mRNA_S-dermatodea_contig80939.16285.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80939.16285.1
Unique NamemRNA_S-dermatodea_contig80939.16285.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80939.16285.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.320e-32
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 QDVRMLINTLHCCFVRVHRGSGSFPPQDLEGEPWYVVKDRLLRVKETKPDDPEAELMVSFLLASKTLVTANAATDVELELRL 246
            Q+V+ LI+TLHCCFVRV+RGSG FP +D EGEPWYV+++RLLRVKET PDDPEAELMVSFLL SKTL+ ANA   +ELELRL
Sbjct:  818 QNVKTLISTLHCCFVRVNRGSGPFPLEDKEGEPWYVLRERLLRVKETVPDDPEAELMVSFLLGSKTLIPANA-NQIELELRL 898
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BLAST of mRNA_S-dermatodea_contig80939.16285.1 vs. uniprot
Match: A0A6H5JFV6_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV6_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 9.940e-5
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   25 TLHCCFVRVHRGSGSFPPQDLEGEPWYVVKDRLLRVKETKPDDPEAELMVSFLLASKTLVTANAATDVELELR 243
            ++H  FVRV RG      +DL+G  W  +   L+ V++T+  DPEAELMVS ++ S  L+ A  A   EL+LR
Sbjct:  562 SVHTVFVRVRRGGKCRGQEDLDG--WSSLNSHLM-VRDTREQDPEAELMVSAMVPSFALMMAPPAFT-ELQLR 630
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80939.16285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE1.320e-3275.61DUF4470 domain-containing protein (Fragment) n=2 T... [more]
A0A6H5JFV6_9PHAE9.940e-542.47MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80939contigS-dermatodea_contig80939:518..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.6945963-CDS-S-dermatodea_contig80939:517..7511622925319.6945963-CDS-S-dermatodea_contig80939:517..751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80939 518..751 -
1694079852.5162578-CDS-S-dermatodea_contig80939:517..7511694079852.5162578-CDS-S-dermatodea_contig80939:517..751Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80939 518..751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.7083888-UTR-S-dermatodea_contig80939:751..7631622925319.7083888-UTR-S-dermatodea_contig80939:751..763Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80939 752..763 -
1694079852.534416-UTR-S-dermatodea_contig80939:751..7631694079852.534416-UTR-S-dermatodea_contig80939:751..763Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80939 752..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80939.16285.1prot_S-dermatodea_contig80939.16285.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80939 518..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80939.16285.1

>prot_S-dermatodea_contig80939.16285.1 ID=prot_S-dermatodea_contig80939.16285.1|Name=mRNA_S-dermatodea_contig80939.16285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
MLINTLHCCFVRVHRGSGSFPPQDLEGEPWYVVKDRLLRVKETKPDDPEA
ELMVSFLLASKTLVTANAATDVELELRL
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mRNA from alignment at S-dermatodea_contig80939:518..763-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80939.16285.1 ID=mRNA_S-dermatodea_contig80939.16285.1|Name=mRNA_S-dermatodea_contig80939.16285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig80939:518..763- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACGTCCGGATGCTGATAAACACCCTTCACTGTTGCTTCGTTCGAGT
CCATCGGGGCAGCGGCTCTTTCCCGCCGCAAGACTTGGAGGGAGAGCCTT
GGTACGTCGTGAAGGACCGCCTTCTTAGGGTCAAGGAGACCAAGCCCGAC
GACCCGGAGGCGGAGCTGATGGTGTCGTTCCTGCTGGCCTCCAAAACGCT
CGTCACGGCCAACGCCGCGACCGACGTCGAGCTCGAGCTGCGTTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80939:518..763-

>mRNA_S-dermatodea_contig80939.16285.1 ID=mRNA_S-dermatodea_contig80939.16285.1|Name=mRNA_S-dermatodea_contig80939.16285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig80939:518..763- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGATAAACACCCTTCACTGTTGCTTCGTTCGAGTCCATCGGGGCAG
CGGCTCTTTCCCGCCGCAAGACTTGGAGGGAGAGCCTTGGTACGTCGTGA
AGGACCGCCTTCTTAGGGTCAAGGAGACCAAGCCCGACGACCCGGAGGCG
GAGCTGATGGTGTCGTTCCTGCTGGCCTCCAAAACGCTCGTCACGGCCAA
CGCCGCGACCGACGTCGAGCTCGAGCTGCGTTTGATGCTGATAAACACCC
TTCACTGTTGCTTCGTTCGAGTCCATCGGGGCAGCGGCTCTTTCCCGCCG
CAAGACTTGGAGGGAGAGCCTTGGTACGTCGTGAAGGACCGCCTTCTTAG
GGTCAAGGAGACCAAGCCCGACGACCCGGAGGCGGAGCTGATGGTGTCGT
TCCTGCTGGCCTCCAAAACGCTCGTCACGGCCAACGCCGCGACCGACGTC
GAGCTCGAGCTGCGTTTG
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