mRNA_S-dermatodea_contig80879.16278.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80879.16278.1
Unique NamemRNA_S-dermatodea_contig80879.16278.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-13
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            RVMDEFDVFMDA SRNIAIKQV+ FAK D+SRQFILITPQ
Sbjct: 1189 RVMDEFDVFMDAMSRNIAIKQVIEFAKRDSSRQFILITPQ 1228
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.320e-8
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            RVMDEFDVFMDA SR+ AI +V+ FAK +  +QFI ITPQ
Sbjct: 1090 RVMDEFDVFMDAVSRDHAILEVLKFAKRNKDKQFIFITPQ 1129
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.910e-8
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            RVMDEFDVFMDAQSR  A++Q++  A+ +  RQFI ITPQ
Sbjct: 1167 RVMDEFDVFMDAQSRQAAMRQLVKHARENPGRQFIFITPQ 1206
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A836CNS7_9STRA (RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNS7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.510e-7
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            R MDEFDVFMDAQ+R +AI Q++  A+    RQFI ITPQ
Sbjct: 1024 RAMDEFDVFMDAQARRVAIAQLIAHARTQRQRQFIFITPQ 1063
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A7S1GII4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GII4_CYCTE)

HSP 1 Score: 50.8 bits (120), Expect = 9.850e-7
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            RVMDEFDVF+DA +R +A++ ++  AK   +RQFI ITPQ
Sbjct:   65 RVMDEFDVFLDAVARRLALRNLIEVAKHMENRQFIFITPQ 104
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A194SAJ9_RHOGW (SMC_N domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194SAJ9_RHOGW)

HSP 1 Score: 52.4 bits (124), Expect = 9.900e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            R +DEFDVFMDA +R IA+K +++ AK  N  QFILITPQ
Sbjct: 1054 RCLDEFDVFMDAVNRRIAMKMMIDTAKTANRTQFILITPQ 1093
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A1Y1W652_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W652_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 2.540e-6
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            R +DEFDVFMDA +R IA++ +++ AK+ ++ QFILITPQ
Sbjct: 1047 RALDEFDVFMDAANRAIAMRMMVDSAKSSSTTQFILITPQ 1086
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A7S3UWL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL6_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 2.890e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKAD--NSRQFILITPQ 120
            RVMDEFD+FMDA +R +A++QV+    AD   +RQ ILITPQ
Sbjct:  171 RVMDEFDIFMDAMARKLAMQQVIEHGMADFMENRQMILITPQ 212
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: UPI000C7810C0 (uncharacterized protein LOC111702417 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7810C0)

HSP 1 Score: 50.8 bits (120), Expect = 3.460e-6
Identity = 19/39 (48.72%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITP 117
            R++DEFDVFMDA +R I+++ ++N+A+ D   QF+ +TP
Sbjct: 2163 RILDEFDVFMDAVNRRISVQNIINYAREDRRNQFMFLTP 2201
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BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Match: A0A5C5G0N5_9BASI (RecF/RecN/SMC n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G0N5_9BASI)

HSP 1 Score: 50.8 bits (120), Expect = 3.470e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 RVMDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ 120
            R +DEFDVFMDA +R IA+K +++ AK  +  QFILITPQ
Sbjct: 1063 RCLDEFDVFMDAVNRRIAMKMMIDTAKTAHQTQFILITPQ 1102
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80879.16278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M2_ECTSI1.610e-1387.50Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G4M1_ECTSI4.320e-867.50Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A836CML4_9STRA5.910e-865.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CNS7_9STRA1.510e-762.50RecF/RecN/SMC n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1GII4_CYCTE9.850e-757.50Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A194SAJ9_RHOGW9.900e-762.50SMC_N domain-containing protein n=1 Tax=Rhodotorul... [more]
A0A1Y1W652_9FUNG2.540e-657.50p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3UWL6_HETAK2.890e-659.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000C7810C03.460e-648.72uncharacterized protein LOC111702417 n=1 Tax=Euryt... [more]
A0A5C5G0N5_9BASI3.470e-660.00RecF/RecN/SMC n=1 Tax=Rhodotorula diobovata TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80879contigS-dermatodea_contig80879:180..299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue9.7e-10
Seed eggNOG ortholog2880.D7G4M2
Preferred nameSMC6
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
EggNOG free text desc.double-strand break repair via homologous recombination
EggNOG OGsCOG1196@1,KOG0250@2759
EC3.6.4.13
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size114
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.107215-UTR-S-dermatodea_contig80879:179..1851622925319.107215-UTR-S-dermatodea_contig80879:179..185Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80879 180..185 +
1694079852.0946105-UTR-S-dermatodea_contig80879:179..1851694079852.0946105-UTR-S-dermatodea_contig80879:179..185Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80879 180..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925319.119942-CDS-S-dermatodea_contig80879:185..2991622925319.119942-CDS-S-dermatodea_contig80879:185..299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80879 186..299 +
1694079852.1082733-CDS-S-dermatodea_contig80879:185..2991694079852.1082733-CDS-S-dermatodea_contig80879:185..299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80879 186..299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80879.16278.1prot_S-dermatodea_contig80879.16278.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80879 186..299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80879.16278.1

>prot_S-dermatodea_contig80879.16278.1 ID=prot_S-dermatodea_contig80879.16278.1|Name=mRNA_S-dermatodea_contig80879.16278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
MDEFDVFMDAQSRNIAIKQVMNFAKADNSRQFILITPQ
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mRNA from alignment at S-dermatodea_contig80879:180..299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80879.16278.1 ID=mRNA_S-dermatodea_contig80879.16278.1|Name=mRNA_S-dermatodea_contig80879.16278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at S-dermatodea_contig80879:180..299+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGTCATGGACGAGTTCGACGTCTTCATGGACGCCCAGAGCCGCAACAT
CGCCATCAAGCAGGTCATGAACTTCGCCAAGGCTGACAACTCGAGGCAGT
TCATCCTCATCACACCTCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80879:180..299+

>mRNA_S-dermatodea_contig80879.16278.1 ID=mRNA_S-dermatodea_contig80879.16278.1|Name=mRNA_S-dermatodea_contig80879.16278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig80879:180..299+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGAGTTCGACGTCTTCATGGACGCCCAGAGCCGCAACATCGCCAT
CAAGCAGGTCATGAACTTCGCCAAGGCTGACAACTCGAGGCAGTTCATCC
TCATCACACCTCAGATGGACGAGTTCGACGTCTTCATGGACGCCCAGAGC
CGCAACATCGCCATCAAGCAGGTCATGAACTTCGCCAAGGCTGACAACTC
GAGGCAGTTCATCCTCATCACACCTCAG
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