mRNA_S-dermatodea_contig8119.16319.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8119.16319.1
Unique NamemRNA_S-dermatodea_contig8119.16319.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8119.16319.1 vs. uniprot
Match: D7FN35_ECTSI (Chorein N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN35_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.200e-34
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:  339 MFDDVISTGLQAVLTEIFEAVDKKQLNVSLVGDIFQESHLELTDLRLKKTLLKDLNLPVEIKEGLVGKLVIQGLSG 566
            MFDDVISTGLQAVL EIFE+VDK QLNVSLVGDIF+ESHLELTDLR+KKTLLKD+NLPVE+KEGLVGKLVIQGLSG
Sbjct:    1 MFDDVISTGLQAVLAEIFESVDKNQLNVSLVGDIFKESHLELTDLRIKKTLLKDMNLPVEVKEGLVGKLVIQGLSG 76
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BLAST of mRNA_S-dermatodea_contig8119.16319.1 vs. uniprot
Match: A0A7S3YME8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YME8_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-12
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  339 MFDDVISTGLQAVLTEIFEAVDKKQLNVSLVGDIFQESHLELTDLRLKKTLLKDLNLPVEIKEGLVGKLVIQGLS 563
            MF  +    L+ +L EIFE VD+  L +S++GD+F ESH+EL+DL LK+ ++ DL  P  I    +GKL ++G+S
Sbjct:    1 MFSKLAFNQLKGILGEIFEDVDENTLEISMLGDLFSESHVELSDLYLKQDIINDLLPPFNITRAFIGKLSVRGIS 75
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BLAST of mRNA_S-dermatodea_contig8119.16319.1 vs. uniprot
Match: A0A1V9YW84_9STRA (USP domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YW84_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.390e-7
Identity = 29/80 (36.25%), Postives = 53/80 (66.25%), Query Frame = 3 
Query:  327 AQRVMFDDVISTGLQAVLTEIFEAVDKKQLNVSLVGDIFQESHLELTDLRLKKTLLKDLNLPVEIKEGLVGKLVIQGLSG 566
            A++++F+ +     +  L E+FEA+D+  + +S++GD+F ESHL L DL +K ++   L  P+E+  G +G+L ++GL G
Sbjct: 1477 AKKLLFEKI-----KHFLHEVFEALDEDAVEISVLGDLFDESHLRLEDLFVKPSVFNMLPYPIELVTGYLGQLNVEGLLG 1551
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BLAST of mRNA_S-dermatodea_contig8119.16319.1 vs. uniprot
Match: A0A1V9ZSH0_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSH0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-6
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:  327 AQRVMFDDVISTGLQAVLTEIFEAVDKKQLNVSLVGDIFQESHLELTDLRLKKTLLKDLNLPVEIKEGLVGKLVIQGLSG 566
            A+R+  D V       +L E+FE VD+  ++VS++GD+F +SHL L  L LK+ +   L +P  +  G +G+L +QG+ G
Sbjct: 1212 AKRLFLDKVTH-----LLQEVFEPVDEAGVDVSVLGDLFDDSHLRLEHLFLKRDVFNALPVPFALLTGYIGQLHVQGMLG 1286
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8119.16319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FN35_ECTSI6.200e-3490.79Chorein N-terminal domain-containing protein n=1 T... [more]
A0A7S3YME8_HETAK1.940e-1244.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9YW84_9STRA3.390e-736.25USP domain-containing protein n=1 Tax=Thraustothec... [more]
A0A1V9ZSH0_9STRA5.150e-637.50Helicase ATP-binding domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8119contigS-dermatodea_contig8119:8775..9340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13A N-terminal domain
Ec32 orthologEc-25_001400.1
Hectar predicted targeting categoryother localisation
Exons1
Model size566
Cds size228
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.396364-UTR-S-dermatodea_contig8119:8774..91121622925322.396364-UTR-S-dermatodea_contig8119:8774..9112Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8119 8775..9112 +
1694079854.4015017-UTR-S-dermatodea_contig8119:8774..91121694079854.4015017-UTR-S-dermatodea_contig8119:8774..9112Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8119 8775..9112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.4090946-CDS-S-dermatodea_contig8119:9112..93401622925322.4090946-CDS-S-dermatodea_contig8119:9112..9340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8119 9113..9340 +
1694079854.4169462-CDS-S-dermatodea_contig8119:9112..93401694079854.4169462-CDS-S-dermatodea_contig8119:9112..9340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8119 9113..9340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8119.16319.1prot_S-dermatodea_contig8119.16319.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8119 9113..9340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8119.16319.1

>prot_S-dermatodea_contig8119.16319.1 ID=prot_S-dermatodea_contig8119.16319.1|Name=mRNA_S-dermatodea_contig8119.16319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=76bp
MFDDVISTGLQAVLTEIFEAVDKKQLNVSLVGDIFQESHLELTDLRLKKT
LLKDLNLPVEIKEGLVGKLVIQGLSG
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mRNA from alignment at S-dermatodea_contig8119:8775..9340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8119.16319.1 ID=mRNA_S-dermatodea_contig8119.16319.1|Name=mRNA_S-dermatodea_contig8119.16319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at S-dermatodea_contig8119:8775..9340+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCAAAGCATTTGGCTCCAGCTACTTTTGCTGACTGCTGTACGCACAGCA
GCGGGCGTCTAACAGCCTGACCAGCAGCAAGCAAAGCAGGTTGCTGCGCT
ACTCCGTGGTTCGCTCATCCTTCTAGGCGGTGATCAACACCACAGCACAC
AGCGCGTGCCCCGCGAGCAAGCGGCTCCCTGTCCTCTGGCCGCGTATACA
AGGGCGGGTGGGGTCTGGCCCCTCTGTAGTGCGCCGCGCTCTCACACAGG
AAAATCAAAATAAACAACAGTCACCGCCCGTACGGTTTTACATCAGCACC
TGCAGCACCGCAGCTTGCACAGCAGAGCACAGCGAGTCATGTTCGACGAT
GTCATCTCGACCGGGCTGCAGGCCGTGCTCACCGAGATCTTCGAGGCGGT
GGACAAGAAGCAACTGAACGTCTCCCTGGTTGGGGACATATTTCAGGAGT
CCCACCTGGAGCTTACCGACCTGCGACTGAAGAAAACACTGCTGAAGGAC
CTGAATCTGCCTGTCGAGATCAAGGAAGGTCTCGTGGGAAAGCTGGTCAT
ACAGGGCCTCAGCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8119:8775..9340+

>mRNA_S-dermatodea_contig8119.16319.1 ID=mRNA_S-dermatodea_contig8119.16319.1|Name=mRNA_S-dermatodea_contig8119.16319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig8119:8775..9340+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGACGATGTCATCTCGACCGGGCTGCAGGCCGTGCTCACCGAGAT
CTTCGAGGCGGTGGACAAGAAGCAACTGAACGTCTCCCTGGTTGGGGACA
TATTTCAGGAGTCCCACCTGGAGCTTACCGACCTGCGACTGAAGAAAACA
CTGCTGAAGGACCTGAATCTGCCTGTCGAGATCAAGGAAGGTCTCGTGGG
AAAGCTGGTCATACAGGGCCTCAGCGGTATGTTCGACGATGTCATCTCGA
CCGGGCTGCAGGCCGTGCTCACCGAGATCTTCGAGGCGGTGGACAAGAAG
CAACTGAACGTCTCCCTGGTTGGGGACATATTTCAGGAGTCCCACCTGGA
GCTTACCGACCTGCGACTGAAGAAAACACTGCTGAAGGACCTGAATCTGC
CTGTCGAGATCAAGGAAGGTCTCGTGGGAAAGCTGGTCATACAGGGCCTC
AGCGGT
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