mRNA_S-dermatodea_contig810.16294.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig810.16294.1
Unique NamemRNA_S-dermatodea_contig810.16294.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig810.16294.1 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 9.380e-61
Identity = 103/140 (73.57%), Postives = 112/140 (80.00%), Query Frame = 1 
Query:    1 MPLDEKGRRLHGRLEFFDRNVTQLTKHVAQIVEHHQGKALLSTVFPLHVADGVTRGIKFSANIKNIAAQEPFADLQDRLVGLAEITERVALERKSIMYDRAKSQVLNKLAQIKKSVITPTQALLEDRDSCVKALLKAEEK 420
            M LDEKGRRLHGRLEFFDRNV QL +H++Q V HHQ              DGV  GI FS  IK IAAQEPFADLQDRLVGLAEITER++LERK+IM DRAKSQVLNKLA IKK+VI PTQALL+DRDSCVKAL+KAEEK
Sbjct:    1 MTLDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQ--------------DGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEK 126
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BLAST of mRNA_S-dermatodea_contig810.16294.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 8.400e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1 
Query:    1 MPLDEKGRRLHGRLEFFDRNVTQLTKHVAQIVEHHQGKALLSTVFPLHVADGVTRGIKFSANIKNIAAQEPFADLQDRLVGLAEITERVALERKSIMYDRAKSQVLNKLAQIKKSVITPTQALLEDRDSCVKALLKAE 414
            M LD+KGR + GR+EFF+RN+ +L+KH+  +V  H+               GV  G+KFS  +K++AAQEPFADLQDRLV L+E+TER+ALERK  + DRA+ QVL KL +++  VI PT+ALL+DRD C+++L+KAE
Sbjct:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKA--------------GVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAE 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig810.16294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS5_ECTSI9.380e-6173.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA8.400e-4052.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig810contigS-dermatodea_contig810:21134..23395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog42099.EPrPV00000015513
EggNOG free text desc.function. Source PGD
EggNOG OGs1MG9E@121069,2A8KZ@1,2RYGR@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_001960.1
Exons4
Model size420
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig810.16294.1prot_S-dermatodea_contig810.16294.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig810 21134..23395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925320.685336-CDS-S-dermatodea_contig810:21133..211901622925320.685336-CDS-S-dermatodea_contig810:21133..21190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 21134..21190 -
1694079853.26159-CDS-S-dermatodea_contig810:21133..211901694079853.26159-CDS-S-dermatodea_contig810:21133..21190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 21134..21190 -
1622925320.6998448-CDS-S-dermatodea_contig810:21630..217021622925320.6998448-CDS-S-dermatodea_contig810:21630..21702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 21631..21702 -
1694079853.2750216-CDS-S-dermatodea_contig810:21630..217021694079853.2750216-CDS-S-dermatodea_contig810:21630..21702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 21631..21702 -
1622925320.713242-CDS-S-dermatodea_contig810:22382..225601622925320.713242-CDS-S-dermatodea_contig810:22382..22560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 22383..22560 -
1694079853.2845182-CDS-S-dermatodea_contig810:22382..225601694079853.2845182-CDS-S-dermatodea_contig810:22382..22560Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 22383..22560 -
1622925320.7234197-CDS-S-dermatodea_contig810:23282..233951622925320.7234197-CDS-S-dermatodea_contig810:23282..23395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 23283..23395 -
1694079853.2946694-CDS-S-dermatodea_contig810:23282..233951694079853.2946694-CDS-S-dermatodea_contig810:23282..23395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig810 23283..23395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig810.16294.1

>prot_S-dermatodea_contig810.16294.1 ID=prot_S-dermatodea_contig810.16294.1|Name=mRNA_S-dermatodea_contig810.16294.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
MPLDEKGRRLHGRLEFFDRNVTQLTKHVAQIVEHHQGKALLSTVFPLHVA
DGVTRGIKFSANIKNIAAQEPFADLQDRLVGLAEITERVALERKSIMYDR
AKSQVLNKLAQIKKSVITPTQALLEDRDSCVKALLKAEEK
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mRNA from alignment at S-dermatodea_contig810:21134..23395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig810.16294.1 ID=mRNA_S-dermatodea_contig810.16294.1|Name=mRNA_S-dermatodea_contig810.16294.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2262bp|location=Sequence derived from alignment at S-dermatodea_contig810:21134..23395- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTCTTGATGAGAAAGGCCGAAGGCTTCACGGGCGACTGGAGTTCTT
CGATCGAAACGTTACGCAGCTTACGAAACACGTCGCGCAGATTGTCGAAC
ATCACCAAGGCAAGTATGATGCGGAAGATGTATGCGCGAAAAAGATATGA
CACGGGCTTATAGCGTTGCAGACGTGTGCACATACACGGCGAGCGCCGCA
GCCTGAACGCCGCGAGTGTGCATGCCGCTGCACTTGAACTGCTGTGTATC
ACGAGTAATTGGATGATACAGAGGTCAGCCACTACAGGAGTTGTGTTGAC
AAGTTCTTTCAAATGGTTAAATCCAAGGTGTCAGGTGGTGACTGCCGTCC
TCCGCATAGTATTAGTATTACATGGCTCAATTTCTGGATCTTTCACCCAA
ACGCATCGCCAAGCGTACTCTGTACGTATTATAATACTGTGTTTGTATAT
ATAATCTTAACCTTGCAACCGCCGGCTGCCGAGGATCTTTTTGCGAGTGC
ATCATTCTTTCAGCGCGGAGCGGACGTAACAGCTATGCCCATGTTACTCT
GTCTCTAAGTAGACTATCATATAGGCAAGTATTTCACGTTAGTATAATAT
TTTACGTAACAGTTCGGGACCCTGGGGAAACACGTCAAGCACAAGGTTCT
TGGTGTGGACCCATCTCGCGTAGCGCAGTTTTGATTGAGTTCGTTGGCAC
GAGCTTGATCTAAAAAGCGCAATATGAGAACATACATGTATGACGATGTC
CATGGCTTTGGGGACGGCGTCCCAAGACGTGAGCTTTGCGTAAATCCCGA
GGCGACAAGACGTGCACCGACCGTCAGGAAGCTAGAGCTCTCCTTTCCAC
CGTGTTTCCTCTGCACGTCGCAGATGGTGTCACACGGGGCATCAAATTCA
GCGCAAATATAAAGAACATCGCGGCGCAGGAACCGTTCGCAGATCTTCAG
GACAGGCTCGTGGGACTCGCGGAAATCACCGAGAGGGTTGCTCTCGAGAG
AAAGAGCATCATGGTGAGCAATGCCTGACGTACACGGGGTGTGATGTACG
CACTATACATACTTGTATGCAACTCATGGGTTAGGGCGCACACGGGGTAG
GCCGTACATGTACCTGGCTGGCATCGACGTGACAAACCAGCGCGAGTAAC
TCCGGGTGTGCCAAAGTATGGTAACAATGCGACTCGGCGCGCTGTTTTCG
GGTTTACACCCCGGCATGGCGAAAAGCTTGGTTGCGAAGGCAGGTATGTT
TAACTTGATTTATCGTGTTGTCATCCCAACTTCTCGTTTGCTTTGGCACA
AGCTGCTGCGATATACCCCAGTAGTGAGCTCTCACGTACACGGTGCACTG
CCGAAAAGTAGCCCCAGAGGAACATATCGACGGGTCCGACGCATCAACAC
GCGTAGCCTCTTGTGATGGTTTACTTTTGTCTGTGTACGAAGTCGAGGGT
TGTAATCGCCTTGTGGTCTCCAAAGTTGCCATTATACTTGCGAGGGGTCC
TACGAGAGTGAACATGATGTGAGACGCACGAACATCATTCGACATAATGA
CGAGAATGCGCAACAATTCTGCACAAATTCAAGAACAAGCAATACGCATA
GAGCATGACATTCGAACATACTATCCAACACCATTGCACCATGTGTGTAA
ACTCAAATGCTCTACGCCCGGCCTCTTGTCTTCACAATCCCAGTATGACC
GAGCAAAGAGCCAAGTGCTGAACAAGCTGGCGCAGATTAAGAAATCTGTC
ATCACTCCCACACAGGTGAAAAATGTACTCAAAGAACGCACGAAAACCCC
GATGGCACAAGCGAGCGGTAGCGACGCTGCTTTGGTTTTGGGCGGGGCCG
GAGATTTGGATTTCTCGATTGCCCAGACATACGTGTCGTACAGGAGTGCA
TCGGTCGATCTCAACACCCAGCGAGGACCATGTCTTTGTCGAGCATCGGC
AGAGCAGCAAGTGTCGTACCTTGGCGCTGGTAGCCATGCATTCACTACAA
CTATTGCCTCTCACATATCGTGCCCGCCGTAAAGGAAATATGCTGTGGTA
CTGAGCGATGTCTCCAAGATATCACACTGTGGTGCTGTGCAACTTGCATT
GCTTGTACTTCAAATCGGCTGCTTGTAGCGTGAAATCACTTACCAGGTAC
CTCTACCCTCCTGCGACACTACGCCTATGTTCCGTTCAACCGGTATCATC
TGTAGGCCTTGTTGGAAGACAGGGACAGTTGCGTCAAAGCTTTGCTCAAG
GCTGAGGAAAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig810:21134..23395-

>mRNA_S-dermatodea_contig810.16294.1 ID=mRNA_S-dermatodea_contig810.16294.1|Name=mRNA_S-dermatodea_contig810.16294.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig810:21134..23395- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTCTTGATGAGAAAGGCCGAAGGCTTCACGGGCGACTGGAGTTCTT
CGATCGAAACGTTACGCAGCTTACGAAACACGTCGCGCAGATTGTCGAAC
ATCACCAAGGCAAATGCCTCTTGATGAGAAAGGCCGAAGGCTTCACGGGC
GACTGGAGTTCTTCGATCGAAACGTTACGCAGCTTACGAAACACGTCGCG
CAGATTGTCGAACATCACCAAGGCAAAGCTCTCCTTTCCACCGTGTTTCC
TCTGCACGTCGCAGATGGTGTCACACGGGGCATCAAATTCAGCGCAAATA
TAAAGAACATCGCGGCGCAGGAACCGTTCGCAGATCTTCAGGACAGGCTC
GTGGGACTCGCGGAAATCACCGAGAGGGTTGCTCTCGAGAGAAAGAGCAT
CATGAGCTCTCCTTTCCACCGTGTTTCCTCTGCACGTCGCAGATGGTGTC
ACACGGGGCATCAAATTCAGCGCAAATATAAAGAACATCGCGGCGCAGGA
ACCGTTCGCAGATCTTCAGGACAGGCTCGTGGGACTCGCGGAAATCACCG
AGAGGGTTGCTCTCGAGAGAAAGAGCATCATGTATGACCGAGCAAAGAGC
CAAGTGCTGAACAAGCTGGCGCAGATTAAGAAATCTGTCATCACTCCCAC
ACAGTATGACCGAGCAAAGAGCCAAGTGCTGAACAAGCTGGCGCAGATTA
AGAAATCTGTCATCACTCCCACACAGGCCTTGTTGGAAGACAGGGACAGT
TGCGTCAAAGCTTTGCTCAAGGCTGAGGAAAAGGCCTTGTTGGAAGACAG
GGACAGTTGCGTCAAAGCTTTGCTCAAGGCTGAGGAAAAG
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