mRNA_S-dermatodea_contig81159.16314.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81159.16314.1
Unique NamemRNA_S-dermatodea_contig81159.16314.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.110e-76
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1
Query:    1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
            TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS
Sbjct:  260 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 383          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.050e-72
Identity = 115/124 (92.74%), Postives = 116/124 (93.55%), Query Frame = 1
Query:    1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
            TPLVSAFELGGFYSPRITRLLL AGADVASRVRYEGIEGDCVMHDTPL IAES LPLWET  + SEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRV LA LS
Sbjct:  260 TPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWETYGETSEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVALAPLS 383          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 4.360e-71
Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 1
Query:    1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
            TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWET  + SEDVEFGLKGVIRLLKQVDAVHA SWCWP+ALEKSTPIVRMLPGLKRRATKPRV+LAALS
Sbjct:  264 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETYGETSEDVEFGLKGVIRLLKQVDAVHAISWCWPNALEKSTPIVRMLPGLKRRATKPRVVLAALS 387          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.920e-27
Identity = 72/138 (52.17%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRY-----EGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWP---------SALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
            TPLVS F LG F++PR  RLLL+AGAD  S VR+     EG E +  +  TPL +A S    +       E V  GLKGVIRLL+Q +AVHA SW WP         ++ +KST I RMLP LKRRA KPRVLLAA+S
Sbjct:  275 TPLVSTFNLGSFHAPRFARLLLEAGADATSGVRFPCDSDEGEEDEDFI-GTPLELATSYFRRFSPMRVHREMVR-GLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMS 410          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.400e-23
Identity = 66/138 (47.83%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    1 TPLVSAFELGGFYSPRITRLLLDAGADVASRVRY-----EGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWP---------SALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
            TPLVS F LG F++P   RLLL+AGAD  S VR+     EG E +  +  TPL +A S    + +      ++   LKGVIRLL+Q +AVH+ SW WP         ++ +K T I RM+P LKRRA KPRVLLAALS
Sbjct:  329 TPLVSTFNLGSFHAPGFARLLLEAGADATSGVRFPCDSDEGEEDEGFI-GTPLDLATSYFRRFSS-MSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALS 464          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.260e-21
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    4 PLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEW-DASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVR--MLPGLKRRATKPRVLLAAL 369
            PL+ AF  G  ++PRITR LLD GAD  ++VR+ GIEG   M D PL  A+  L   +T + DA  D   GLKGV+RLL+Q  AVHA SW WP+  +++T IVR  + PG     ++P VLLAA+
Sbjct:  297 PLLCAFGTGRGHAPRITRFLLDHGADTKNKVRF-GIEGLGEMIDEPLVAAKITLRHEQTYFKDADVDRVDGLKGVVRLLQQEAAVHANSWAWPTDTDRATKIVRKPIRPG-----SRPEVLLAAM 415          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.080e-20
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    7 LVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEW-DASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLK-RRATKPRVLLAAL 369
            LV AF  G  Y+PR+TR LLD GAD   +VR+E I+G   +   PL  A+ IL   +T + DA E+   GLK V+RLL+Q DAVHA SW WP   +++T IVR  P  K     +P VLLAA+
Sbjct:  285 LVCAFGAGRGYAPRMTRFLLDHGADTKKKVRFE-IKGLGEIAGGPLVAAKIILRHEQTHFEDADEEGVDGLKEVVRLLRQEDAVHANSWAWPIDTDRATKIVRKTPAFKIHPGPRPCVLLAAM 406          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.060e-19
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   49 ITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALS 372
            ++R L+ AGA V +R    G++G      TPL +A            A++      KG++ L+  VDAVHA SWCWPSALEKS PIVR+LPGLKRRATKP VLLAALS
Sbjct:   87 VSRALVKAGAGVEAR----GVDG------TPLHVA------------AAKGFH---KGMVMLI-HVDAVHAISWCWPSALEKSKPIVRVLPGLKRRATKPCVLLAALS 168          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.560e-15
Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    4 PLVSAFELG--GFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETEWDASEDVEFG-LKGVIRLLKQVDAVHATSWCWPSALEKS----------------TPIVRMLPGLKRRATKPRVLLAALS 372
            PL+ + ++G      PRI RLL+D+GAD  S VRY   +G     DTPL     IL   ETE    ++ + G L+ V RLL +V+AVHATSW WPS+   S                T +   L  L+RRAT+  VLL ALS
Sbjct:  229 PLLGSIDIGIIKLCFPRIVRLLVDSGADTESAVRYTYRDGLVGFSDTPLCRTIRILRDVETEGKDDKEEQLGRLEAVRRLLLRVEAVHATSWVWPSSAAGSVAQDAAEVKAGAETEPTRLTSTLQILRRRATRRGVLLRALS 370          
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  216 EGCHTLAEAGGCSSRDLLVLAERAREINADRSHAAGSEAQGDEASRA--LGGPVQ 374
            +G   L  AGGCSSRDLLVLAER  EINADRSHAAGSEAQGDEAS    LGGPVQ
Sbjct:  118 KGMVMLIHAGGCSSRDLLVLAERLGEINADRSHAAGSEAQGDEASGGCGLGGPVQ 172          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81159.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE1.110e-76100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.050e-7292.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE4.360e-7194.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE6.920e-2752.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.400e-2347.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE8.260e-2148.80Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LP44_ECTSI2.080e-2047.97EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI9.060e-1951.85EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1Y3_ECTSI3.560e-1540.85EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7G449_ECTSI1.400e-1378.18EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81159contigS-dermatodea_contig81159:11..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue3e-11
Seed eggNOG ortholog2880.D7G449
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.0591342-UTR-S-dermatodea_contig81159:10..1921622925322.0591342-UTR-S-dermatodea_contig81159:10..192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81159 11..192 +
1694079854.1648302-UTR-S-dermatodea_contig81159:10..1921694079854.1648302-UTR-S-dermatodea_contig81159:10..192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81159 11..192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925322.0708077-CDS-S-dermatodea_contig81159:192..3841622925322.0708077-CDS-S-dermatodea_contig81159:192..384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81159 193..384 +
1694079854.185417-CDS-S-dermatodea_contig81159:192..3841694079854.185417-CDS-S-dermatodea_contig81159:192..384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81159 193..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81159.16314.1prot_S-dermatodea_contig81159.16314.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81159 193..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81159.16314.1

>prot_S-dermatodea_contig81159.16314.1 ID=prot_S-dermatodea_contig81159.16314.1|Name=mRNA_S-dermatodea_contig81159.16314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MGCFGRRGVRAEGCHTLAEAGGCSSRDLLVLAERAREINADRSHAAGSEA
QGDEASRALGGPVQ
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mRNA from alignment at S-dermatodea_contig81159:11..384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81159.16314.1 ID=mRNA_S-dermatodea_contig81159.16314.1|Name=mRNA_S-dermatodea_contig81159.16314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=374bp|location=Sequence derived from alignment at S-dermatodea_contig81159:11..384+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCCTCTTGTGAGCGCATTTGAGCTGGGGGGCTTCTATTCGCCCAGAAT CACGCGCTTGCTCCTTGACGCCGGCGCGGACGTGGCATCGCGCGTTCGGT ATGAAGGAATCGAAGGAGATTGTGTAATGCACGATACGCCCTTGGCGATC GCCGAATCGATTCTACCTTTGTGGGAGACCGAATGGGATGCTTCGGAAGA CGTGGAGTTCGGGCTGAAGGGTGTCATACGCTTGCTGAAGCAGGTGGATG CAGTTCACGCGACCTCCTGGTGTTGGCCGAGCGCGCTCGAGAAATCAACG CCGATCGTTCGCATGCTGCCGGGTCTGAAGCGCAGGGCGACGAAGCCTCG CGTGCTCTTGGCGGCCCTGTCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig81159:11..384+

>mRNA_S-dermatodea_contig81159.16314.1 ID=mRNA_S-dermatodea_contig81159.16314.1|Name=mRNA_S-dermatodea_contig81159.16314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig81159:11..384+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGATGCTTCGGAAGACGTGGAGTTCGGGCTGAAGGGTGTCATACGCT
TGCTGAAGCAGGTGGATGCAGTTCACGCGACCTCCTGGTGTTGGCCGAGC
GCGCTCGAGAAATCAACGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCG
CAGGGCGACGAAGCCTCGCGTGCTCTTGGCGGCCCTGTCCAGATGGGATG
CTTCGGAAGACGTGGAGTTCGGGCTGAAGGGTGTCATACGCTTGCTGAAG
CAGGTGGATGCAGTTCACGCGACCTCCTGGTGTTGGCCGAGCGCGCTCGA
GAAATCAACGCCGATCGTTCGCATGCTGCCGGGTCTGAAGCGCAGGGCGA
CGAAGCCTCGCGTGCTCTTGGCGGCCCTGTCCAG
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