mRNA_S-dermatodea_contig8114.16311.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8114.16311.1
Unique NamemRNA_S-dermatodea_contig8114.16311.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8114.16311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8114contigS-dermatodea_contig8114:6925..7526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.9394703-CDS-S-dermatodea_contig8114:6924..72271622925321.9394703-CDS-S-dermatodea_contig8114:6924..7227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8114 6925..7227 +
1694079854.1209872-CDS-S-dermatodea_contig8114:6924..72271694079854.1209872-CDS-S-dermatodea_contig8114:6924..7227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8114 6925..7227 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.9544342-UTR-S-dermatodea_contig8114:7227..75261622925321.9544342-UTR-S-dermatodea_contig8114:7227..7526Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8114 7228..7526 +
1694079854.1310236-UTR-S-dermatodea_contig8114:7227..75261694079854.1310236-UTR-S-dermatodea_contig8114:7227..7526Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8114 7228..7526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8114.16311.1prot_S-dermatodea_contig8114.16311.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8114 6925..7227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8114.16311.1

>prot_S-dermatodea_contig8114.16311.1 ID=prot_S-dermatodea_contig8114.16311.1|Name=mRNA_S-dermatodea_contig8114.16311.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
VAECSCSCGISEVEVVVLSTGREFFVSFSSCCFKLRLPKPNADPIRLLRG
TIFNRSKFATSINLEISKLAGIYRELKVDVFEYGHISCFLLFLRFLLLFE
*
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mRNA from alignment at S-dermatodea_contig8114:6925..7526+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8114.16311.1 ID=mRNA_S-dermatodea_contig8114.16311.1|Name=mRNA_S-dermatodea_contig8114.16311.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=602bp|location=Sequence derived from alignment at S-dermatodea_contig8114:6925..7526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCCGAATGCAGTTGCAGCTGTGGAATTTCCGAAGTAGAAGTAGTTGT
ATTGAGCACTGGGCGTGAGTTTTTTGTGAGTTTCAGTTCGTGCTGCTTCA
AGCTCCGGCTGCCAAAACCGAACGCAGATCCTATTCGGCTATTACGGGGG
ACCATATTTAACAGGTCCAAATTTGCCACAAGTATCAACCTAGAAATATC
TAAATTGGCTGGAATTTATCGAGAATTGAAGGTCGATGTTTTTGAATATG
GCCATATTTCGTGTTTTTTGCTTTTCCTGAGATTTTTGTTGTTGTTTGAG
TAGTCATGGTCAGAATAGTCGGGTATTATTGACCATGAGATTTGGAACTA
TTAATATGTTCCTCCGTAATAGCTACTACCGTAACCCTACTCTCCCATCA
ATCATGGGTAGGTTCTAAGCCCCACCAGGACTCTTCGACGACGGCTGCTG
GCGTTCACCACGGCAACTTTTGTATTGTAGCAGAAAAGGGAGGGGGGGGA
TTTTTGGAATGCCTTGCTCTTAATTTGTGTGTGCGTGGCTCTGGAGCCGC
GCTTGTGGCAGTAGGAGTAGCCAAACACCAACCCCCTCCGTGATGTAACC
CC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8114:6925..7526+

>mRNA_S-dermatodea_contig8114.16311.1 ID=mRNA_S-dermatodea_contig8114.16311.1|Name=mRNA_S-dermatodea_contig8114.16311.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig8114:6925..7526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCCGAATGCAGTTGCAGCTGTGGAATTTCCGAAGTAGAAGTAGTTGT
ATTGAGCACTGGGCGTGAGTTTTTTGTGAGTTTCAGTTCGTGCTGCTTCA
AGCTCCGGCTGCCAAAACCGAACGCAGATCCTATTCGGCTATTACGGGGG
ACCATATTTAACAGGTCCAAATTTGCCACAAGTATCAACCTAGAAATATC
TAAATTGGCTGGAATTTATCGAGAATTGAAGGTCGATGTTTTTGAATATG
GCCATATTTCGTGTTTTTTGCTTTTCCTGAGATTTTTGTTGTTGTTTGAG
TAGGTTGCCGAATGCAGTTGCAGCTGTGGAATTTCCGAAGTAGAAGTAGT
TGTATTGAGCACTGGGCGTGAGTTTTTTGTGAGTTTCAGTTCGTGCTGCT
TCAAGCTCCGGCTGCCAAAACCGAACGCAGATCCTATTCGGCTATTACGG
GGGACCATATTTAACAGGTCCAAATTTGCCACAAGTATCAACCTAGAAAT
ATCTAAATTGGCTGGAATTTATCGAGAATTGAAGGTCGATGTTTTTGAAT
ATGGCCATATTTCGTGTTTTTTGCTTTTCCTGAGATTTTTGTTGTTGTTT
GAGTAG
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