mRNA_S-dermatodea_contig81355.16332.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81355.16332.1
Unique NamemRNA_S-dermatodea_contig81355.16332.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig81355.16332.1 vs. uniprot
Match: D7G2W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W5_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 7.930e-26
Identity = 63/90 (70.00%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:   28 SSRRPAGNKALDKKPFDLAAVQSL---AGGNKTGAGTTDTVPGRKRLLGGVGFWARFESATKASLLLLVGAGVGGLLLPEGRAAVAQAKF 288
            SSRRP GNKAL+K+ FDLAA+QSL   AG + +G G   T PGRKRLLGGV FW   E  TK +LLLL+GAGVGGLLLPE RAAVAQAKF
Sbjct:  214 SSRRPTGNKALEKQGFDLAAIQSLSRAAGTDNSGVGGAAT-PGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKF 302
[Close]
BLAST of mRNA_S-dermatodea_contig81355.16332.1 vs. uniprot
Match: A0A6H5JKL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.860e-15
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   88 VQSLAGGNKTGAGTTDTVPGRKRLLGGVGFWARFESATKASLLLLVGAGVGGLLLPEGRAAVAQAKF 288
            +   AG   +G G   T PGRKRLLGGV FW   E  TK +LLLL+GAGVGGLLLPE RAAVAQAKF
Sbjct:    1 MSRAAGTGNSGVGGAAT-PGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKF 66
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81355.16332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2W5_ECTSI7.930e-2670.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL1_9PHAE1.860e-1565.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81355contigS-dermatodea_contig81355:102..389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004660.1
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.6080298-CDS-S-dermatodea_contig81355:101..3891622925323.6080298-CDS-S-dermatodea_contig81355:101..389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81355 102..389 +
1694079855.3019981-CDS-S-dermatodea_contig81355:101..3891694079855.3019981-CDS-S-dermatodea_contig81355:101..389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81355 102..389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81355.16332.1prot_S-dermatodea_contig81355.16332.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81355 102..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81355.16332.1

>prot_S-dermatodea_contig81355.16332.1 ID=prot_S-dermatodea_contig81355.16332.1|Name=mRNA_S-dermatodea_contig81355.16332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
PSAGAASRASSRRPAGNKALDKKPFDLAAVQSLAGGNKTGAGTTDTVPGR
KRLLGGVGFWARFESATKASLLLLVGAGVGGLLLPEGRAAVAQAKF
back to top

mRNA from alignment at S-dermatodea_contig81355:102..389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81355.16332.1 ID=mRNA_S-dermatodea_contig81355.16332.1|Name=mRNA_S-dermatodea_contig81355.16332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig81355:102..389+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTCCGCCGGTGCCGCTAGTAGAGCTTCGAGCAGACGCCCAGCGGGTAA
CAAAGCTCTGGACAAGAAGCCCTTCGACCTCGCCGCGGTACAGTCCCTCG
CCGGGGGGAACAAGACGGGCGCGGGGACGACAGATACCGTTCCCGGGCGG
AAACGCCTCCTTGGCGGAGTGGGGTTCTGGGCGCGCTTCGAGAGCGCGAC
AAAGGCGTCGCTGCTGCTGCTGGTTGGGGCCGGGGTGGGGGGGTTGCTGC
TACCGGAGGGGCGCGCGGCGGTGGCGCAGGCCAAATTT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig81355:102..389+

>mRNA_S-dermatodea_contig81355.16332.1 ID=mRNA_S-dermatodea_contig81355.16332.1|Name=mRNA_S-dermatodea_contig81355.16332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig81355:102..389+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTCCGCCGGTGCCGCTAGTAGAGCTTCGAGCAGACGCCCAGCGGGTAA
CAAAGCTCTGGACAAGAAGCCCTTCGACCTCGCCGCGGTACAGTCCCTCG
CCGGGGGGAACAAGACGGGCGCGGGGACGACAGATACCGTTCCCGGGCGG
AAACGCCTCCTTGGCGGAGTGGGGTTCTGGGCGCGCTTCGAGAGCGCGAC
AAAGGCGTCGCTGCTGCTGCTGGTTGGGGCCGGGGTGGGGGGGTTGCTGC
TACCGGAGGGGCGCGCGGCGGTGGCGCAGGCCAAATTTCCTTCCGCCGGT
GCCGCTAGTAGAGCTTCGAGCAGACGCCCAGCGGGTAACAAAGCTCTGGA
CAAGAAGCCCTTCGACCTCGCCGCGGTACAGTCCCTCGCCGGGGGGAACA
AGACGGGCGCGGGGACGACAGATACCGTTCCCGGGCGGAAACGCCTCCTT
GGCGGAGTGGGGTTCTGGGCGCGCTTCGAGAGCGCGACAAAGGCGTCGCT
GCTGCTGCTGGTTGGGGCCGGGGTGGGGGGGTTGCTGCTACCGGAGGGGC
GCGCGGCGGTGGCGCAGGCCAAATTT
back to top