mRNA_S-dermatodea_contig80798.16270.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80798.16270.1
Unique NamemRNA_S-dermatodea_contig80798.16270.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: D7G854_ECTSI (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G854_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 5.760e-72
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 1 
Query:   19 WESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGG-GVNALALAPSGAGAA-KPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS 408
            WESPFG GRPGWHIECSAMTH+LFG +LD+HSGGVDLKFPHHTNEIAQCEAH CGG    A A    G G   KPWVRHWIHTGHLNIEGLKMSKSLKNFVT+REYLEGHSAG+ AAAEDFRMFCLMHKYSS
Sbjct:  243 WESPFGRGRPGWHIECSAMTHSLFGPNLDVHSGGVDLKFPHHTNEIAQCEAHACGGVAATAAATGDGGVGGERKPWVRHWIHTGHLNIEGLKMSKSLKNFVTIREYLEGHSAGQEAAAEDFRMFCLMHKYSS 374
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A836CJU0_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.060e-55
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1 
Query:    1 RNGTSRWESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAG-AAKP-----------------------WVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS 408
            + G   W+SPFG GRPGWHIECSAMTHALFG  LD+H+GG+DLKFPHHTNEIAQC+AH   G   A   +P   G AA+P                       W RHW+HTGH++IEGLKMSKSLKNF+TV+EY+E H  G V A++DFR+FCLMH+Y++
Sbjct:  324 KEGEPSWDSPFGRGRPGWHIECSAMTHALFGSDLDVHTGGIDLKFPHHTNEIAQCDAHASRGLCCAPPPSPPHTGTAAEPPNTRGIIGAPNPDARSGGQQGGEWCRHWLHTGHVHIEGLKMSKSLKNFITVKEYIEAHGGGAVQASQDFRIFCLMHRYTA 483
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A7S1UEW0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEW0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.240e-49
Identity = 81/138 (58.70%), Postives = 95/138 (68.84%), Query Frame = 1 
Query:    1 RNGTSRWESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVA--AAEDFRMFCLMHKYSS 408
            + G   W+SP+GPGRPGWHIECSAMTHA+FG  LD+HSGGVDL FPHH NEIAQCEAHN                A+  WV+HW+H GHL+IEG KMSKSLKNFV+V +      AG     AA+DFR+FCL  +Y S
Sbjct:  113 KGGEISWDSPWGPGRPGWHIECSAMTHAIFGPELDIHSGGVDLCFPHHCNEIAQCEAHN----------------ASDAWVKHWVHAGHLHIEGRKMSKSLKNFVSVEDLFGKIYAGADPRDAADDFRLFCLSQRYRS 234
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: K3W8N7_GLOUD (Cysteine--tRNA ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8N7_GLOUD)

HSP 1 Score: 171 bits (434), Expect = 9.710e-48
Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = 1 
Query:    7 GTSRWESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS 408
            G   W+SP+GPGRPGWHIECSAMTH + G  LDLHSGG+DL+FPHH NEIAQCEAHNCG  V+     P        W +H++H GHL I+GLKMSKSLKNF++++E+LE H+A      + FR+FCL  KY S
Sbjct:  197 GEPSWDSPWGPGRPGWHIECSAMTHHVLGDKLDLHSGGIDLRFPHHNNEIAQCEAHNCG--VDHYHHHPE-------WCKHFVHFGHLYIQGLKMSKSLKNFISIKEFLEDHTA------DQFRLFCLQFKYRS 315
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A7R9Y8Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Y4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.970e-46
Identity = 80/136 (58.82%), Postives = 94/136 (69.12%), Query Frame = 1 
Query:    7 GTSRWESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGR--VAAAEDFRMFCLMHKYSS 408
            G   WES +GPGRPGWHIECSAMT++LFG+ LD+HSGGVDL FPHH NEIAQCEAH   G               K WV+ W+H GHL+I+G KMSKSLKNF+TVRE  +    G+   AAA+DFR FCL  +Y S
Sbjct:  128 GEISWESKWGPGRPGWHIECSAMTYSLFGEQLDIHSGGVDLCFPHHCNEIAQCEAHFLNG---------------KEWVKLWLHAGHLHIDGRKMSKSLKNFITVRELFDEMYTGQPTAAAADDFRFFCLGQRYRS 248
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A8K1CC06_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC06_PYTOL)

HSP 1 Score: 165 bits (418), Expect = 2.650e-45
Identity = 76/128 (59.38%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:   19 WESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKY 402
            W SP+GPGRPGWHIECSAMTH + G  LD+HSGG+DLKFPHH NEIAQCEAHNC    +A             W RH++H GHL I GLKMSKSLKNF++++E+L  HSA      + FR+FCL +KY
Sbjct:  244 WPSPWGPGRPGWHIECSAMTHRVLGDRLDVHSGGIDLKFPHHNNEIAQCEAHNCSHLHDA------------EWCRHFVHFGHLYIRGLKMSKSLKNFISIKEFLATHSA------DHFRLFCLQYKY 353
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A5D6Y496_9STRA (Cysteine--tRNA ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y496_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.680e-44
Identity = 76/130 (58.46%), Postives = 96/130 (73.85%), Query Frame = 1 
Query:   19 WESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS 408
            W+SP+G GRPGWHIECSAMTH + G  LD+H+GG+DLKFPHH NEIAQCEAH+C    + L  A S AG    W +H++H GHL I+GLKMSKSLKNF++++++L  HSA      + FR+FCL  KY S
Sbjct:  241 WDSPWGRGRPGWHIECSAMTHYVLGAKLDVHTGGIDLKFPHHNNEIAQCEAHSC---CSPLP-AGSAAGNDDDWCKHFVHFGHLYIQGLKMSKSLKNFISIQDFLATHSA------DHFRLFCLQFKYRS 360
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A2D4BU96_PYTIN (Cysteine-tRNA ligase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU96_PYTIN)

HSP 1 Score: 161 bits (407), Expect = 4.010e-44
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:   19 WESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNC---GGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKY 402
            W SP+G GRPGWHIECSAMTH + G  LD+H+GG+DLKFPHH NEIAQCEAHN      G +A AL    +G  + W RH+IH GHL I GLKMSKSLKNF++V+++LE HSA      + FR+F   HKY
Sbjct:  101 WPSPWGAGRPGWHIECSAMTHRVLGAKLDVHTGGIDLKFPHHNNEIAQCEAHNGLVPSAGAHACALHHPHSGEDE-WCRHFIHFGHLYIRGLKMSKSLKNFISVQDFLETHSA------DQFRVFXXQHKY 224
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A0H5QTY7_9EUKA (tRNA-synt_1e domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QTY7_9EUKA)

HSP 1 Score: 156 bits (394), Expect = 2.550e-43
Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:   19 WESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS 408
            WESP+GPGRPGWHIECSAM+ ++FG+HLD+H GG+DLKFPHH NE+AQCEA                  ++  W   ++HTGHL+I+G+KMSKSLKNF++V ++L  H        + FRMFCL+H+Y S
Sbjct:  124 WESPWGPGRPGWHIECSAMSSSVFGRHLDIHGGGIDLKFPHHNNEVAQCEA----------------CFSSNSWATQFLHTGHLHIDGVKMSKSLKNFLSVDDFLADHEP------DSFRMFCLLHRYRS 231
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BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Match: A0A024G9T2_9STRA (Cysteine--tRNA ligase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9T2_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.280e-43
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:   19 WESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTNEIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKSLKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS 408
            WESP+GPGRPGWHIECSAM H + GK +DLH+GG+DL+FPHH NEIAQ EA+N        +L  +     KPW RH++H GHL I+G KMSKSLKNF T+  +LE ++A      ++FR+FCL +KY S
Sbjct:  236 WESPWGPGRPGWHIECSAMIHHVLGKTIDLHTGGIDLRFPHHNNEIAQSEAYNHSHSETCCSLQVN-----KPWCRHFLHFGHLYIQGQKMSKSLKNFTTIEAFLEKNTA------DEFRVFCLQYKYRS 354
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80798.16270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G854_ECTSI5.760e-7283.33Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A836CJU0_9STRA2.060e-5556.88Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S1UEW0_9STRA1.240e-4958.70Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
K3W8N7_GLOUD9.710e-4858.96Cysteine--tRNA ligase n=1 Tax=Globisporangium ulti... [more]
A0A7R9Y8Y4_9STRA2.970e-4658.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1CC06_PYTOL2.650e-4559.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y496_9STRA1.680e-4458.46Cysteine--tRNA ligase n=1 Tax=Pythium brassicum Ta... [more]
A0A2D4BU96_PYTIN4.010e-4459.54Cysteine-tRNA ligase (Fragment) n=1 Tax=Pythium in... [more]
A0A0H5QTY7_9EUKA2.550e-4353.08tRNA-synt_1e domain-containing protein n=2 Tax=Spo... [more]
A0A024G9T2_9STRA6.280e-4356.15Cysteine--tRNA ligase n=1 Tax=Albugo candida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80798contigS-dermatodea_contig80798:242..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue7.3e-60
Seed eggNOG ortholog2880.D7G854
Preferred nameCARS2
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.cysteinyl-tRNA aminoacylation
EggNOG OGsCOG0215@1,KOG2007@2759
EC6.1.1.16
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCysteinyl-tRNA Synthetase
Ec32 orthologEc-12_001440.1
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.582935-CDS-S-dermatodea_contig80798:241..6491622925318.582935-CDS-S-dermatodea_contig80798:241..649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80798 242..649 -
1694079851.7011974-CDS-S-dermatodea_contig80798:241..6491694079851.7011974-CDS-S-dermatodea_contig80798:241..649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80798 242..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80798.16270.1prot_S-dermatodea_contig80798.16270.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80798 242..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80798.16270.1

>prot_S-dermatodea_contig80798.16270.1 ID=prot_S-dermatodea_contig80798.16270.1|Name=mRNA_S-dermatodea_contig80798.16270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
RNGTSRWESPFGPGRPGWHIECSAMTHALFGKHLDLHSGGVDLKFPHHTN
EIAQCEAHNCGGGVNALALAPSGAGAAKPWVRHWIHTGHLNIEGLKMSKS
LKNFVTVREYLEGHSAGRVAAAEDFRMFCLMHKYSS
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mRNA from alignment at S-dermatodea_contig80798:242..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80798.16270.1 ID=mRNA_S-dermatodea_contig80798.16270.1|Name=mRNA_S-dermatodea_contig80798.16270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig80798:242..649- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAACGGAACGAGCAGGTGGGAATCGCCCTTCGGACCGGGCAGGCCAGG
CTGGCACATCGAGTGCTCCGCCATGACCCACGCTCTCTTCGGGAAGCACT
TGGACCTGCACAGCGGAGGAGTGGATCTCAAGTTCCCTCACCACACCAAC
GAGATCGCGCAGTGCGAGGCGCACAACTGTGGCGGCGGTGTCAACGCCTT
GGCTTTGGCGCCGAGCGGGGCGGGGGCGGCGAAGCCCTGGGTTAGGCACT
GGATTCACACGGGGCACCTGAACATCGAGGGCCTAAAGATGTCGAAGTCT
CTGAAGAATTTCGTGACCGTTCGGGAGTACCTGGAAGGGCATTCGGCGGG
GCGCGTGGCGGCCGCGGAGGACTTCCGGATGTTCTGCCTCATGCACAAGT
ACAGCTCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80798:242..649-

>mRNA_S-dermatodea_contig80798.16270.1 ID=mRNA_S-dermatodea_contig80798.16270.1|Name=mRNA_S-dermatodea_contig80798.16270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig80798:242..649- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAACGGAACGAGCAGGTGGGAATCGCCCTTCGGACCGGGCAGGCCAGG
CTGGCACATCGAGTGCTCCGCCATGACCCACGCTCTCTTCGGGAAGCACT
TGGACCTGCACAGCGGAGGAGTGGATCTCAAGTTCCCTCACCACACCAAC
GAGATCGCGCAGTGCGAGGCGCACAACTGTGGCGGCGGTGTCAACGCCTT
GGCTTTGGCGCCGAGCGGGGCGGGGGCGGCGAAGCCCTGGGTTAGGCACT
GGATTCACACGGGGCACCTGAACATCGAGGGCCTAAAGATGTCGAAGTCT
CTGAAGAATTTCGTGACCGTTCGGGAGTACCTGGAAGGGCATTCGGCGGG
GCGCGTGGCGGCCGCGGAGGACTTCCGGATGTTCTGCCTCATGCACAAGT
ACAGCTCACGGAACGGAACGAGCAGGTGGGAATCGCCCTTCGGACCGGGC
AGGCCAGGCTGGCACATCGAGTGCTCCGCCATGACCCACGCTCTCTTCGG
GAAGCACTTGGACCTGCACAGCGGAGGAGTGGATCTCAAGTTCCCTCACC
ACACCAACGAGATCGCGCAGTGCGAGGCGCACAACTGTGGCGGCGGTGTC
AACGCCTTGGCTTTGGCGCCGAGCGGGGCGGGGGCGGCGAAGCCCTGGGT
TAGGCACTGGATTCACACGGGGCACCTGAACATCGAGGGCCTAAAGATGT
CGAAGTCTCTGAAGAATTTCGTGACCGTTCGGGAGTACCTGGAAGGGCAT
TCGGCGGGGCGCGTGGCGGCCGCGGAGGACTTCCGGATGTTCTGCCTCAT
GCACAAGTACAGCTCA
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