prot_S-dermatodea_contig80879.16278.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig80879.16278.1
Unique Nameprot_S-dermatodea_contig80879.16278.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length38
Homology
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.550e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            MDEFDVFMDA SRNIAIKQV+ FAK D+SRQFILITPQ
Sbjct: 1191 MDEFDVFMDAMSRNIAIKQVIEFAKRDSSRQFILITPQ 1228          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            MDEFDVFMDA SR+ AI +V+ FAK +  +QFI ITPQ
Sbjct: 1092 MDEFDVFMDAVSRDHAILEVLKFAKRNKDKQFIFITPQ 1129          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A836CNS7_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNS7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            MDEFDVFMDAQ+R +AI Q++  A+    RQFI ITPQ
Sbjct: 1026 MDEFDVFMDAQARRVAIAQLIAHARTQRQRQFIFITPQ 1063          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            MDEFDVFMDAQSR  A++Q++  A+ +  RQFI ITPQ
Sbjct: 1169 MDEFDVFMDAQSRQAAMRQLVKHARENPGRQFIFITPQ 1206          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A194SAJ9_RHOGW (SMC_N domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194SAJ9_RHOGW)

HSP 1 Score: 50.1 bits (118), Expect = 5.910e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            +DEFDVFMDA +R IA+K +++ AK  N  QFILITPQ
Sbjct: 1056 LDEFDVFMDAVNRRIAMKMMIDTAKTANRTQFILITPQ 1093          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A5C5G0N5_9BASI (RecF/RecN/SMC n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G0N5_9BASI)

HSP 1 Score: 48.5 bits (114), Expect = 2.070e-5
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            +DEFDVFMDA +R IA+K +++ AK  +  QFILITPQ
Sbjct: 1065 LDEFDVFMDAVNRRIAMKMMIDTAKTAHQTQFILITPQ 1102          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A1Y1W652_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W652_9FUNG)

HSP 1 Score: 48.5 bits (114), Expect = 2.070e-5
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            +DEFDVFMDA +R IA++ +++ AK+ ++ QFILITPQ
Sbjct: 1049 LDEFDVFMDAANRAIAMRMMVDSAKSSSTTQFILITPQ 1086          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A7S1GII4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GII4_CYCTE)

HSP 1 Score: 46.6 bits (109), Expect = 3.860e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            MDEFDVF+DA +R +A++ ++  AK   +RQFI ITPQ
Sbjct:   67 MDEFDVFLDAVARRLALRNLIEVAKHMENRQFIFITPQ 104          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A8H3TW54_9TREE (SMC_N domain-containing protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TW54_9TREE)

HSP 1 Score: 47.8 bits (112), Expect = 3.880e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            +DEFDVFMDA +R +A+  +M  AK    RQ+ILITPQ
Sbjct: 1070 LDEFDVFMDAHNRKLAMSLLMETAKYQTDRQYILITPQ 1107          
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A4S8MRE9_DENBC (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MRE9_DENBC)

HSP 1 Score: 47.0 bits (110), Expect = 7.260e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 38
            +DEFDVFMDA +R IA+K +++ A   + +Q+ILITPQ
Sbjct: 1087 LDEFDVFMDAVNRRIAMKMMIDTANQSDKKQYILITPQ 1124          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G4M2_ECTSI4.550e-1286.84Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G4M1_ECTSI1.230e-665.79Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A836CNS7_9STRA1.230e-663.16RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A836CML4_9STRA1.690e-663.16P-loop containing nucleoside triphosphate hydrolas... [more]
A0A194SAJ9_RHOGW5.910e-663.16SMC_N domain-containing protein n=1 Tax=Rhodotorul... [more]
A0A5C5G0N5_9BASI2.070e-560.53RecF/RecN/SMC n=1 Tax=Rhodotorula diobovata TaxID=... [more]
A0A1Y1W652_9FUNG2.070e-557.89p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1GII4_CYCTE3.860e-555.26Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A8H3TW54_9TREE3.880e-557.89SMC_N domain-containing protein n=1 Tax=Naganishia... [more]
A0A4S8MRE9_DENBC7.260e-555.26P-loop containing nucleoside triphosphate hydrolas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 1..38
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 1..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80879contigS-dermatodea_contig80879:186..299 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80879.16278.1mRNA_S-dermatodea_contig80879.16278.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig80879 180..299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig80879.16278.1 ID=prot_S-dermatodea_contig80879.16278.1|Name=mRNA_S-dermatodea_contig80879.16278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027132SMC6