prot_S-dermatodea_contig8103.16298.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8103.16298.1
Unique Nameprot_S-dermatodea_contig8103.16298.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length212
Homology
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BLAST of mRNA_S-dermatodea_contig8103.16298.1 vs. uniprot
Match: D7FJN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN7_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.950e-102
Identity = 138/221 (62.44%), Postives = 161/221 (72.85%), Query Frame = 0 
Query:    1 LVTLVTLALCANVLVGPSLRWRPVFISGLLGSIVACEYYYLFFAVMKVPKDWATNRGVSMQRWDCLQSTKGGKSGEGSTSSFDINPCFCLSDGYCKNDVTGLWMDPLFCPRDGSGSCWGADRVEIPLYIESGRDCAAGQGTSCTLKEPCTPCDAAAVEAYITAG---------VSGASRCRRCGVGNRGDCNFVIDEGPYCWKELGSTEIEPCSVCCTEPQ 212
            L+TLV LAL ANV+VGPS+RWRPVF+SGLL +IV CEYYYLFFA++KVP DWA+ RG S++RWDCLQSTKGGK  + S SSFDINPCFC    +CKN  +G W+DP  CP+DG+  CW  +   + LYI+S RDC A QG SC+L  PCTPC    +E YI A            G SRCR CG GN G CNFVI EGPYCWKE GS E+EPCSVCCTEP+
Sbjct:   15 LLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVICEYYYLFFAIVKVPTDWASRRGASIERWDCLQSTKGGKRADSSGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVNLYIKSTRDCTAAQGPSCSLAAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVIGEGPYCWKEPGSREVEPCSVCCTEPE 235
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BLAST of mRNA_S-dermatodea_contig8103.16298.1 vs. uniprot
Match: A0A7S2CU36_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU36_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.560e-31
Identity = 84/237 (35.44%), Postives = 109/237 (45.99%), Query Frame = 0 
Query:   16 GPSLRWRPVFISGLLGSIVACEYYYLFFAVMK-VPKDWATNRGVSMQRWDCLQSTKGGKSG-----EGSTSSFDINPCFCLSDGYCK-----NDVTGLWMDPLFCPRDGSGSC-----WGADRVEIPLY-----------------IESG--RDCAAGQGTSCTLKEPCTPCDAAAVEAYITAGVSGASRCRRCGVGNRGDCNFVIDEGPYCWKEL------GSTEIEPCSVCCTEP 211
            G   +WR  F   LL  +V  +YY +F   M+  P D     GV   RWDCLQSTKGGK       EGS  +  +NPC+C ++  CK      +  G    PL CP     +C     + A + E                     ++ G  RDC  GQ   CT ++PC+PC+   V A+      G +RC  C V N GDCNFV   GPYCW+        GS ++ PC  CCTEP
Sbjct:  147 GVGSKWRSNFSGSLLLGMVVIQYYSVFMTAMQNYPYD-----GVEAYRWDCLQSTKGGKISRAMFYEGSERA--LNPCYCHANATCKYKSGVKEYNG--SHPLGCPLTDEFTCLEQYAFQAFKTETXXXXXXXXXXKVWPYIAREALDEGFRRDCKKGQAARCTRQDPCSPCELEKVLAF------GVTRCETCSVFNNGDCNFVPGVGPYCWESPDYDERGGSRKVVPCKQCCTEP 368
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8103.16298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJN7_ECTSI1.950e-10262.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CU36_9STRA2.560e-3135.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..212
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availableTMHMMTMhelixcoord: 24..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8103contigS-dermatodea_contig8103:2010..7591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8103.16298.1mRNA_S-dermatodea_contig8103.16298.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8103 2010..7591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8103.16298.1 ID=prot_S-dermatodea_contig8103.16298.1|Name=mRNA_S-dermatodea_contig8103.16298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=212bp
LVTLVTLALCANVLVGPSLRWRPVFISGLLGSIVACEYYYLFFAVMKVPK
DWATNRGVSMQRWDCLQSTKGGKSGEGSTSSFDINPCFCLSDGYCKNDVT
GLWMDPLFCPRDGSGSCWGADRVEIPLYIESGRDCAAGQGTSCTLKEPCT
PCDAAAVEAYITAGVSGASRCRRCGVGNRGDCNFVIDEGPYCWKELGSTE
IEPCSVCCTEPQ
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