mRNA_S-dermatodea_contig81260.16325.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81260.16325.1
Unique NamemRNA_S-dermatodea_contig81260.16325.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81260.16325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81260contigS-dermatodea_contig81260:2..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81260.16325.1prot_S-dermatodea_contig81260.16325.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81260 164..484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.9786465-UTR-S-dermatodea_contig81260:1..1631622925322.9786465-UTR-S-dermatodea_contig81260:1..163Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81260 2..163 +
1694079854.8338163-UTR-S-dermatodea_contig81260:1..1631694079854.8338163-UTR-S-dermatodea_contig81260:1..163Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81260 2..163 +
1622925323.0031064-UTR-S-dermatodea_contig81260:484..5921622925323.0031064-UTR-S-dermatodea_contig81260:484..592Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81260 485..592 +
1694079854.8526902-UTR-S-dermatodea_contig81260:484..5921694079854.8526902-UTR-S-dermatodea_contig81260:484..592Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81260 485..592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.991327-CDS-S-dermatodea_contig81260:163..4841622925322.991327-CDS-S-dermatodea_contig81260:163..484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81260 164..484 +
1694079854.843349-CDS-S-dermatodea_contig81260:163..4841694079854.843349-CDS-S-dermatodea_contig81260:163..484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81260 164..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81260.16325.1

>prot_S-dermatodea_contig81260.16325.1 ID=prot_S-dermatodea_contig81260.16325.1|Name=mRNA_S-dermatodea_contig81260.16325.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
MEGRSVVSVKIKSSKIKCVNECFMYWTSVCIYVACLYVCSFRETYSRYCF
NLVLGRETVEIGEKAHYGSLISYQVFVRKKRSIVKRPQRRVDLGDGDRCR
YSNRLM*
back to top

mRNA from alignment at S-dermatodea_contig81260:2..592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81260.16325.1 ID=mRNA_S-dermatodea_contig81260.16325.1|Name=mRNA_S-dermatodea_contig81260.16325.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at S-dermatodea_contig81260:2..592+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCAAGGGGTCAGGCGCTCCGGGCGGCGTGCGGGTTATACCTCTGTCATG
TCTGGCCATCAGTTTTTTGTTCGGTGTAGGGGTGCTGGATTTCAATTGCT
CTTGTGCCTTCGTGTGACTACGAGCGGGATCTGATTCAGCATCCACTTTT
GCAATTGCAAAAATGGAGGGCCGGTCGGTTGTAAGTGTGAAAATAAAATC
AAGTAAAATCAAATGTGTGAATGAATGTTTTATGTACTGGACAAGTGTAT
GTATTTATGTAGCGTGTTTGTATGTGTGTTCGTTTCGCGAAACGTACTCG
AGGTATTGTTTTAATTTGGTTTTGGGTCGCGAAACGGTGGAGATCGGGGA
AAAGGCGCACTATGGCTCTCTTATCTCTTATCAGGTTTTCGTGAGGAAAA
AACGATCGATCGTGAAACGACCCCAAAGACGTGTAGATTTAGGTGATGGA
GATAGATGTAGATACAGTAATAGATTGATGTAGATGTGCCGGGGAGAGAC
GGGTTGGTCAATCCCTCGCGACCACAGATAAATGGAATTCGACATTAAGA
AAGGGTCAATCCGTCTTAGGATATACCACGTTTTTAAGGGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig81260:2..592+

>mRNA_S-dermatodea_contig81260.16325.1 ID=mRNA_S-dermatodea_contig81260.16325.1|Name=mRNA_S-dermatodea_contig81260.16325.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig81260:2..592+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGGCCGGTCGGTTGTAAGTGTGAAAATAAAATCAAGTAAAATCAA
ATGTGTGAATGAATGTTTTATGTACTGGACAAGTGTATGTATTTATGTAG
CGTGTTTGTATGTGTGTTCGTTTCGCGAAACGTACTCGAGGTATTGTTTT
AATTTGGTTTTGGGTCGCGAAACGGTGGAGATCGGGGAAAAGGCGCACTA
TGGCTCTCTTATCTCTTATCAGGTTTTCGTGAGGAAAAAACGATCGATCG
TGAAACGACCCCAAAGACGTGTAGATTTAGGTGATGGAGATAGATGTAGA
TACAGTAATAGATTGATGTAGATGGAGGGCCGGTCGGTTGTAAGTGTGAA
AATAAAATCAAGTAAAATCAAATGTGTGAATGAATGTTTTATGTACTGGA
CAAGTGTATGTATTTATGTAGCGTGTTTGTATGTGTGTTCGTTTCGCGAA
ACGTACTCGAGGTATTGTTTTAATTTGGTTTTGGGTCGCGAAACGGTGGA
GATCGGGGAAAAGGCGCACTATGGCTCTCTTATCTCTTATCAGGTTTTCG
TGAGGAAAAAACGATCGATCGTGAAACGACCCCAAAGACGTGTAGATTTA
GGTGATGGAGATAGATGTAGATACAGTAATAGATTGATGTAG
back to top