mRNA_S-dermatodea_contig809.16281.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig809.16281.1
Unique NamemRNA_S-dermatodea_contig809.16281.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: D8LMQ7_ECTSI (PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 3.620e-96
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 1
Query:    4 YDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREGFELNLAELRERCDARLTALEDDLELRRK 552
            YDNMDLEMLQEVVPML QQLEKSMLDRNYVQLERDTIQTFYDIT +EV+T+ELKT+AKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLK+I MDGE LL  E  LHG RSS L RAKKDIKSEV+E+YLLNAEEIAQVKKAHGKTLTKMREGFE++L+ELR RCDARL +LEDDLELRRK
Sbjct:   28 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDITHQEVKTMELKTSAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKSITMDGEQLLGGEGDLHGNRSSELHRAKKDIKSEVEERYLLNAEEIAQVKKAHGKTLTKMREGFEVSLSELRARCDARLASLEDDLELRRK 210          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: F0XWV6_AURAN (GAS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWV6_AURAN)

HSP 1 Score: 221 bits (562), Expect = 7.590e-67
Identity = 124/184 (67.39%), Postives = 142/184 (77.17%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREGFELNLAELRERCDARLTALEDDLELRRK 552
            EYD+MDLEMLQEVVPML QQL K  LDRNYVQLERDTIQ FYDIT+ EV+ +E + AAKDREMELMEDNHRVEVRVY+QKVKHLEYEH NNL+ IA++GEH + +E   H  R+  LK+ KK +K E+ E+   NAEEI QVK+ H K L KMREGFE  L EL +RC  RL  L  DLELRRK
Sbjct:   26 EYDSMDLEMLQEVVPMLKQQLAKCTLDRNYVQLERDTIQMFYDITKGEVQDIERQIAAKDREMELMEDNHRVEVRVYLQKVKHLEYEHNNNLRNIAVEGEHFMTEEHENHDNRAYELKKTKKSLKLELAEREWSNAEEIKQVKQQHAKNLLKMREGFEGQLGELSDRCGKRLEQLAADLELRRK 209          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A835YLL1_9STRA (Growth-arrest-specific micro-tubule binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL1_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.190e-65
Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREGFELNL 483
            EYDNMDLEML EVVPML QQLEKSMLDRNYVQLERDTIQTFYDI+RRE   L +  AAKDREMELMEDNHRVEVRVY+QKVKHLEYEH+NNL+A+  +G  LL DE+  HG+R + LK AK D+K  + E+ LLNAEEI+QVK AH K LTKMREGF+ +L
Sbjct:   26 EYDNMDLEMLHEVVPMLKQQLEKSMLDRNYVQLERDTIQTFYDISRREARDLGMNIAAKDREMELMEDNHRVEVRVYMQKVKHLEYEHRNNLRAVEAEGASLLGDESAQHGERDADLKCAKHDLKRSLAERELLNAEEISQVKAAHLKNLTKMREGFDGSL 186          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A6V1SRB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SRB9_HETAK)

HSP 1 Score: 180 bits (457), Expect = 2.570e-51
Identity = 99/157 (63.06%), Postives = 123/157 (78.34%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREGF 471
            EY+NM+L+ML+EVVPML QQLEK+MLDRNYVQLERDT QTFYD+T++EV  L+L+ AAK+REMELMEDNHRVE+RVYVQKVKHLEYEH+NNLK I  +G  LL +E   H      +KR KK++K E+ E+ L NA  +   ++ + K L KMREGF
Sbjct:   28 EYNNMELDMLKEVVPMLRQQLEKAMLDRNYVQLERDTTQTFYDLTKKEVYDLDLQIAAKEREMELMEDNHRVEIRVYVQKVKHLEYEHKNNLKHINQEGGGLLSEEQEQHDTNELEIKREKKEMKLELVEQDLQNAAAVLLERETNEKNLRKMREGF 184          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A7S3HKZ6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKZ6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.190e-48
Identity = 95/152 (62.50%), Postives = 115/152 (75.66%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTK 456
            EYD MDLEML+EVVPML QQLEKSMLDRNYVQLERD+IQ ++D TRREV   EL   AKDREMEL+EDNHRVE+RVY QKVKHLEYEH+N++K+I +DG  LL  E   H +R   L R K+ +K E  E  L+N  ++A+V++ H K L K
Sbjct:   21 EYDTMDLEMLREVVPMLRQQLEKSMLDRNYVQLERDSIQQYFDTTRREVREYELSITAKDREMELLEDNHRVELRVYQQKVKHLEYEHKNSIKSIVVDGTGLLGVEQTTHEERERELLRVKEQLKYEQMELELVNTNKVAEVRQQHDKQLIK 172          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A5D6XML6_9STRA (GAS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XML6_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.450e-47
Identity = 99/184 (53.80%), Postives = 125/184 (67.93%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREGFELNLAELRERCDARLTALEDDLELRRK 552
            EYD MD+ ML+EV+ ML QQLEK+ +DRNYVQ ERDTI++FY+IT+ E+   E +  AKDREME+MEDNHRVEVRVYVQKVKHLEYEH NN + +  D    +D+E  LH  R S L+  K+ ++ E  E+ L N +E  Q+ +AH K L K+RE F    A L  RC  RL  L + L LR K
Sbjct:   27 EYDTMDVPMLREVIQMLRQQLEKAQVDRNYVQHERDTIESFYEITKAELADHENEIMAKDREMEIMEDNHRVEVRVYVQKVKHLEYEHANNRRRVLGDATGRVDEERDLHEHRESVLRSTKQSLRLERKERELSNEDETEQMTQAHEKNLLKLREQFAATNAALEARCRQRLRELHESLALRCK 210          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A8J2SEB4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEB4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.070e-47
Identity = 94/184 (51.09%), Postives = 129/184 (70.11%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREGFELNLAELRERCDARLTALEDDLELRRK 552
            EY+ MDLEML+EVVP+L Q L K  LDRNYVQLERD +Q FYDI+R EVE ++ + A KDR+MELME+NHRVE+RVY+QKV+HLEYEH++ L+ +  D +H   +E   H QR+  LK+AK  I++E+ E+ + NAEE+ ++++            FE  + EL  +C  RL  LE DL++RRK
Sbjct:   20 EYETMDLEMLREVVPLLKQTLAKKSLDRNYVQLERDALQQFYDISRSEVEDVKGEIAKKDRDMELMEENHRVELRVYLQKVRHLEYEHRHALRGVGEDTKHFDTEEKEAHEQRTHALKKAKTSIRTELGEREISNAEEVRELREQXXXXXXXXXLEFEEEIVELGSKCQKRLEQLETDLKMRRK 203          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A7S2C9W3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9W3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.280e-47
Identity = 98/184 (53.26%), Postives = 127/184 (69.02%), Query Frame = 1
Query:    7 DNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMREG-FELNLAELRERCDARLTALEDDLELRRKA 555
            D MDL+ML+EVVPML QQ+EK+ LDRNY+QLERDTIQ FYDIT+ E+  L+   A KDR ME MEDNHRVEVRVY+QKVKHLEYEH+ NL  I ++G+  ++ EA LH +  + +KR  + ++ E D   +            H K++  MR   FE N  +LR+RC+ RL+ L+ DLELRRKA
Sbjct:   24 DTMDLDMLREVVPMLRQQMEKANLDRNYLQLERDTIQNFYDITKSEILQLDNLIAKKDRAMEEMEDNHRVEVRVYLQKVKHLEYEHKQNLDTICIEGDEFVEQEAILHEENKAEMKRLAQKLREERDSNQMXXXXXXXXXXXKHEKSMLIMRNQIFEKNENDLRDRCENRLSQLKTDLELRRKA 207          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A067CHZ1_SAPPC (GAS domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHZ1_SAPPC)

HSP 1 Score: 167 bits (422), Expect = 3.270e-46
Identity = 89/139 (64.03%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEI 417
            EYD MD+EML+EV  ML QQL+KS +DRNYVQ ERDTIQ+FYDIT+REVET +++  AKDREME+MEDNHRVEVRVY+QKVKHLEYEH+NNLK +  DG   +D+E  +H  R   LK AK+ +K E+ E+ L N +EI
Sbjct:   23 EYDTMDVEMLKEVTQMLRQQLDKSQVDRNYVQHERDTIQSFYDITKREVETHDMEIMAKDREMEMMEDNHRVEVRVYIQKVKHLEYEHKNNLKRVKTDGGSHIDEEKDMHVHREHKLKGAKQALKLELKERELSNEDEI 161          
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Match: A0A024USX7_9STRA (GAS domain-containing protein n=13 Tax=Aphanomyces TaxID=100860 RepID=A0A024USX7_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.530e-45
Identity = 87/135 (64.44%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 EYDNMDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLELKTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLDDEAGLHGQRSSGLKRAKKDIKSEVDEKYLLN 405
            EYD MD+EML+EV  ML QQL+KS +DRNYVQ ERDTIQ+FYDITRREVET +++   KDREME+MEDNHRVEVRVY+QKVKHLEYEH+NNLK +  DG   +D+E  +H  R   LK AK+ +K E+ E+ L N
Sbjct:   24 EYDTMDVEMLKEVTQMLRQQLDKSQIDRNYVQHERDTIQSFYDITRREVETHDMEIMGKDREMEMMEDNHRVEVRVYIQKVKHLEYEHKNNLKRVKADGLSHIDEEGDMHVHREHKLKGAKQSLKLELKERELSN 158          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig809.16281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ7_ECTSI3.620e-9686.89PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECT... [more]
F0XWV6_AURAN7.590e-6767.39GAS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A835YLL1_9STRA2.190e-6573.29Growth-arrest-specific micro-tubule binding-domain... [more]
A0A6V1SRB9_HETAK2.570e-5163.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3HKZ6_9STRA4.190e-4862.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5D6XML6_9STRA2.450e-4753.80GAS domain-containing protein n=1 Tax=Pythium bras... [more]
A0A8J2SEB4_9STRA4.070e-4751.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2C9W3_9STRA9.280e-4753.26Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A067CHZ1_SAPPC3.270e-4664.03GAS domain-containing protein n=3 Tax=Saprolegniac... [more]
A0A024USX7_9STRA3.530e-4564.44GAS domain-containing protein n=13 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig809contigS-dermatodea_contig809:7399..9948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue5.2e-77
Seed eggNOG ortholog2880.D8LMQ7
Preferred nameGAS8
KEGG koko:K14474,ko:K19942
KEGG Pathwayko05143,map05143
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003351,GO:0003355,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005815,GO:0005856,GO:0005874,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0017016,GO:0017137,GO:0019899,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031267,GO:0031514,GO:0032474,GO:0032475,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0033036,GO:0034613,GO:0034622,GO:0035082,GO:0035889,GO:0036064,GO:0036126,GO:0040011,GO:0042127,GO:0042471,GO:0042472,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043583,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045880,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048731,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051020,GO:0051098,GO:0051179,GO:0051641,GO:0051674,GO:0055001,GO:0060271,GO:0060285,GO:0060294,GO:0060322,GO:0060341,GO:0061061,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0090596,GO:0097014,GO:0097223,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903564,GO:1903566,GO:1903827,GO:1903829,GO:1904526
EggNOG free text desc.positive regulation of protein localization to cilium
EggNOG OGs2BXFH@1,2QQDA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size556
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig809.16281.1prot_S-dermatodea_contig809.16281.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig809 7399..9936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.3648787-CDS-S-dermatodea_contig809:7398..75301622925319.3648787-CDS-S-dermatodea_contig809:7398..7530Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 7399..7530 -
1694079852.2851121-CDS-S-dermatodea_contig809:7398..75301694079852.2851121-CDS-S-dermatodea_contig809:7398..7530Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 7399..7530 -
1622925319.376048-CDS-S-dermatodea_contig809:7960..80511622925319.376048-CDS-S-dermatodea_contig809:7960..8051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 7961..8051 -
1694079852.2987332-CDS-S-dermatodea_contig809:7960..80511694079852.2987332-CDS-S-dermatodea_contig809:7960..8051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 7961..8051 -
1622925319.3895075-CDS-S-dermatodea_contig809:8495..86151622925319.3895075-CDS-S-dermatodea_contig809:8495..8615Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 8496..8615 -
1694079852.3160305-CDS-S-dermatodea_contig809:8495..86151694079852.3160305-CDS-S-dermatodea_contig809:8495..8615Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 8496..8615 -
1622925319.4016578-CDS-S-dermatodea_contig809:9166..92731622925319.4016578-CDS-S-dermatodea_contig809:9166..9273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 9167..9273 -
1694079852.33406-CDS-S-dermatodea_contig809:9166..92731694079852.33406-CDS-S-dermatodea_contig809:9166..9273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 9167..9273 -
1622925319.412227-CDS-S-dermatodea_contig809:9843..99361622925319.412227-CDS-S-dermatodea_contig809:9843..9936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 9844..9936 -
1694079852.3522646-CDS-S-dermatodea_contig809:9843..99361694079852.3522646-CDS-S-dermatodea_contig809:9843..9936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig809 9844..9936 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.4246109-UTR-S-dermatodea_contig809:9936..99481622925319.4246109-UTR-S-dermatodea_contig809:9936..9948Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig809 9937..9948 -
1694079852.3641121-UTR-S-dermatodea_contig809:9936..99481694079852.3641121-UTR-S-dermatodea_contig809:9936..9948Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig809 9937..9948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig809.16281.1

>prot_S-dermatodea_contig809.16281.1 ID=prot_S-dermatodea_contig809.16281.1|Name=mRNA_S-dermatodea_contig809.16281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=181bp
MDLEMLQEVVPMLNQQLEKSMLDRNYVQLERDTIQTFYDITRREVETLEL
KTAAKDREMELMEDNHRVEVRVYVQKVKHLEYEHQNNLKAIAMDGEHLLD
DEAGLHGQRSSGLKRAKKDIKSEVDEKYLLNAEEIAQVKKAHGKTLTKMR
EGFELNLAELRERCDARLTALEDDLELRRKA
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mRNA from alignment at S-dermatodea_contig809:7399..9948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig809.16281.1 ID=mRNA_S-dermatodea_contig809.16281.1|Name=mRNA_S-dermatodea_contig809.16281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2550bp|location=Sequence derived from alignment at S-dermatodea_contig809:7399..9948- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGTATGACAACATGGATCTCGAGATGCTGCAGGAGGTGGTTCCGATGCT CAACCAGCAGCTGGAGAAGTCGATGCTGGACCGCAATTATGTCCAGCTCG AGAGAGTGAGTTGTGGGAGTCTCGTCCTACGCATACACCGTAATGATGCA CCGTGATGCGTTGTCCAGATAGCTGGGCTTCTGTGTAAAACGGGGTGAAG ATGGAAAATGACGGTGGTTTCCGTCGCGGTATCGAACGTGCGAGAGATTA GGAAAACGGTCGGAAGGCGCGATATTCGGTCCCGTATCACGGCGGTCGTA CCACGTTTCCCACCAATTTGGTTGCATGGGCACGTTAAACTGGTGGGTGT ATTTTATTTGAAGTATAAACGCTACGATACTCGCACACGATTCAACACTA CTGAGTGCCGGCCTCACGCATTCTAAATGACAAAAGCCTGCCTCGTTGAA GCGAGTACTATACAATAGGCACCTGGTTTTGTCGTTTCCGGGAAGTGTAG CACACCGTCGCACAATCAGTTCCGCGGTTTACGTACCCGCGATGATATAT CATGCCAACGTGATACCGACACCTCCGCTCTGAAGGTGCTGTGCTTCATT AGCAATCGTGTGAGGCATCCGTAAACTTTGCGTACCGTTCTTTGCTCTGC CTATCGCCCGTTCTGCGCCTGTCAGGATACGATCCAGACATTCTACGACA TTACCCGCCGAGAGGTGGAGACTTTAGAGCTGAAGACCGCCGCCAAGGAC AGGGAAATGGAGCTGATGGAAGACAACCACAGGTAAAGCCATACAGCTCG GTGGGATATTGCTTCAACTCGCAGCAATTCGCATGAAGCTTGCCACTGCC CGAGAGAGGTCCGCCCGTATGCGCATCAAAACCTAACGAGCTTCGTGTAC AAAAGCTGCTATTACGGAGGTACATACCAGTAGTAATCAGGACCGAATCT CGCGACCATTAATACATAAATACGCAACTGTTTCGACCATGAACACCGAG ACAACACCAAAAACTCATGACAAAAAAAATCACAAGGCCTGGCCTATACG ACAAACCCCGACCGTGAATACCCAATCGTTCCGGCCTATTTTGCTTTGCC AAGCTGAGATTCGTGACGAAGTTGGACCTGTTAACGTTAACTATGGCTTA GTCCTCCGTAATGCTGCGGTTAGGGTTAGGGTTAGGATCAACCTCCGACC GTGCGTGTTGATTATGACGAATCTCCGTTTCGGCAGTTTTATCAATGCGA CGTTTCTCTTTCACACGCATACCCTCTCTCCAACACGACATTGTGGGTAC TTAATTGCCTACGCACGCGCTGCCCGTAATCAGGGTTGAGGTTCGCGTGT ACGTGCAAAAAGTCAAGCACCTGGAGTACGAACACCAGAACAACCTTAAG GCCATCGCGATGGACGGCGAGCATTTGCTTGACGATGAAGCCGGTCTCCA CGGGTGAGAGAAGCCTGAGCCTGATGCCATTTTTGAGTCAGGAATAGAGC GCAACGTACTGTTGCTGGTGATAGGAGGGCTTACGGTGGCGGTAGGGAGT GTTTTGGTGAGTGCCCGTACGAGGGTTCGCTGCTTCTGGCACATGGTATC TCGTCGTGATGCGTTTGACGGACGTATGGCAATTCCTAGCCGTTAGGACC TATTGCACGCTTGCCGTAATTTTGAGGGCTGCTGTATGGCGAAATTTCCA CGGTGATACGTGATACTACAGCAGAGCCAGCAGACTTCCGTCGGGTAGTA AAAGCTCGTGCACATTTATCTCCTGGTGATATTTTAGACAATAAACTTGT GCTGGTAGGATCGAGGAATCGACAAGACCTGACTGAGTGCAAGACTGCAG AAGTATTGTGATTGAGTATGCCATGTTTCTTGTTGCCGTCGACCCAGGCA ACGAAGCTCGGGGCTAAAAAGGGCGAAGAAGGATATCAAGAGCGAGGTCG ACGAGAAGTATCTTCTCAACGCCGAGGAGATCGCTCAGGTGTGGGGTGAT GTCTATGTTCCCTGCAAGAATCGACAATGACACAATAGAAGAGGAGCGTA CATGGATGGTGGCAGCACTTGATGACGCAGCGTCTGGCGCACTTCATAGG CAAACTGAGCCAACACCGTCCACCTCGCATGGTATGCATACCGTCTCAGT TGCGAAGCTCGTGGTCCGTCCGGTGACTTGTGTGTTACCCACACGTGCGG TACGTGACCATCACCGCCACAAGACACCCTCAAGCGTAAGATTCCGCTGT GAAACTTGGACTTGCATGCGAACCATCACTTGTTTTTCGACGCCATGATG ACTGGCTACGGCACGCTCACGGCAGGCCCTTGGACCGGAAAAACCCGCCA CATAATTTCGAAAACAAGCAAAACGACGGCAAGATAACCACGCCAACGTA CGAACATAAAACGCGCAGGTCAAGAAAGCGCACGGGAAGACCCTGACTAA AATGCGAGAGGGCTTCGAGCTGAACCTCGCCGAGCTCAGGGAACGATGCG ACGCGAGGCTTACCGCTCTAGAGGATGACTTGGAGTTGCGAAGAAAGGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig809:7399..9948-

>mRNA_S-dermatodea_contig809.16281.1 ID=mRNA_S-dermatodea_contig809.16281.1|Name=mRNA_S-dermatodea_contig809.16281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at S-dermatodea_contig809:7399..9948- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATCTCGAGATGCTGCAGGAGGTGGTTCCGATGCTCAACCAGCAGCT
GGAGAAGTCGATGCTGGACCGCAATTATGTCCAGCTCGAGAGAATGGATC
TCGAGATGCTGCAGGAGGTGGTTCCGATGCTCAACCAGCAGCTGGAGAAG
TCGATGCTGGACCGCAATTATGTCCAGCTCGAGAGAGATACGATCCAGAC
ATTCTACGACATTACCCGCCGAGAGGTGGAGACTTTAGAGCTGAAGACCG
CCGCCAAGGACAGGGAAATGGAGCTGATGGAAGACAACCACAGGATACGA
TCCAGACATTCTACGACATTACCCGCCGAGAGGTGGAGACTTTAGAGCTG
AAGACCGCCGCCAAGGACAGGGAAATGGAGCTGATGGAAGACAACCACAG
GGTTGAGGTTCGCGTGTACGTGCAAAAAGTCAAGCACCTGGAGTACGAAC
ACCAGAACAACCTTAAGGCCATCGCGATGGACGGCGAGCATTTGCTTGAC
GATGAAGCCGGTCTCCACGGGGTTGAGGTTCGCGTGTACGTGCAAAAAGT
CAAGCACCTGGAGTACGAACACCAGAACAACCTTAAGGCCATCGCGATGG
ACGGCGAGCATTTGCTTGACGATGAAGCCGGTCTCCACGGGCAACGAAGC
TCGGGGCTAAAAAGGGCGAAGAAGGATATCAAGAGCGAGGTCGACGAGAA
GTATCTTCTCAACGCCGAGGAGATCGCTCAGGCAACGAAGCTCGGGGCTA
AAAAGGGCGAAGAAGGATATCAAGAGCGAGGTCGACGAGAAGTATCTTCT
CAACGCCGAGGAGATCGCTCAGGTCAAGAAAGCGCACGGGAAGACCCTGA
CTAAAATGCGAGAGGGCTTCGAGCTGAACCTCGCCGAGCTCAGGGAACGA
TGCGACGCGAGGCTTACCGCTCTAGAGGATGACTTGGAGTTGCGAAGAAA
GGCAGTCAAGAAAGCGCACGGGAAGACCCTGACTAAAATGCGAGAGGGCT
TCGAGCTGAACCTCGCCGAGCTCAGGGAACGATGCGACGCGAGGCTTACC
GCTCTAGAGGATGACTTGGAGTTGCGAAGAAAGGCA
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