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Homology
BLAST of mRNA_S-dermatodea_contig8103.16298.1 vs. uniprot
Match: D7FJN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN7_ECTSI) HSP 1 Score: 305 bits (780), Expect = 1.950e-102 Identity = 138/221 (62.44%), Postives = 161/221 (72.85%), Query Frame = 1
Query: 1 LVTLVTLALCANVLVGPSLRWRPVFISGLLGSIVACEYYYLFFAVMKVPKDWATNRGVSMQRWDCLQSTKGGKSGEGSTSSFDINPCFCLSDGYCKNDVTGLWMDPLFCPRDGSGSCWGADRVEIPLYIESGRDCAAGQGTSCTLKEPCTPCDAAAVEAYITAG---------VSGASRCRRCGVGNRGDCNFVIDEGPYCWKELGSTEIEPCSVCCTEPQ 636
L+TLV LAL ANV+VGPS+RWRPVF+SGLL +IV CEYYYLFFA++KVP DWA+ RG S++RWDCLQSTKGGK + S SSFDINPCFC +CKN +G W+DP CP+DG+ CW + + LYI+S RDC A QG SC+L PCTPC +E YI A G SRCR CG GN G CNFVI EGPYCWKE GS E+EPCSVCCTEP+
Sbjct: 15 LLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVICEYYYLFFAIVKVPTDWASRRGASIERWDCLQSTKGGKRADSSGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVNLYIKSTRDCTAAQGPSCSLAAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVIGEGPYCWKEPGSREVEPCSVCCTEPE 235
BLAST of mRNA_S-dermatodea_contig8103.16298.1 vs. uniprot
Match: A0A7S2CU36_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU36_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.560e-31 Identity = 84/237 (35.44%), Postives = 109/237 (45.99%), Query Frame = 1
Query: 46 GPSLRWRPVFISGLLGSIVACEYYYLFFAVMK-VPKDWATNRGVSMQRWDCLQSTKGGKSG-----EGSTSSFDINPCFCLSDGYCK-----NDVTGLWMDPLFCPRDGSGSC-----WGADRVEIPLY-----------------IESG--RDCAAGQGTSCTLKEPCTPCDAAAVEAYITAGVSGASRCRRCGVGNRGDCNFVIDEGPYCWKEL------GSTEIEPCSVCCTEP 633
G +WR F LL +V +YY +F M+ P D GV RWDCLQSTKGGK EGS + +NPC+C ++ CK + G PL CP +C + A + E ++ G RDC GQ CT ++PC+PC+ V A+ G +RC C V N GDCNFV GPYCW+ GS ++ PC CCTEP
Sbjct: 147 GVGSKWRSNFSGSLLLGMVVIQYYSVFMTAMQNYPYD-----GVEAYRWDCLQSTKGGKISRAMFYEGSERA--LNPCYCHANATCKYKSGVKEYNG--SHPLGCPLTDEFTCLEQYAFQAFKTETXXXXXXXXXXKVWPYIAREALDEGFRRDCKKGQAARCTRQDPCSPCELEKVLAF------GVTRCETCSVFNNGDCNFVPGVGPYCWESPDYDERGGSRKVVPCKQCCTEP 368
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 306.6 |
| Seed ortholog evalue | 9e-81 |
| Seed eggNOG ortholog | 2880.D7FJN7 |
| EggNOG OGs | 2CAJ7@1,2STMA@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_000510.1 |
| Exons | 6 |
| Model size | 636 |
| Cds size | 636 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8103.16298.1 >prot_S-dermatodea_contig8103.16298.1 ID=prot_S-dermatodea_contig8103.16298.1|Name=mRNA_S-dermatodea_contig8103.16298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=212bp
LVTLVTLALCANVLVGPSLRWRPVFISGLLGSIVACEYYYLFFAVMKVPK
DWATNRGVSMQRWDCLQSTKGGKSGEGSTSSFDINPCFCLSDGYCKNDVT
GLWMDPLFCPRDGSGSCWGADRVEIPLYIESGRDCAAGQGTSCTLKEPCT
PCDAAAVEAYITAGVSGASRCRRCGVGNRGDCNFVIDEGPYCWKELGSTE
IEPCSVCCTEPQ back to topmRNA from alignment at S-dermatodea_contig8103:2010..7591- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8103.16298.1 ID=mRNA_S-dermatodea_contig8103.16298.1|Name=mRNA_S-dermatodea_contig8103.16298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5582bp|location=Sequence derived from alignment at S-dermatodea_contig8103:2010..7591- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGTCACCCTGGTGACCTTAGCATTATGCGCGAACGTTCTCGTTGGTCC
ATCTCTACGCTGGCGACCTGTATTTATTTCCGGACTTCTCGGGTCAATTG
TGGCCTGCGAGGTGAGCAACACTATGATGGGCTAAACCACCGAACACAGT
TACTATCGTAGAGGAACGGCTGCCGGGTATCACAACCGATATAAGAGAAT
AAATAAAGCTTCTTGGCTAGGATTCGAGCAACGACTCCGCGAGCATTGAG
AATGGCTGGTGAGGGTGAGCCTGCGTTGGCTGGAAAGGCGTACAGCGTGG
CCGGAGTTACGGAGTGTCCCAGGGCTTCGAGTCTGATTCCCGGGCTTAGT
GGAGGAGAATATATTGCTTCGATGGCACGTAGCAGATCGCTTGCCTCTAT
ATGGTGTCCGGCGTGCGCGCGGGATGGCCCGCGTTGCCGCCCTTTGCTGG
TGTTTGGCCATGCACAGAAATGCTGCAGTCAATTTACATGCTGTACATGG
GGTGGTCACGTCAACTGCTGTAGATCCGCTCGGATCGTGTTATTGTTCGC
TTCGGCTTCGAGATGAATTATTTCGCTCATTGGTTGACAGCGAACACAGG
CATAGGGCTGGTACCTATCGAACGCGTCGTTAGCGAAGGGCGATCTCACC
TGTGTGCACCTGTGTGCCGAACCTTAAATCTCAGAGCTCATGCCCTTGTA
TGTGTTGGAGGGGAATTCCGCTGTGATTTCTTGCCATATGACTTAACAGA
GATATGTCCTACGCTCTCTTGTAGTGTAGATCGCGAAAGGGTGTTTGTTT
TTAGTTTCACTGTCCCAAGTATGGCCTACGCCACAGCGACGTTGTGTTCT
TGGGTCATTGCGTCTACGGTCCATTTACCGCCCTATCTTTGAGGTCAATT
TAGTTCGTTTGTTTTTCCGTTTTCCCCGCAAATTCTTTCGCTCGCCGTCC
CGATCTGCAGTACTACTACCTATTCTTCGCGGTGATGAAAGTCCCCAAGG
ACTGGGCTACAAATAGGGTGAGATATCGCGCCCTCCATCGACCGTTGTTG
CTCGGAGCATTGCCTCGATCACCCGTGGCCCTCTCGTTTGCAGAAAACTC
CAACGGTTTCAGTTGCGGTGACTTTGTTCATCCACCGGCATGGAGGACCG
GGCTTCAGTGTTAGCGGAGCCCTCTTTTCTCACCGGCTCATGCACACGGT
TTTCGCCGTCCGTCCCAGGGTGTTTCTATGCAGAGGTGGGACTGTCTGCA
GAGCACCAAGGGGGGCAAAAGCGGGGAGGGTTCCACCAGCTCGTTTGACA
TCAACCCTTGCTTCTGCCTGAGCGATGGATATTGCAAGAACGACGTGACA
GGTATGGTGAGAGCTGGTCAGGTTCAGAATGCTACGCGTAGATGCGGTAA
CATCATAATTTCCCCTTGAACGAACGGGTCCAATCTCTCCCGCGCTAACA
ACACGGCGACTTGATGCTCAACGCTTCCGCGGTTATGGCAATCACGAAAA
TCTTGGCAACGGCTTGCAACCACGAACATAGCATTTACTTTCTAACGTAG
CCAAGATGGTATTACGGAGGCACACAGTACATAATCAGGACCGCCTTTCT
CCTCGATAGCGTATTCAGGGGGATGGTTTTTTATACGTTGGCCCTAGCAC
CTCGTAAAGCATTTGTTTTAGTTTTTTTTCCGACGTTTCAGGCCGGAAGA
TTGCAGATGCTGTATAGTATTAATAGTGTACAATAAGGTCAGACCACATT
GATTTCTGGTTTACTCTGTTGGGTATACGTTTTGGCACATTTGATCCGGA
TTACTATTATGCTGTACTACTGCTGTGTACCTCCGTAAAAATGTACCTTT
GCTCCACACCGCCCGCCCCCCCGTCACTCCGGTGTACCTTGGTTGTTCGC
AGGCCTATGGATGGACCCTTTGTTCTGCCCTCGGGACGGATCGGGGTCTT
GCTGGGGAGCTGACCGTGTGGAGGTTAGATCGGCATATCGCTGTACATGC
CCCTCGGCATTGTCAGACACAGAGACGATTGTACTGCGCAGCCATCCCTC
ACATGGTGTGGGAACTCTCTTAACCCGTATGTACAGACGGCATTCAAACT
ATGGAATCGATACCGGTCCAACCTACCTGAACCTCCGACATCGATCGCCT
ACCAGCGTCGCGCGATAGGCAATGCACGACTCCGTCCTATACCCCCCCCC
CCACCCCCCCCCCCCCTGCGATGCGTTTCATTTCGTGTTGTTTGCATCGG
GCAGGAGGNNNNNNNNNNCCCCCCTCCCTGAACCCCCGCCACCCACCCCC
CCCCACCGTCGCCCCGTAGCCCATGCACCCCCCCCCCCTACCCCCCCCCC
CCCCCCCCCCGGTTTTGTTTTTGTTTTTATCGGGTCAGTGAGCAGAGTAG
GAAGGAAATACTGGCCATCGGCGATCGACCTTGTGGGAACAATGCTCCGT
CCTCTCGAGGACTCGTGGTCAATGGTCTATCAGCTAAGGCATGCAAAACA
TGAGTTCGCCCCCCTCCCCCCTCCCCCGTTTCTGTTCTTGTTTTTTTCGG
GGTCAATGAGCATTGACGGCGATTGTACCCCACCTTTGCTTCGTCGCTGC
GGTGCTCGACACCCAAGCAGATTCCCCTGTACATCGAGAGCGGAAGGGAT
TGTGCCGCGGGTCAGGGCACCAGCTGTACTCTTAAGGAGCCGTGCACTCC
GTGTGATGCGGCAGCTGTTGAGGTACGCCCCCCACTCAAGGAGAAGCTCT
GCCCCAACATTTTGAAAATTGGACTTGCTTGCGGCAGACAGCAGTCTCAA
CGTTTTTACCTTTTGAGGTGGGGCTCTTCAAACCTATTAGCCTAACCCAG
TTCTCGTCTGTGACAACAAGGGACGTGACTTGGATTTAAATGCGTGTGCG
TCAATTATTCCCGAAACCCGCCGACGTGTCATATGTTATTTTTTCACGGT
CTCCCGCTATCCGCGGCAGAAGTGGAGGAGGTACAATCCACTCCGTCCGG
ATTCGAACTATGGTTTTTCTGTTTTTTTTTAATGTTTTAGTGTCACCGGT
TCAGCAGAAAGGCCATGAGTAGACTTCAACGTGTCCGAGCGGGACTAGAA
GGGCCAATAGGAACAGCCACATTGACTTGCACCACCGAAAATGTTAAATT
CTAACCTTAAAAAACTGATCTAAAAAAGCCAGCGGCTGACTAGCTCAGAC
GGCAAGATGACAAGCTCTGTGGTTCAGCTTAACACTCGACAACATATAGT
ATCGTGTTCTTTTTGCACCTTGTTATTGCTGACCACGGAGATTGTCAGCG
CTGAGTAGCTCAGCTGTTCAGATTACACCTACCATAAATCACGACCTCCC
GAAAGTCAGACGCGCACAAGTTGAAAGCCGTGCGTGTACGGTGATAATTT
CTACAATTAACTTTAGCTTCCGTAAGCTCCGTCAAGACGACCCCCTCTCC
AAACACCAACACGGCATCCAGGGTACGCATTAAATGAAGCGATGTTTCCT
TGGCGTGAGCAATCTGCCACCCAATGTCGCCATGCTCCTCTGCATCGGGT
CACTTCGCGATAGGAACACGATCGCAGTCCTGCATTAACAACGTGTGGTA
TTTTTACTGCAGATCTTCAACCATAACCGCTACCTGGCCACGGCGATCCC
TTCTCGAGGCTGACTTGCACTTCCAGAGTTGATACGGCAATCGATTGCAA
GAAGTCAGATCACGATGATATTGGAAAATGCCACGTATGGATTGCTCTAC
CGCCCGAACTGCTTTAGCAGGGCCCAAAATCCAAAATCACCCGCGTCGGA
CACCCCAGCGCACTATTGCACGTTTCGATTACTGCAATATTTTTTGCGCC
TTTATTTTGCCTTGCTTTTCAGTTTGATACACCTGCGGGTCGGTGGGAAC
ACGTACCTTTCGTGAAGGGTTGCGAAGACACATTTGTGATTTGTTTTTCT
CGGGAAGACGGTCTGAGTGTGAGTATGAGCTCGATCAGTGTTTTGTTGCG
TTAAATTTAGTCCCCTCCTCCGATAGTCCCGGCTTTGTAGGGATGCGAGG
TCTATGGTCTAACGACTACGGCATGCACGATCAATGAGTACACCCCCCTC
CTCCGATCCGACCAGGCCTTTGATAAATTCTTGCTCGTTCGCTGTATCAC
CACAGAGTGCCCATTCTGTATCTAGATGCAGAAATGTGAAGTTTCGATTA
ACTGCAAGGATGACGTGTACCTGCGATAGGCGATAGGCGATAGGCTATTG
CGGAGGTACACAGAGTAATCAGGACATACATTTTGTTTAGTGGCATTTCC
GATTTCCGAGGGTTGCTTTAAAACTTTGGCCCGAAAAACTTTTCAGTAAA
TTTGTACCATAGTTTTTTACTGACTTTCCAGGCCGGAAGACTGGACATGA
CGGTGTAAGGCCATACTATTAATGTATTCCTTTCTGGGTTGTTCTGTTAG
GTATAATACCTGGGACAGTTTAAATTTTGGTACTGAGAACTACTGTGTGT
ACCTCCGTAATTAGGAAGACGATGTTTGTACTCGTACATATGTCGTTTTT
TCTTTTTTCGGGGCACAGCCCCTTGGTTGGACTGGTTGACCAACAGCCCA
GTAGGCGGAGGACCCAGGTTCAAATCTAGGCAGAGTCGATCTGTGTTTAT
TTTATCTACCTCCGCCGCGGAAAGCGCGAGGGCGTGAGTAAGAAAAAAAA
ACGAGAAATCCGCGAGCTGTGAGAGTGCCGAACCCAATGCGCGATAAAAT
CAAAGGTGAGAACCGGGGAGAGATGGGATGATCCCTTGTGACCACATACG
GACCTCGGAAAAGCAAGTCTATCTTATGTATATGTGTGCCAACAACAACA
GTAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCGAA
GTCTGGAAGCTGGAACTCGCAAACCTCCCCATAAAGCCTAGATCACCTGT
GCCGGACACGGTCTTGACGAAAACTACACCATCCACGTGCCTACTCTCCA
GATATCAAAGCCATGGGTATTTTAGCGTATGTCGGCTCTGGCTGGTTGAC
CGCAGGGCCGCAGGGTACAGCAGGATGCCTTGGCATATTATACGAACTGA
AACAATATATAATCGACGATTGCTTTTTCGTTCATTTTCCTAAAGGTACG
TACCCTAATCCGGGATTAGTACATGTACGCGTTTACTCGAGGCGATACAC
CTTGCGAACGCGCTAGGCAGGGGAACACGTAGTGCCTGGGAACAGGACAG
TTGACACGGGATAAACCCGTCCAACGCACCTGAGCGACGTGCTCTCGCCA
GTCGCTAAGGATCGACGACGTCGAGGTTTTCCACGTTAAAAACACTATGG
TTAGCAGTCCACGAGCGATTACGCCCGCACCTAACCGATACTGGGCGCTT
GGTTTTGTCAACACCATCAGGCGTATATTACCGCCGGGGTGAGCGGGGCG
TCAAGGTGTCGGCGCTGCGGGGTCGGCAACAGGGGCGACTGCAACTTCGT
TATCGACGAGGGGCCCTATTGCTGGAAGGAGCTGGGGTCCACGGAGATCG
AGCCTTGCTCCGTTTGCTGCACTGAACCCCAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8103:2010..7591- >mRNA_S-dermatodea_contig8103.16298.1 ID=mRNA_S-dermatodea_contig8103.16298.1|Name=mRNA_S-dermatodea_contig8103.16298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at S-dermatodea_contig8103:2010..7591- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGTCACCCTGGTGACCTTAGCATTATGCGCGAACGTTCTCGTTGGTCC
ATCTCTACGCTGGCGACCTGTATTTATTTCCGGACTTCTCGGGTCAATTG
TGGCCTGCGAGCTGGTCACCCTGGTGACCTTAGCATTATGCGCGAACGTT
CTCGTTGGTCCATCTCTACGCTGGCGACCTGTATTTATTTCCGGACTTCT
CGGGTCAATTGTGGCCTGCGAGTACTACTACCTATTCTTCGCGGTGATGA
AAGTCCCCAAGGACTGGGCTACAAATAGGTACTACTACCTATTCTTCGCG
GTGATGAAAGTCCCCAAGGACTGGGCTACAAATAGGGGTGTTTCTATGCA
GAGGTGGGACTGTCTGCAGAGCACCAAGGGGGGCAAAAGCGGGGAGGGTT
CCACCAGCTCGTTTGACATCAACCCTTGCTTCTGCCTGAGCGATGGATAT
TGCAAGAACGACGTGACAGGGTGTTTCTATGCAGAGGTGGGACTGTCTGC
AGAGCACCAAGGGGGGCAAAAGCGGGGAGGGTTCCACCAGCTCGTTTGAC
ATCAACCCTTGCTTCTGCCTGAGCGATGGATATTGCAAGAACGACGTGAC
AGGCCTATGGATGGACCCTTTGTTCTGCCCTCGGGACGGATCGGGGTCTT
GCTGGGGAGCTGACCGTGTGGAGGCCTATGGATGGACCCTTTGTTCTGCC
CTCGGGACGGATCGGGGTCTTGCTGGGGAGCTGACCGTGTGGAGATTCCC
CTGTACATCGAGAGCGGAAGGGATTGTGCCGCGGGTCAGGGCACCAGCTG
TACTCTTAAGGAGCCGTGCACTCCGTGTGATGCGGCAGCTGTTGAGATTC
CCCTGTACATCGAGAGCGGAAGGGATTGTGCCGCGGGTCAGGGCACCAGC
TGTACTCTTAAGGAGCCGTGCACTCCGTGTGATGCGGCAGCTGTTGAGGC
GTATATTACCGCCGGGGTGAGCGGGGCGTCAAGGTGTCGGCGCTGCGGGG
TCGGCAACAGGGGCGACTGCAACTTCGTTATCGACGAGGGGCCCTATTGC
TGGAAGGAGCTGGGGTCCACGGAGATCGAGCCTTGCTCCGTTTGCTGCAC
TGAACCCCAGGCGTATATTACCGCCGGGGTGAGCGGGGCGTCAAGGTGTC
GGCGCTGCGGGGTCGGCAACAGGGGCGACTGCAACTTCGTTATCGACGAG
GGGCCCTATTGCTGGAAGGAGCTGGGGTCCACGGAGATCGAGCCTTGCTC
CGTTTGCTGCACTGAACCCCAG back to top
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