mRNA_S-dermatodea_contig1264.1628.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1264.1628.1
Unique NamemRNA_S-dermatodea_contig1264.1628.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1264.1628.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 1.980e-103
Identity = 166/291 (57.04%), Postives = 207/291 (71.13%), Query Frame = 1 
Query:  109 DYARHIGVQPTGGLATGRVVTRITVTNCCTG----------KATEDAVKRVVRHSIPTLRSISVKGHYGRYRTGRARVAPIIGELVPVSSKKHRVAPRLTRVTLSDGSTGVVKVGKAIAVGLWPALEKLSLSHCRANAGHFKELAHGLSTGRAPNLRVLNWDDQSSIRETPVDDVILSTLSARRCPLIERLSFTRNYFCPEYGVCFLRGALRGCRSLRKLSMDCSRQPHNELRALADALQVGYAPNLEYLFVRATARFSSESDIALKALRQATAAMRFPVRLKSRIKTRLR 951
            D A H+G++ +G LATGR + RIT+T               KA E AV RVVRHSIPTLR I+++G       GRARV  I+GELVP+S+K+HRVAPRL+RV L DG+TGV K G+A+A GLWPALE L+ SHCRANAGHF++LA GL +G AP LRVL WDDQSS+R+  VDDVIL  LS  +CPL+ERLSFT N FCPE+ + +L  AL  C  LR+L MDCSR PH++LR L  AL  G+ P LE L VRATA +  +SD+ L AL++A A+   PV L+ +IKTRL+
Sbjct:   17 DLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGC--PTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 305
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BLAST of mRNA_S-dermatodea_contig1264.1628.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 5.860e-102
Identity = 163/283 (57.60%), Postives = 207/283 (73.14%), Query Frame = 1 
Query:  109 DYARHIGVQPTGGLATGRVVTRITVT--NCCTGKATEDAVKRVVRHSIPTLRSISVKGHYGRYRTGRARVAPIIGELVPVSSKKHRVAPRLTRVTLSDGSTGVVKVGKAIAVGLWPALEKLSLSHCRANAGHFKELAHGLSTGRAPNLRVLNWDDQSSIRETPVDDVILSTLSARRCPLIERLSFTRNYFCPEYGVCFLRGALRGCRSLRKLSMDCSRQPHNELRALADALQVGYAPNLEYLFVRATARFSSESDIALKALRQATAAMRFPVRLKSRIKTRLR 951
            +   H+G+  +G LATGR V RIT+T  +     A E A++RVV+HSIPTLR I+++G Y  + TGRARV  I+GELVP+S+K+HRVAPRL RV L DG+TGV K G+A+A GLWPALE L+ SHCRANAGHF++LA GL +G AP LRVL WDDQSS+R+  VDDVIL  LS  +CPL+ERLSFT N FCPE+ + +L   L  C  LR+L MDCSR PH++L  LA AL  G+ P LE L VRATAR+  +SD+ L AL++A A+   PV L+ +IKT L+
Sbjct:   21 ELTNHMGLDASGALATGRAVVRITITYVHHFQDPALEQAIRRVVQHSIPTLREIAIRG-YPTW-TGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTLLK 301
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BLAST of mRNA_S-dermatodea_contig1264.1628.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 5.180e-96
Identity = 172/347 (49.57%), Postives = 219/347 (63.11%), Query Frame = 1 
Query:   34 KATLEGFRTPQFMIDELDVCERDDF------------DYARHIGVQPTGGLATGRVVTRITVTNC--CTGKATEDAVKRVVRHSIPTLRSISVKGHYGRYRTGRARV-------------------------AP--IIGELVPVSSKKHRVAPRLTRVTLSDGSTGVVKVGKAIAVGLWPALEKLSLSHCRANAGHFKELAHGLSTGRAPNLRVLNWDDQSSIRETPVDDVILSTLSARRCPLIERLSFTRNYFCPEYGVCFLRGALRGCRSLRKLSMDCSRQPHNELRALADALQVGYAPNLEYLFVRATARFSSESDIALKALRQATAAMRFPVRLKSRIKTRLR 951
            + TL G R   + +D   V     F            +   H+G+  +G LATGR V RIT+T+       A E A++RVV+HSIPTLR I+++G Y  + TGRAR                          AP  I+GELVP+S+K+HRVAPRL RV L DG+TGV K G+A+A GLWPALE L+ SHCRANAGHF++LA GL +G AP LRVL WDDQSSIR+  VDDVIL+ LS  +CPL+E LSFT N FCPE+ + +L   L  C  LR+L MDCSR PH+ELR LA AL  G+ P LE L VRATA +  +SD+ L+AL++  A+   PV L+ +IKTRL+
Sbjct:  104 RTTLGGIRELHYKVDMAKVASAYFFGRLAAAYCSKTLELTDHMGIDASGALATGRAVVRITITHVHETQDPALEQAIRRVVQHSIPTLREITIRG-YPTW-TGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNRFCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAGGHVPRLERLLVRATAPYYRDSDVELRALKRVAASRSPPVELELQIKTRLK 448
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BLAST of mRNA_S-dermatodea_contig1264.1628.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 6.110e-79
Identity = 130/214 (60.75%), Postives = 161/214 (75.23%), Query Frame = 1 
Query:  310 VAPIIGELVPVSSKKHRVAPRLTRVTLSDGSTGVVKVGKAIAVGLWPALEKLSLSHCRANAGHFKELAHGLSTGRAPNLRVLNWDDQSSIRETPVDDVILSTLSARRCPLIERLSFTRNYFCPEYGVCFLRGALRGCRSLRKLSMDCSRQPHNELRALADALQVGYAPNLEYLFVRATARFSSESDIALKALRQATAAMRFPVRLKSRIKTRLR 951
            V  I+GELVP+S+K+HRVAPRL RV L DG+TGV K G+A+A GLWPALE L+ SHCRANAGHF++LA GL +G AP LRVL WDDQSS+R+  VDDVIL  LS  +CPL+ERLSFT N FCPE+ + +L   L  C  LR+L MDCSR PH++L  LA AL  G+ P LE L VRATAR+  +SD+ L AL++A A+   PV L+ +IKTRL+
Sbjct:  309 VGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 522
[Close]
BLAST of mRNA_S-dermatodea_contig1264.1628.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.440e-74
Identity = 125/217 (57.60%), Postives = 153/217 (70.51%), Query Frame = 1 
Query:  301 RARVAPIIGELVPVSSKKHRVAPRLTRVTLSDGSTGVVKVGKAIAVGLWPALEKLSLSHCRANAGHFKELAHGLSTGRAPNLRVLNWDDQSSIRETPVDDVILSTLSARRCPLIERLSFTRNYFCPEYGVCFLRGALRGCRSLRKLSMDCSRQPHNELRALADALQVGYAPNLEYLFVRATARFSSESDIALKALRQATAAMRFPVRLKSRIKTRLR 951
            R RV  I GELVP+S+K+HRVA RL RV L DG+TG  K GKA+A GL PALE  + SHCRANAGHF++LA GL +G AP LRVL WDDQS+IR+  +DDVIL  LS   CPL+ERLSFT   FCPE+ + +L      C  LR+L MDCSR PH++LR LA AL   + P LE L VRATA +  +SD+ L AL+ A A+   PV L+ +IKTRL+
Sbjct:   11 RPRVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTRFCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAGEHVPRLERLLVRATAPYYRDSDVELLALKLAAASRSPPVALELQIKTRLK 227
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1264.1628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAY2_ECTSI1.980e-10357.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWR8_ECTSI5.860e-10257.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDB3_9PHAE5.180e-9649.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR9_ECTSI6.110e-7960.75Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KU71_9PHAE1.440e-7457.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1264contigS-dermatodea_contig1264:12951..14245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size957
Cds size957
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.50047-CDS-S-dermatodea_contig1264:12950..136941622924256.50047-CDS-S-dermatodea_contig1264:12950..13694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 12951..13694 -
1694079129.6792526-CDS-S-dermatodea_contig1264:12950..136941694079129.6792526-CDS-S-dermatodea_contig1264:12950..13694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 12951..13694 -
1622924256.5115833-CDS-S-dermatodea_contig1264:14032..142451622924256.5115833-CDS-S-dermatodea_contig1264:14032..14245Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 14033..14245 -
1694079129.6884866-CDS-S-dermatodea_contig1264:14032..142451694079129.6884866-CDS-S-dermatodea_contig1264:14032..14245Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 14033..14245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1264.1628.1prot_S-dermatodea_contig1264.1628.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1264 12951..14245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1264.1628.1

>prot_S-dermatodea_contig1264.1628.1 ID=prot_S-dermatodea_contig1264.1628.1|Name=mRNA_S-dermatodea_contig1264.1628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=319bp
MGVWRDINAPDKATLEGFRTPQFMIDELDVCERDDFDYARHIGVQPTGGL
ATGRVVTRITVTNCCTGKATEDAVKRVVRHSIPTLRSISVKGHYGRYRTG
RARVAPIIGELVPVSSKKHRVAPRLTRVTLSDGSTGVVKVGKAIAVGLWP
ALEKLSLSHCRANAGHFKELAHGLSTGRAPNLRVLNWDDQSSIRETPVDD
VILSTLSARRCPLIERLSFTRNYFCPEYGVCFLRGALRGCRSLRKLSMDC
SRQPHNELRALADALQVGYAPNLEYLFVRATARFSSESDIALKALRQATA
AMRFPVRLKSRIKTRLRP*
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mRNA from alignment at S-dermatodea_contig1264:12951..14245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1264.1628.1 ID=mRNA_S-dermatodea_contig1264.1628.1|Name=mRNA_S-dermatodea_contig1264.1628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1295bp|location=Sequence derived from alignment at S-dermatodea_contig1264:12951..14245- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGTTTGGAGAGATATCAACGCACCAGACAAGGCGACCCTCGAGGG
CTTTCGTACGCCGCAGTTCATGATCGACGAGCTGGACGTTTGTGAACGGG
ACGATTTCGATTACGCTAGACACATTGGTGTGCAGCCAACTGGAGGGCTG
GCCACGGGCAGAGTAGTGACGCGAATCACAGTCACGAACTGCTGCACCGG
TAAAGCTACGGAGGTGAGGGTTCCGTGATGTGTACAACAGCAGGTCTATG
CTTTTGTACTTGTAAAAGTGATGTCTTTTTCCACGTCTCGAGCATGCCAT
ACGAAAATATGCCTATAAGGGCGACCAGTTGCCCGACATGGATGGTATCA
CCAGAGGGCACCCATCGCTGCGTGGTGACAACAAGCTGGTAGTCATTGTA
TTTGTTTATTCTTAGATCGCGCCCCTCCAACATGCCCTTTCCGTCGACCA
GCAGTGCAAGCACCACCCACGCCTCGTTTACGCATACAGTGCACGCCTGC
GCCCCTTTTTCCTTCTCCCTTCGATCGCAAAAGGGATACACGGACCTCGA
GGATGCGGTCAAGCGAGTTGTGCGGCACTCCATTCCCACCCTACGCTCGA
TCTCCGTCAAGGGACATTACGGGAGATATCGTACTGGCCGCGCTAGGGTG
GCGCCCATCATCGGCGAGCTCGTTCCTGTTTCCTCCAAGAAGCACCGCGT
CGCTCCGAGGCTCACCCGGGTGACACTCAGCGACGGGTCCACCGGCGTGG
TCAAAGTGGGCAAGGCGATCGCGGTAGGGCTGTGGCCGGCGCTGGAGAAG
CTTAGCCTGTCCCACTGCCGCGCGAATGCAGGCCATTTTAAGGAGCTGGC
CCACGGCCTCAGCACGGGGCGCGCTCCAAACCTGCGTGTGCTGAACTGGG
ATGACCAGTCCTCCATCAGGGAGACACCGGTCGACGACGTCATTCTGTCG
ACCCTGTCCGCTCGTAGGTGCCCTCTCATCGAACGGCTGAGTTTCACTCG
AAACTATTTTTGCCCGGAGTATGGCGTCTGCTTCCTGAGGGGAGCGCTCC
GGGGTTGCCGGAGTCTGCGGAAGCTCTCGATGGATTGCTCCCGGCAGCCC
CACAACGAATTGCGGGCCTTGGCTGACGCTCTGCAGGTGGGGTACGCGCC
GAATCTGGAGTACCTATTTGTTCGCGCCACCGCCCGGTTCTCTTCGGAGA
GCGACATAGCACTGAAAGCGCTGAGGCAGGCGACTGCGGCGATGAGGTTT
CCGGTTCGCCTAAAATCGAGGATCAAGACGCGTCTGCGCCCATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1264:12951..14245-

>mRNA_S-dermatodea_contig1264.1628.1 ID=mRNA_S-dermatodea_contig1264.1628.1|Name=mRNA_S-dermatodea_contig1264.1628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at S-dermatodea_contig1264:12951..14245- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGTTTGGAGAGATATCAACGCACCAGACAAGGCGACCCTCGAGGG
CTTTCGTACGCCGCAGTTCATGATCGACGAGCTGGACGTTTGTGAACGGG
ACGATTTCGATTACGCTAGACACATTGGTGTGCAGCCAACTGGAGGGCTG
GCCACGGGCAGAGTAGTGACGCGAATCACAGTCACGAACTGCTGCACCGG
TAAAGCTACGGAGATGGGCGTTTGGAGAGATATCAACGCACCAGACAAGG
CGACCCTCGAGGGCTTTCGTACGCCGCAGTTCATGATCGACGAGCTGGAC
GTTTGTGAACGGGACGATTTCGATTACGCTAGACACATTGGTGTGCAGCC
AACTGGAGGGCTGGCCACGGGCAGAGTAGTGACGCGAATCACAGTCACGA
ACTGCTGCACCGGTAAAGCTACGGAGGATGCGGTCAAGCGAGTTGTGCGG
CACTCCATTCCCACCCTACGCTCGATCTCCGTCAAGGGACATTACGGGAG
ATATCGTACTGGCCGCGCTAGGGTGGCGCCCATCATCGGCGAGCTCGTTC
CTGTTTCCTCCAAGAAGCACCGCGTCGCTCCGAGGCTCACCCGGGTGACA
CTCAGCGACGGGTCCACCGGCGTGGTCAAAGTGGGCAAGGCGATCGCGGT
AGGGCTGTGGCCGGCGCTGGAGAAGCTTAGCCTGTCCCACTGCCGCGCGA
ATGCAGGCCATTTTAAGGAGCTGGCCCACGGCCTCAGCACGGGGCGCGCT
CCAAACCTGCGTGTGCTGAACTGGGATGACCAGTCCTCCATCAGGGAGAC
ACCGGTCGACGACGTCATTCTGTCGACCCTGTCCGCTCGTAGGTGCCCTC
TCATCGAACGGCTGAGTTTCACTCGAAACTATTTTTGCCCGGAGTATGGC
GTCTGCTTCCTGAGGGGAGCGCTCCGGGGTTGCCGGAGTCTGCGGAAGCT
CTCGATGGATTGCTCCCGGCAGCCCCACAACGAATTGCGGGCCTTGGCTG
ACGCTCTGCAGGTGGGGTACGCGCCGAATCTGGAGTACCTATTTGTTCGC
GCCACCGCCCGGTTCTCTTCGGAGAGCGACATAGCACTGAAAGCGCTGAG
GCAGGCGACTGCGGCGATGAGGTTTCCGGTTCGCCTAAAATCGAGGATCA
AGACGCGTCTGCGCCCATAGGATGCGGTCAAGCGAGTTGTGCGGCACTCC
ATTCCCACCCTACGCTCGATCTCCGTCAAGGGACATTACGGGAGATATCG
TACTGGCCGCGCTAGGGTGGCGCCCATCATCGGCGAGCTCGTTCCTGTTT
CCTCCAAGAAGCACCGCGTCGCTCCGAGGCTCACCCGGGTGACACTCAGC
GACGGGTCCACCGGCGTGGTCAAAGTGGGCAAGGCGATCGCGGTAGGGCT
GTGGCCGGCGCTGGAGAAGCTTAGCCTGTCCCACTGCCGCGCGAATGCAG
GCCATTTTAAGGAGCTGGCCCACGGCCTCAGCACGGGGCGCGCTCCAAAC
CTGCGTGTGCTGAACTGGGATGACCAGTCCTCCATCAGGGAGACACCGGT
CGACGACGTCATTCTGTCGACCCTGTCCGCTCGTAGGTGCCCTCTCATCG
AACGGCTGAGTTTCACTCGAAACTATTTTTGCCCGGAGTATGGCGTCTGC
TTCCTGAGGGGAGCGCTCCGGGGTTGCCGGAGTCTGCGGAAGCTCTCGAT
GGATTGCTCCCGGCAGCCCCACAACGAATTGCGGGCCTTGGCTGACGCTC
TGCAGGTGGGGTACGCGCCGAATCTGGAGTACCTATTTGTTCGCGCCACC
GCCCGGTTCTCTTCGGAGAGCGACATAGCACTGAAAGCGCTGAGGCAGGC
GACTGCGGCGATGAGGTTTCCGGTTCGCCTAAAATCGAGGATCAAGACGC
GTCTGCGCCCATAG
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