mRNA_S-dermatodea_contig81159.16314.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 251 bits (642), Expect = 1.110e-76 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1
Query: 1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS
Sbjct: 260 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 383
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.050e-72 Identity = 115/124 (92.74%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
TPLVSAFELGGFYSPRITRLLL AGADVASRVRYEGIEGDCVMHDTPL IAES LPLWET + SEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRV LA LS
Sbjct: 260 TPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWETYGETSEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVALAPLS 383
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 236 bits (602), Expect = 4.360e-71 Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 1
Query: 1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWET + SEDVEFGLKGVIRLLKQVDAVHA SWCWP+ALEKSTPIVRMLPGLKRRATKPRV+LAALS
Sbjct: 264 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETYGETSEDVEFGLKGVIRLLKQVDAVHAISWCWPNALEKSTPIVRMLPGLKRRATKPRVVLAALS 387
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 112 bits (281), Expect = 6.920e-27 Identity = 72/138 (52.17%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRY-----EGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWP---------SALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
TPLVS F LG F++PR RLLL+AGAD S VR+ EG E + + TPL +A S + E V GLKGVIRLL+Q +AVHA SW WP ++ +KST I RMLP LKRRA KPRVLLAA+S
Sbjct: 275 TPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFI-GTPLELATSYFRRFSPMRVHREMVR-GLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMS 410
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.400e-23 Identity = 66/138 (47.83%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRY-----EGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWP---------SALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
TPLVS F LG F++P RLLL+AGAD S VR+ EG E + + TPL +A S + + ++ LKGVIRLL+Q +AVH+ SW WP ++ +K T I RM+P LKRRA KPRVLLAALS
Sbjct: 329 TPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFI-GTPLDLATSYFRRFSS-MSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALS 464
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.260e-21 Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 4 PLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEW-DASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVR--MLPGLKRRATKPRVLLAAL 369
PL+ AF G ++PRITR LLD GAD ++VR+ GIEG M D PL A+ L +T + DA D GLKGV+RLL+Q AVHA SW WP+ +++T IVR + PG ++P VLLAA+
Sbjct: 297 PLLCAFGTGRGHAPRITRFLLDHGADTKNKVRF-GIEGLGEMIDEPLVAAKITLRHEQTYFKDADVDRVDGLKGVVRLLQQEAAVHANSWAWPTDTDRATKIVRKPIRPG-----SRPEVLLAAM 415
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.080e-20 Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 7 LVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEW-DASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLK-RRATKPRVLLAAL 369
LV AF G Y+PR+TR LLD GAD +VR+E I+G + PL A+ IL +T + DA E+ GLK V+RLL+Q DAVHA SW WP +++T IVR P K +P VLLAA+
Sbjct: 285 LVCAFGAGRGYAPRMTRFLLDHGADTKKKVRFE-IKGLGEIAGGPLVAAKIILRHEQTHFEDADEEGVDGLKEVVRLLRQEDAVHANSWAWPIDTDRATKIVRKTPAFKIHPGPRPCVLLAAM 406
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 9.060e-19 Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 49 ITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
++R L+ AGA V +R G++G TPL +A A++ KG++ L+ VDAVHA SWCWPSALEKS PIVR+LPGLKRRATKP VLLAALS
Sbjct: 87 VSRALVKAGAGVEAR----GVDG------TPLHVA------------AAKGFH---KGMVMLI-HVDAVHAISWCWPSALEKSKPIVRVLPGLKRRATKPCVLLAALS 168
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 3.560e-15 Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = 1
Query: 4 PLVSAFELG--GFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFG-LKGVIRLLKQVDAVHATSWCWPSALEKS----------------TPIVRMLPGLKRRATKPRVLLAALS 372
PL+ + ++G PRI RLL+D+GAD S VRY +G DTPL IL ETE ++ + G L+ V RLL +V+AVHATSW WPS+ S T + L L+RRAT+ VLL ALS
Sbjct: 229 PLLGSIDIGIIKLCFPRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIRILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEPTRLTSTLQILRRRATRRGVLLRALS 370
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13 Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 3
Query: 216 EGCHTLAEAGGCSSRDLLVLAERAREINADRSHAAGSEAQGDEASRA--LGGPVQ 374
+G L AGGCSSRDLLVLAER EINADRSHAAGSEAQGDEAS LGGPVQ
Sbjct: 118 KGMVMLIHAGGCSSRDLLVLAERLGEINADRSHAAGSEAQGDEASGGCGLGGPVQ 172 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig81159.16314.1 >prot_S-dermatodea_contig81159.16314.1 ID=prot_S-dermatodea_contig81159.16314.1|Name=mRNA_S-dermatodea_contig81159.16314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp MGCFGRRGVRAEGCHTLAEAGGCSSRDLLVLAERAREINADRSHAAGSEAback to top mRNA from alignment at S-dermatodea_contig81159:11..384+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig81159.16314.1 ID=mRNA_S-dermatodea_contig81159.16314.1|Name=mRNA_S-dermatodea_contig81159.16314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=374bp|location=Sequence derived from alignment at S-dermatodea_contig81159:11..384+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig81159:11..384+ >mRNA_S-dermatodea_contig81159.16314.1 ID=mRNA_S-dermatodea_contig81159.16314.1|Name=mRNA_S-dermatodea_contig81159.16314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig81159:11..384+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |