLKSPLRTLNPEKADLFFVPVYVSCNFN----PKNGFPSLSHAPAMMKEAVNLISSAEVYWNRSGGSDHIFVAA 304          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8136.16334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ23_ECTSI6.650e-6265.03Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KWD0_9PHAE2.640e-5061.86Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LR87_9PHAE3.040e-4757.26Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE8.050e-2960.98Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2SDK7_9STRA2.620e-1742.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZW87_9STRA2.170e-1234.48Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S0S6F0_9CHLO4.140e-1237.72Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2LEY5_9DINO1.070e-1037.65Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A8J6CHB5_DIALT6.150e-835.16Exostosin domain-containing protein n=1 Tax=Diacro... [more]
A0A2R6WXX9_MARPO8.530e-838.27Exostosin domain-containing protein n=2 Tax=Marcha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8136contigS-dermatodea_contig8136:2765..3190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog2880.D8LQ23
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size428
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.6884048-CDS-S-dermatodea_contig8136:2764..31901622925323.6884048-CDS-S-dermatodea_contig8136:2764..3190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8136 2765..3190 +
1694079855.3489933-CDS-S-dermatodea_contig8136:2764..31901694079855.3489933-CDS-S-dermatodea_contig8136:2764..3190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8136 2765..3190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8136.16334.1prot_S-dermatodea_contig8136.16334.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8136 2765..3190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8136.16334.1

>prot_S-dermatodea_contig8136.16334.1 ID=prot_S-dermatodea_contig8136.16334.1|Name=mRNA_S-dermatodea_contig8136.16334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
DGLAPWQDERADMAQDMGEIWLHRAMLDHPWRVLDPEDADLFFVPLYPVL
SYKLIGKKDKGCRGLSHGQRMYVAVKHLEQESTYFKRFGGADHVMVCAWW
NCRVALGPRHRMLLRRAVIGINEKIQNWANWGCGERMVTVPY
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mRNA from alignment at S-dermatodea_contig8136:2765..3190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8136.16334.1 ID=mRNA_S-dermatodea_contig8136.16334.1|Name=mRNA_S-dermatodea_contig8136.16334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig8136:2765..3190+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGCCTTGCTCCCTGGCAGGACGAGCGCGCCGACATGGCGCAGGACAT GGGCGAGATCTGGCTGCATCGCGCGATGCTGGATCACCCCTGGCGTGTGC TCGACCCCGAGGACGCGGATTTGTTTTTTGTTCCCCTCTACCCTGTCCTG AGCTACAAGCTGATCGGCAAGAAAGACAAGGGATGCAGGGGGCTATCGCA TGGACAGAGGATGTACGTCGCCGTCAAACACTTGGAGCAGGAGAGCACCT ATTTCAAGCGGTTCGGTGGTGCTGACCATGTGATGGTGTGCGCGTGGTGG AACTGTCGTGTGGCGTTAGGTCCCCGGCACAGGATGCTGTTGAGGCGTGC CGTGATAGGAATCAACGAGAAAATACAAAACTGGGCAAATTGGGGGTGTG GCGAGCGGATGGTCACAGTACCTTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8136:2765..3190+

>mRNA_S-dermatodea_contig8136.16334.1 ID=mRNA_S-dermatodea_contig8136.16334.1|Name=mRNA_S-dermatodea_contig8136.16334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig8136:2765..3190+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGCCTTGCTCCCTGGCAGGACGAGCGCGCCGACATGGCGCAGGACAT
GGGCGAGATCTGGCTGCATCGCGCGATGCTGGATCACCCCTGGCGTGTGC
TCGACCCCGAGGACGCGGATTTGTTTTTTGTTCCCCTCTACCCTGTCCTG
AGCTACAAGCTGATCGGCAAGAAAGACAAGGGATGCAGGGGGCTATCGCA
TGGACAGAGGATGTACGTCGCCGTCAAACACTTGGAGCAGGAGAGCACCT
ATTTCAAGCGGTTCGGTGGTGCTGACCATGTGATGGTGTGCGCGTGGTGG
AACTGTCGTGTGGCGTTAGGTCCCCGGCACAGGATGCTGTTGAGGCGTGC
CGTGATAGGAATCAACGAGAAAATACAAAACTGGGCAAATTGGGGGTGTG
GCGAGCGGATGGTCACAGTACCTTACGACGGCCTTGCTCCCTGGCAGGAC
GAGCGCGCCGACATGGCGCAGGACATGGGCGAGATCTGGCTGCATCGCGC
GATGCTGGATCACCCCTGGCGTGTGCTCGACCCCGAGGACGCGGATTTGT
TTTTTGTTCCCCTCTACCCTGTCCTGAGCTACAAGCTGATCGGCAAGAAA
GACAAGGGATGCAGGGGGCTATCGCATGGACAGAGGATGTACGTCGCCGT
CAAACACTTGGAGCAGGAGAGCACCTATTTCAAGCGGTTCGGTGGTGCTG
ACCATGTGATGGTGTGCGCGTGGTGGAACTGTCGTGTGGCGTTAGGTCCC
CGGCACAGGATGCTGTTGAGGCGTGCCGTGATAGGAATCAACGAGAAAAT
ACAAAACTGGGCAAATTGGGGGTGTGGCGAGCGGATGGTCACAGTACCTT
AC
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