mRNA_S-dermatodea_contig81135.16310.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81135.16310.1
Unique NamemRNA_S-dermatodea_contig81135.16310.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A6H5JQ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ42_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.110e-32
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQ 198
            DYFNLQQLMEEASSSRDA RTSAVVSALVQHIM+SWREHFARAVAMKFNCFFLMPFVDDFP YLR+
Sbjct:  496 DYFNLQQLMEEASSSRDAERTSAVVSALVQHIMLSWREHFARAVAMKFNCFFLMPFVDDFPSYLRR 561
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: D8LDP8_ECTSI (ARC5, dynamin-related protein involved in plastid division n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.110e-32
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQ 198
            DYFNLQQLMEEASSSRDA RTSAVVSALVQHIM+SWREHFARAVAMKFNCFFLMPFVDDFP YLR+
Sbjct:  684 DYFNLQQLMEEASSSRDAERTSAVVSALVQHIMLSWREHFARAVAMKFNCFFLMPFVDDFPSYLRR 749
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A835Z9B7_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.670e-25
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSR-DAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLR 195
            DYF+L QLMEEA+ +R +A RT AVV+ALV+H+M SWREHFAR+VAMKFNCFFLMPFVD FPFYLR
Sbjct:  720 DYFDLMQLMEEAACTRSNAERTGAVVAALVRHVMASWREHFARSVAMKFNCFFLMPFVDTFPFYLR 785
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A835Z2U6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.990e-25
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSR-DAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLR 195
            DYF+L QLMEEA+ +R +A RT AVV+ALV+H+M SWREHFAR VAMKFNCFFLMPFVD FPFYLR
Sbjct:  394 DYFDLMQLMEEAACTRSNAERTGAVVAALVRHVMASWREHFARGVAMKFNCFFLMPFVDAFPFYLR 459
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A7R9UEV7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEV7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.270e-25
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQVKAR 210
            D+ +L QLMEE + SRD  RTSAVVSALVQHI+ SWR  FA+A+ MKFNCFF+MPFVD+FPFYLR    R
Sbjct:   24 DWSSLLQLMEEVACSRDENRTSAVVSALVQHIIRSWRTQFAKAITMKFNCFFMMPFVDEFPFYLRNELDR 93
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A4D9DCK2_9STRA (Dynamin-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCK2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.440e-24
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQVKAR 210
            D  +L QLMEEA+  R++ RT+AVVSALVQHI+ SWREHFAR+VAMKFNCFFLMPF+D+FPFYLRQ   R
Sbjct:  770 DNRDLLQLMEEAACVRNSNRTNAVVSALVQHIIRSWREHFARSVAMKFNCFFLMPFIDEFPFYLRQELDR 839
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A835YPI8_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.270e-23
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSR-DAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLR 195
            DY +L QLMEEA+ +R +A RT AVV+ALV+H+M SWREHFAR+VAMKFNCFFLMPFVD FPFYLR
Sbjct:  670 DYLDLMQLMEEAACTRSNADRTGAVVAALVRHVMGSWREHFARSVAMKFNCFFLMPFVDTFPFYLR 735
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A7S1YZI6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZI6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.240e-21
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQ 198
            DY+NL QLMEEA+SSRDA RT+ VV  LVQHI+V WRE F ++V  KFNC+F++PFVD+F  YLRQ
Sbjct:  411 DYYNLLQLMEEAASSRDANRTNLVVGGLVQHIVVQWREAFGKSVTTKFNCYFMLPFVDEFHRYLRQ 476
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A7S2R4H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4H5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.060e-20
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQVKAR 210
            DY+NL Q++EEA+ SRDA RT+ VV  LVQHI+  WRE FAR+V  KFNC+F++PFVD+F  +LRQ   R
Sbjct:  871 DYYNLLQVIEEAAMSRDANRTNLVVGGLVQHIIAQWRETFARSVTTKFNCYFMLPFVDEFHMFLRQELQR 940
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BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Match: A0A7S4N729_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N729_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.450e-20
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 DYFNLQQLMEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVDDFPFYLRQ 198
            DY+NL QLMEEA+ SRDA RT+ VV  LVQHI+  WR+ F R V  KFNCFFLMPFVD+F  +LR 
Sbjct:  432 DYYNLLQLMEEAACSRDANRTNLVVGGLVQHIVAQWRQSFGRTVTTKFNCFFLMPFVDEFHRFLRD 497
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81135.16310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ42_9PHAE2.110e-3293.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDP8_ECTSI2.110e-3293.94ARC5, dynamin-related protein involved in plastid ... [more]
A0A835Z9B7_9STRA5.670e-2577.27Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A835Z2U6_9STRA7.990e-2577.27Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7R9UEV7_9STRA9.270e-2568.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DCK2_9STRA1.440e-2472.86Dynamin-type G domain-containing protein n=2 Tax=M... [more]
A0A835YPI8_9STRA1.270e-2375.76Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A7S1YZI6_9STRA3.240e-2166.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R4H5_9STRA3.060e-2060.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4N729_9STRA7.450e-2065.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81135contigS-dermatodea_contig81135:131..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D8LDP8
Preferred nameARC5
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006996,GO:0007031,GO:0007623,GO:0008017,GO:0008092,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009657,GO:0009658,GO:0009707,GO:0009941,GO:0009987,GO:0010020,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016559,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0042170,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048511,GO:0071840,GO:0098588,GO:0098805
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size189
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.8951056-UTR-S-dermatodea_contig81135:130..1541622925321.8951056-UTR-S-dermatodea_contig81135:130..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81135 131..154 +
1694079854.0925257-UTR-S-dermatodea_contig81135:130..1541694079854.0925257-UTR-S-dermatodea_contig81135:130..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig81135 131..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.905227-CDS-S-dermatodea_contig81135:154..3431622925321.905227-CDS-S-dermatodea_contig81135:154..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81135 155..343 +
1694079854.1090064-CDS-S-dermatodea_contig81135:154..3431694079854.1090064-CDS-S-dermatodea_contig81135:154..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81135 155..343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81135.16310.1prot_S-dermatodea_contig81135.16310.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81135 155..343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81135.16310.1

>prot_S-dermatodea_contig81135.16310.1 ID=prot_S-dermatodea_contig81135.16310.1|Name=mRNA_S-dermatodea_contig81135.16310.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
MEEASSSRDAARTSAVVSALVQHIMVSWREHFARAVAMKFNCFFLMPFVD
DFPFYLRQVKAR*
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mRNA from alignment at S-dermatodea_contig81135:131..343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81135.16310.1 ID=mRNA_S-dermatodea_contig81135.16310.1|Name=mRNA_S-dermatodea_contig81135.16310.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at S-dermatodea_contig81135:131..343+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTACTTCAACTTGCAGCAGCTGATGGAAGAGGCCAGCAGCTCGAGGGA
CGCCGCGCGAACCTCCGCCGTCGTGTCCGCCCTGGTGCAGCACATCATGG
TCAGCTGGAGGGAGCACTTCGCGCGCGCGGTGGCGATGAAGTTCAACTGC
TTCTTCCTCATGCCCTTCGTCGACGACTTCCCGTTCTACCTGCGACAGGT
GAAAGCCCGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig81135:131..343+

>mRNA_S-dermatodea_contig81135.16310.1 ID=mRNA_S-dermatodea_contig81135.16310.1|Name=mRNA_S-dermatodea_contig81135.16310.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig81135:131..343+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGAGGCCAGCAGCTCGAGGGACGCCGCGCGAACCTCCGCCGTCGT
GTCCGCCCTGGTGCAGCACATCATGGTCAGCTGGAGGGAGCACTTCGCGC
GCGCGGTGGCGATGAAGTTCAACTGCTTCTTCCTCATGCCCTTCGTCGAC
GACTTCCCGTTCTACCTGCGACAGGTGAAAGCCCGATAAATGGAAGAGGC
CAGCAGCTCGAGGGACGCCGCGCGAACCTCCGCCGTCGTGTCCGCCCTGG
TGCAGCACATCATGGTCAGCTGGAGGGAGCACTTCGCGCGCGCGGTGGCG
ATGAAGTTCAACTGCTTCTTCCTCATGCCCTTCGTCGACGACTTCCCGTT
CTACCTGCGACAGGTGAAAGCCCGATAA
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