mRNA_S-dermatodea_contig81188.16318.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81188.16318.1
Unique NamemRNA_S-dermatodea_contig81188.16318.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: D7FPW4_ECTSI (Protein-L-isoaspartate (D-aspartate) O-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.840e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            T DGW+GW E GP+DAIHVGAAAE+IP +LV+QLKVGGRMVVPVGP S +QMLVQV
Sbjct:  243 TADGWRGWPENGPYDAIHVGAAAESIPMDLVAQLKVGGRMVVPVGPPSETQMLVQV 298
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A6H5JZ95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ95_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 7.130e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            T DGW+GW E GP+DAIHVGAAAE+IP +LV+QLKVGGRMVVPVGP S +QMLVQV
Sbjct:  211 TADGWRGWPENGPYDAIHVGAAAESIPMDLVAQLKVGGRMVVPVGPPSETQMLVQV 266
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A7S2XWK2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWK2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.210e-18
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 GDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            GDGWKG  E  P+DAIHVGAAA  IPE LV QLKVGGRMV+PVGPQ   QML QV
Sbjct:  223 GDGWKGMPEHAPYDAIHVGAAAVEIPEALVRQLKVGGRMVIPVGPQDGVQMLYQV 277
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: UPI001D084E9F (protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D084E9F)

HSP 1 Score: 81.6 bits (200), Expect = 2.010e-17
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            TGDG KG+ E  P+DAIHVGAAA T+PE+LVSQLKVGGR+++PVGP    Q L Q+
Sbjct:  158 TGDGRKGYPEMAPYDAIHVGAAAPTLPEDLVSQLKVGGRLIIPVGPSGGDQQLEQI 213
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A836CP96_9STRA (Protein-L-isoaspartate O-methyltransferase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP96_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.070e-17
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            T +GW+GW E  PFDAIHVGAAAETIP  LV QLK+GGRM +PVGP    Q L+QV
Sbjct:  168 TRNGWEGWPEVAPFDAIHVGAAAETIPPKLVHQLKLGGRMFIPVGPYGGPQELMQV 223
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A7S2NC87_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NC87_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.590e-17
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 DGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            DGW G A +GPFDAIHVGAAA T+P  LV  LK GGRM++PVGP    Q LVQV
Sbjct:   24 DGWAGVASRGPFDAIHVGAAAATVPAELVKSLKDGGRMIIPVGPDGGQQELVQV 77
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: UPI001E2780AD (protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2780AD)

HSP 1 Score: 80.5 bits (197), Expect = 5.450e-17
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            TGDG KG++E  P+DAIHVGAAA T+P +LVSQLKVGGR+V+PVGP    Q L Q+
Sbjct:  157 TGDGRKGYSEMAPYDAIHVGAAAPTLPADLVSQLKVGGRLVIPVGPSGGDQQLEQI 212
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A1S3IWE2_LINUN (Protein-L-isoaspartate O-methyltransferase n=3 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IWE2_LINUN)

HSP 1 Score: 80.5 bits (197), Expect = 9.340e-17
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
             GDG KG+AE GP+DAIHVGAAA  +P++LV QLK GGR+++PVGP+  +Q LVQV
Sbjct:  171 VGDGRKGYAEDGPYDAIHVGAAAPNLPQHLVDQLKPGGRLIIPVGPEGHNQQLVQV 226
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A4S2LYE0_OPIFE (Uncharacterized protein n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2LYE0_OPIFE)

HSP 1 Score: 79.0 bits (193), Expect = 1.250e-16
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            TGDG +GW + GP+DAIHVGAAAET+P+ L  QLK GGR++ PVGP    Q+LVQV
Sbjct:  123 TGDGRQGWPQDGPYDAIHVGAAAETLPQALKDQLKPGGRLICPVGPVGRDQVLVQV 178
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BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Match: A0A0G4FTE3_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FTE3_9ALVE)

HSP 1 Score: 79.3 bits (194), Expect = 1.300e-16
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    7 DGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSSQMLVQV 168
            DGWKGWAE GP+DAIHVGAAA+ IP+ LV QL  GG MV+PVGP   SQ +++V
Sbjct:  146 DGWKGWAEAGPYDAIHVGAAAQEIPKALVEQLAPGGLMVLPVGPAGGSQEMMEV 199
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81188.16318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPW4_ECTSI3.840e-2278.57Protein-L-isoaspartate (D-aspartate) O-methyltrans... [more]
A0A6H5JZ95_9PHAE7.130e-2278.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XWK2_9STRA6.210e-1874.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001D084E9F2.010e-1766.07protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
A0A836CP96_9STRA2.070e-1767.86Protein-L-isoaspartate O-methyltransferase-like pr... [more]
A0A7S2NC87_9EUKA3.590e-1766.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
UPI001E2780AD5.450e-1766.07protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
A0A1S3IWE2_LINUN9.340e-1764.29Protein-L-isoaspartate O-methyltransferase n=3 Tax... [more]
A0A4S2LYE0_OPIFE1.250e-1664.29Uncharacterized protein n=1 Tax=Opisthorchis felin... [more]
A0A0G4FTE3_9ALVE1.300e-1666.67Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81188contigS-dermatodea_contig81188:46..225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.9e-18
Seed eggNOG ortholog2880.D7FPW4
Preferred namePCMT1
KEGG koko:K00573
GOsGO:0001101,GO:0001666,GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005903,GO:0006082,GO:0006139,GO:0006464,GO:0006479,GO:0006520,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009116,GO:0009119,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009845,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010340,GO:0010506,GO:0010656,GO:0010660,GO:0010662,GO:0010664,GO:0010665,GO:0010667,GO:0010941,GO:0016020,GO:0016323,GO:0016740,GO:0016741,GO:0017144,GO:0018193,GO:0018197,GO:0019222,GO:0019538,GO:0019752,GO:0030091,GO:0030424,GO:0031253,GO:0031323,GO:0031329,GO:0031526,GO:0031667,GO:0032259,GO:0032501,GO:0032502,GO:0033554,GO:0033555,GO:0033993,GO:0034641,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042221,GO:0042278,GO:0042493,GO:0042594,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043204,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044297,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045471,GO:0046128,GO:0046483,GO:0046498,GO:0046500,GO:0046677,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0051716,GO:0051998,GO:0055086,GO:0060548,GO:0065007,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071944,GO:0072521,GO:0090351,GO:0097305,GO:0097458,GO:0098542,GO:0098590,GO:0098862,GO:0120025,GO:0120038,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657,GO:1901700
EggNOG free text desc.protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
EggNOG OGsCOG2518@1,KOG1661@2759
EC2.1.1.77
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.363821-CDS-S-dermatodea_contig81188:45..2251622925322.363821-CDS-S-dermatodea_contig81188:45..225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81188 46..225 +
1694079854.3769143-CDS-S-dermatodea_contig81188:45..2251694079854.3769143-CDS-S-dermatodea_contig81188:45..225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81188 46..225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81188.16318.1prot_S-dermatodea_contig81188.16318.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81188 46..225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81188.16318.1

>prot_S-dermatodea_contig81188.16318.1 ID=prot_S-dermatodea_contig81188.16318.1|Name=mRNA_S-dermatodea_contig81188.16318.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
TGDGWKGWAEKGPFDAIHVGAAAETIPENLVSQLKVGGRMVVPVGPQSSS
QMLVQVCAF*
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mRNA from alignment at S-dermatodea_contig81188:46..225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81188.16318.1 ID=mRNA_S-dermatodea_contig81188.16318.1|Name=mRNA_S-dermatodea_contig81188.16318.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig81188:46..225+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGGAGACGGATGGAAGGGGTGGGCCGAGAAGGGGCCCTTCGACGCTAT
CCACGTGGGTGCCGCGGCCGAGACCATACCGGAAAACCTCGTGAGCCAGC
TGAAGGTTGGGGGGCGAATGGTGGTGCCGGTTGGTCCGCAGTCTTCGTCG
CAGATGCTCGTGCAGGTGTGTGCGTTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig81188:46..225+

>mRNA_S-dermatodea_contig81188.16318.1 ID=mRNA_S-dermatodea_contig81188.16318.1|Name=mRNA_S-dermatodea_contig81188.16318.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig81188:46..225+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGGAGACGGATGGAAGGGGTGGGCCGAGAAGGGGCCCTTCGACGCTAT
CCACGTGGGTGCCGCGGCCGAGACCATACCGGAAAACCTCGTGAGCCAGC
TGAAGGTTGGGGGGCGAATGGTGGTGCCGGTTGGTCCGCAGTCTTCGTCG
CAGATGCTCGTGCAGGTGTGTGCGTTTTGAACAGGAGACGGATGGAAGGG
GTGGGCCGAGAAGGGGCCCTTCGACGCTATCCACGTGGGTGCCGCGGCCG
AGACCATACCGGAAAACCTCGTGAGCCAGCTGAAGGTTGGGGGGCGAATG
GTGGTGCCGGTTGGTCCGCAGTCTTCGTCGCAGATGCTCGTGCAGGTGTG
TGCGTTTTGA
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