mRNA_S-dermatodea_contig8118.16316.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8118.16316.1
Unique NamemRNA_S-dermatodea_contig8118.16316.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: D8LGE9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE9_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.880e-57
Identity = 89/97 (91.75%), Postives = 95/97 (97.94%), Query Frame = 1
Query:   67 IVIEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLFKPPPEGELGASPELFAECEVRLENGRTLQVYVESVIDSSR 357
            +VIEQPL TIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLK+AQVGN+CCLRLFKPPPEGELGA+PELFA+CEVRL+ GRTLQVYVESVIDSSR
Sbjct:   53 LVIEQPLLTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKIAQVGNACCLRLFKPPPEGELGATPELFAQCEVRLDGGRTLQVYVESVIDSSR 149          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A836CAQ5_9STRA (DUF1681 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.430e-27
Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    7 AEKQGKA--KGDESDGSTEEAAIVIEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNS--------------------CCLRLFKPPPEGELGASPELFAECEVRLENGRTLQVYVESVIDSSR 357
            AEKQ  A  + D  DG  E + +  E PL  IKEVFVYRVPP +A+SGHRAEEWGL NP  TG ++++Q+ +                     C +++F PP EG+LGA+ +LFA C +R+  GR LQ +VE V+DSSR
Sbjct:   26 AEKQDSAAEQADSGDGDGEPSRV--EVPLLYIKEVFVYRVPPAKAASGHRAEEWGLENPALTGFMRISQLDDQSLVTLALTLKEAGAEYAVRWCLVKMFVPPKEGDLGAAAQLFATCCIRVGGGRFLQHFVEHVMDSSR 162          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A6H5L105_9PHAE (DUF1681 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L105_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.490e-27
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
Query:  187 GVLKMAQVGNSCCLRLFKPPPEGELGASPELFAECEVRLENGRTLQVYVESVIDSSR 357
            GVLK+AQVGN+CCLRLFKPPPEGELGA+PELFA+CEV L+ GRTLQVYVESVIDSSR
Sbjct:    4 GVLKIAQVGNACCLRLFKPPPEGELGATPELFAQCEVLLDGGRTLQVYVESVIDSSR 60          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A7S3GU29_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU29_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.160e-21
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   73 IEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLFKPPPEGELGASPE---LFAECEVRLENGRTLQVYVESVIDSSR 357
            +E  L TIKE FVY+VPPLR +SGHRAE+WGLANP+FTG LK+ Q G++  L ++    + +   + E   LF EC + ++ G  +  +V++VIDSSR
Sbjct:   10 VELCLLTIKECFVYKVPPLRTASGHRAEDWGLANPLFTGCLKLFQSGDTLRLAIYAFKDQQKTSITDENIQLFGECPIHVKPGENIIQFVDAVIDSSR 107          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A7S2SVJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVJ6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.980e-20
Identity = 54/106 (50.94%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   55 EEAAIVIEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLFKP--PPEGELGASPEL--FAECEVRLENGRT-LQVYVESVIDSSR 357
            EE   ++E  L T++E FVYRVPPLR+  GHRAE+WGL NPV T VLK+ Q G+   +RLF+P    + E   + EL  FAEC VRL   +  L  +VE V+DSSR
Sbjct:    9 EEDENMVELALLTLEECFVYRVPPLRSHQGHRAEDWGLHNPVVTAVLKVVQRGDELRVRLFEPRKTKQNENLETTELHLFAECPVRLVGVKQQLSHFVEEVVDSSR 114          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A2R5GHP2_9STRA (Adaptin ear-binding coat-associated protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHP2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.210e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   85 LSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLFKPPPEGELGASPELFAECEVRLENGRT-----LQVYVESVIDSSR 357
            L TIKEVFVY++PPL+ S GH A +W L  P  TG L++   G+   L++ + P E   G  P+LFA C ++L+   +     L  +V+SV+DSSR
Sbjct:   20 LLTIKEVFVYKIPPLQGSRGHHAADWNLDKPALTGQLRVISKGDKVYLQILQLP-ESSAGL-PQLFASCPIKLDTDASKPASKLDYFVQSVVDSSR 113          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A7S2ENT2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENT2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.160e-14
Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   67 IVIEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLF--KPPPEGELGASPE-LFAECEVRLENG--RTLQV--YVESVIDSSR 357
            +V+EQ L  ++EVF+Y +PP+++S GHRAE+W LA P+ T  L + +V ++  LR+   +P P    GA+   LFA C++ L +   + LQ+  +VE V+DSSR
Sbjct:   38 VVLEQTLLNVEEVFIYGIPPMKSSGGHRAEDWNLAKPLATCSLLVVRVDSTLELRILSSRPKPNAPKGATESYLFALCKIALAHPSQQHLQIPHWVEPVVDSSR 141          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A6U0FNX7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0FNX7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.290e-13
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   55 EEAAIVIEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLF--KPPPEGELGASPEL-FAECEVRL-------ENGRTLQV---YVESVIDSSR 357
            EE  +V+EQ L  ++EVF+Y +PP+++S GHRAE+W LA P+ T  L++ +  ++  LR+   +P P    GA+    FA C++ +       +N + LQ    +VE+V+DSSR
Sbjct:   28 EEPKVVLEQTLLNVEEVFIYGIPPMKSSGGHRAEDWNLAKPLATCSLEVLRRDSTLELRILSSRPKPNAPKGATETYPFALCQITIAPPDKKDKNKQHLQQMNHWVENVVDSSR 141          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A6V6WJJ5_9STRA (Hypothetical protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A6V6WJJ5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.340e-13
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   49 STEEAAIVIEQPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLF--KPPPEGELGASPE-LFAECEVRLE------NGRTLQVYVESVIDSSR 357
            S+ E  +VI   +  I+E F+YR+PP+ +S GHRAE+W LA+P+ T  L M Q  +S  ++L   +P   G  GA+ + LFA+  + ++      N  T+  + E V DSSR
Sbjct:    3 SSTEDKVVITHKILNIQECFIYRIPPMNSSRGHRAEDWNLASPLATCALDMIQEDDSLIIQLLANRPKSNGPKGATEQYLFAQAIINIKEETSNKNRLTMSHWTEPVTDSSR 114          
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Match: A0A1V9YAE5_9STRA (Adaptin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAE5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.140e-13
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   79 QPLSTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKMAQVGNSCCLRLFKPPPEGELGASPELFAECEVRLENGRTLQVYVESVIDSSR 357
            Q L   K V+VY++P L      RA+ W +  P+ TG LK+ Q  + CC++LF+P  +    A+P LFA C V ++  R+L V+V+  +DSSR
Sbjct:    3 QTLFQEKNVWVYQIPVLTGDP--RADAWDIDKPLLTGSLKVLQTNDDCCVQLFEPSVDD---AAPVLFASCPVDIDAERSLTVFVQYCVDSSR 90          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8118.16316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE9_ECTSI4.880e-5791.75DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CAQ5_9STRA2.430e-2746.04DUF1681 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5L105_9PHAE5.490e-2787.72DUF1681 domain-containing protein (Fragment) n=1 T... [more]
A0A7S3GU29_9STRA4.160e-2147.96Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2SVJ6_9STRA9.980e-2050.94Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2R5GHP2_9STRA5.210e-1542.71Adaptin ear-binding coat-associated protein 1 n=1 ... [more]
A0A7S2ENT2_9STRA2.160e-1441.35Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A6U0FNX7_9STRA3.290e-1337.72Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V6WJJ5_9STRA3.340e-1337.50Hypothetical protein n=1 Tax=Rhizosolenia setigera... [more]
A0A1V9YAE5_9STRA7.140e-1339.78Adaptin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8118contigS-dermatodea_contig8118:160..1782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue7.7e-45
Seed eggNOG ortholog2880.D8LGE9
Preferred nameNECAP1
KEGG koko:K04554,ko:K20069
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005905,GO:0006810,GO:0006897,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0071840,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805
EggNOG free text desc.endocytosis
EggNOG OGsKOG2500@1,KOG2500@2759
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-16_003790.1
EC2.3.2.23
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.2251992-CDS-S-dermatodea_contig8118:159..3321622925322.2251992-CDS-S-dermatodea_contig8118:159..332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8118 160..332 -
1694079854.2848992-CDS-S-dermatodea_contig8118:159..3321694079854.2848992-CDS-S-dermatodea_contig8118:159..332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8118 160..332 -
1622925322.241329-CDS-S-dermatodea_contig8118:1595..17821622925322.241329-CDS-S-dermatodea_contig8118:1595..1782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8118 1596..1782 -
1694079854.2957244-CDS-S-dermatodea_contig8118:1595..17821694079854.2957244-CDS-S-dermatodea_contig8118:1595..1782Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8118 1596..1782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8118.16316.1prot_S-dermatodea_contig8118.16316.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8118 160..1782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8118.16316.1

>prot_S-dermatodea_contig8118.16316.1 ID=prot_S-dermatodea_contig8118.16316.1|Name=mRNA_S-dermatodea_contig8118.16316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
MGAEKQGKAKGDESDGSTEEAAIVIEQPLSTIKEVFVYRVPPLRASSGHR
AEEWGLANPVFTGVLKMAQVGNSCCLRLFKPPPEGELGASPELFAECEVR
LENGRTLQVYVESVIDSSR*
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mRNA from alignment at S-dermatodea_contig8118:160..1782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8118.16316.1 ID=mRNA_S-dermatodea_contig8118.16316.1|Name=mRNA_S-dermatodea_contig8118.16316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1623bp|location=Sequence derived from alignment at S-dermatodea_contig8118:160..1782- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGCGGAAAAACAAGGCAAAGCAAAAGGCGACGAAAGCGACGGGAG CACAGAGGAAGCGGCAATCGTGATAGAGCAGCCGCTGTCCACGATCAAGG AAGTCTTCGTGTACCGCGTGCCCCCTCTCAGGGCTTCGTCAGGGCACCGC GCGGAGGAGTGGGGCTTGGCGAATCCGGTATTCACGGGTGAGATGAGCTT CGCCGCACGGTCATGATGTTCCTCAGACCGATCCCGTCATATGGTATCAT ACTTGTATTATTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGTCGG GTCGGATTATGCCGATCGGCTATACGTGTGCAAATCAAATCAATCAAAAA TCAAATCAATTCAAATGATATTATACTTCATATACCTGGGTGTCTTTTGC GTGTGAAAGCTGGCTGCAAATAAGTTGATGTTCAGGCGAACAAGCTCAGA GGCGCAATCCCGTCTGTGTTTGACCCGTCCGTGCTTTACGCTGGCTTTTT GAATCTGGTGGTGCCGTCAACACAGACAGTGGCCCTCCCTGCACGTGCAC GCGCAGCATTCTAAAAATGTGGTGGGTACGTGTGCGTTACTCTGCCTGTG TACCTGAAACCCACAACTCGCAACGGACTTGATTGATTGTCCTCCTGAAT TGAAAAGTCAAGAAGCGCAAATTGCGGCAAATATGCCTTACTGAGAGAGC AAAGGACTACAAGTACATACTTTCAGTTTCCCCTGAACCAGTGTGCTCGT GAGTTAGGGATGTACATGGGTATTGCAATTGAAGTATTGCACCATAGACG TACAGTATCATACGCGTACGCAGCTCTGGTGTATCACAGCACGGATGCAT TTGTCACCATATGGTACGCGTACGACAACCTATCCGCAGCAGAACACAGC ACACAGCAGGCCAGCGTGTAAAGCAGAAACTGTTGTACCAGCGATGCATA CAGCTCTCCGCGAAGACGCTGTGAAGCGCGCGAGAGGGTCCGCAAGGCGG AGCATGCACTGCTGTTGAATCCTTAGGCGCACACTCTGCACGGCGAGGGC CCGCCTACAAAGCACTTGGCCTGATGACACCTGTAGGTGGCACCGGCGAC CAACCCAGGCTCGACGAACCATCCTTGACGTAAAACCTTACCGAAACCTT ACCGGACATTCGCTTCGAAACATTACAATTGTATGGAACCCAAGAAAGTT AAGAAAGTAAAAAGTTCACCCGAGCAGACTCACACTCCAGGCCTGCCCTT TTGCACCTCCTGAGACACACCGCTGCGGGCAAATCGAGGGGCACCAGAAG ATACCTGGTACACAGTTTGTTATTTTTTCCGACTCTGTTGCTAAATACCC AGCGTGAAGTGACGCCCAGATCCCGACATACCACTGTTGCAACGCGCTCA CACACCGTGCGTGCTCCATACCTCCTACGAATACATAACATACACAACAG GCGTCCTGAAAATGGCCCAGGTCGGCAACTCTTGCTGCTTGCGTCTCTTC AAGCCACCTCCGGAAGGAGAGCTGGGAGCGTCGCCCGAGCTATTCGCGGA GTGCGAGGTGCGCCTGGAAAACGGACGCACCCTCCAGGTGTACGTGGAGT CCGTCATCGATTCCTCTCGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8118:160..1782-

>mRNA_S-dermatodea_contig8118.16316.1 ID=mRNA_S-dermatodea_contig8118.16316.1|Name=mRNA_S-dermatodea_contig8118.16316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig8118:160..1782- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGCGGAAAAACAAGGCAAAGCAAAAGGCGACGAAAGCGACGGGAG
CACAGAGGAAGCGGCAATCGTGATAGAGCAGCCGCTGTCCACGATCAAGG
AAGTCTTCGTGTACCGCGTGCCCCCTCTCAGGGCTTCGTCAGGGCACCGC
GCGGAGGAGTGGGGCTTGGCGAATCCGGTATTCACGGATGGGAGCGGAAA
AACAAGGCAAAGCAAAAGGCGACGAAAGCGACGGGAGCACAGAGGAAGCG
GCAATCGTGATAGAGCAGCCGCTGTCCACGATCAAGGAAGTCTTCGTGTA
CCGCGTGCCCCCTCTCAGGGCTTCGTCAGGGCACCGCGCGGAGGAGTGGG
GCTTGGCGAATCCGGTATTCACGGGCGTCCTGAAAATGGCCCAGGTCGGC
AACTCTTGCTGCTTGCGTCTCTTCAAGCCACCTCCGGAAGGAGAGCTGGG
AGCGTCGCCCGAGCTATTCGCGGAGTGCGAGGTGCGCCTGGAAAACGGAC
GCACCCTCCAGGTGTACGTGGAGTCCGTCATCGATTCCTCTCGGTAAGCG
TCCTGAAAATGGCCCAGGTCGGCAACTCTTGCTGCTTGCGTCTCTTCAAG
CCACCTCCGGAAGGAGAGCTGGGAGCGTCGCCCGAGCTATTCGCGGAGTG
CGAGGTGCGCCTGGAAAACGGACGCACCCTCCAGGTGTACGTGGAGTCCG
TCATCGATTCCTCTCGGTAA
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