mRNA_S-dermatodea_contig8079.16268.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8079.16268.1
Unique NamemRNA_S-dermatodea_contig8079.16268.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8079.16268.1 vs. uniprot
Match: A0A6H5L4D5_9PHAE (PFU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4D5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.830e-37
Identity = 71/119 (59.66%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:   31 DVPEFFLCAALEGHEGDVRSLAVGARHLYSGARDNAVMAWELDKNGHIGGIHRSPSAKTPLPDWVNALTVRQ--GESEVVVGGCKDGGIYVMEWKGGIEAS--------GGEKRLVVEK 357
            D+PEF LCAAL GH GDVRSLAVG R+LYSGARD+ VMAW LD++GHI G H +P+A+  LPDWVNAL V+   G  EV+VGGCKDGGIY + W+ G  A         G   +LVV K
Sbjct:   32 DIPEFSLCAALVGHTGDVRSLAVGKRNLYSGARDSVVMAWPLDEDGHIDGTHVAPAAQVTLPDWVNALAVKSPAGGEEVIVGGCKDGGIYAVGWEEGGPAXXXXXXXXXGNGAKLVVRK 150
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8079.16268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4D5_9PHAE4.830e-3759.66PFU domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8079contigS-dermatodea_contig8079:5517..7952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D8LHW3
Preferred namePLAA
KEGG rclassRC00002,RC00010,RC00043,RC02750,RC02798,RC03314
KEGG koko:K01090,ko:K01955,ko:K11412,ko:K14018
KEGG ReactionR00256,R00575,R01395,R10948,R10949
KEGG Pathwayko00240,ko00250,ko01100,ko04141,map00240,map00250,map01100,map04141
KEGG ModuleM00051
GOsGO:0000726,GO:0001558,GO:0002237,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006644,GO:0006690,GO:0006692,GO:0006693,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010498,GO:0010517,GO:0010518,GO:0010605,GO:0010720,GO:0010975,GO:0010976,GO:0010992,GO:0016004,GO:0016005,GO:0016043,GO:0016236,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019222,GO:0019538,GO:0019637,GO:0019725,GO:0019752,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030163,GO:0030234,GO:0030307,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032429,GO:0032430,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0033554,GO:0033559,GO:0033993,GO:0034517,GO:0034641,GO:0035973,GO:0036211,GO:0040008,GO:0040012,GO:0040017,GO:0042221,GO:0042592,GO:0043085,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044421,GO:0044424,GO:0044464,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045927,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051276,GO:0051336,GO:0051345,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0060191,GO:0060193,GO:0060229,GO:0060255,GO:0060284,GO:0060341,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070062,GO:0070647,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0072671,GO:0080090,GO:0090304,GO:0098693,GO:0098772,GO:0120035,GO:1900044,GO:1900045,GO:1901360,GO:1901564,GO:1901565,GO:1901568,GO:1901575,GO:1901700,GO:1901701,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1903421,GO:1903423,GO:1903561,GO:1903859,GO:1903861,GO:2000026,GO:2000145,GO:2000147,GO:2001222,GO:2001224
EggNOG free text desc.phospholipase A2 activator activity
EggNOG OGsKOG0301@1,KOG0301@2759
EC3.1.3.16,6.3.5.5
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.508119-CDS-S-dermatodea_contig8079:5516..57141622925318.508119-CDS-S-dermatodea_contig8079:5516..5714Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8079 5517..5714 -
1694079851.6547103-CDS-S-dermatodea_contig8079:5516..57141694079851.6547103-CDS-S-dermatodea_contig8079:5516..5714Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8079 5517..5714 -
1622925318.5220964-CDS-S-dermatodea_contig8079:7790..79521622925318.5220964-CDS-S-dermatodea_contig8079:7790..7952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8079 7791..7952 -
1694079851.667036-CDS-S-dermatodea_contig8079:7790..79521694079851.667036-CDS-S-dermatodea_contig8079:7790..7952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8079 7791..7952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8079.16268.1prot_S-dermatodea_contig8079.16268.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8079 5517..7952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8079.16268.1

>prot_S-dermatodea_contig8079.16268.1 ID=prot_S-dermatodea_contig8079.16268.1|Name=mRNA_S-dermatodea_contig8079.16268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
AANLSAEGRDDVPEFFLCAALEGHEGDVRSLAVGARHLYSGARDNAVMAW
ELDKNGHIGGIHRSPSAKTPLPDWVNALTVRQGESEVVVGGCKDGGIYVM
EWKGGIEASGGEKRLVVEK*
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mRNA from alignment at S-dermatodea_contig8079:5517..7952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8079.16268.1 ID=mRNA_S-dermatodea_contig8079.16268.1|Name=mRNA_S-dermatodea_contig8079.16268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2436bp|location=Sequence derived from alignment at S-dermatodea_contig8079:5517..7952- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGAATCTCAGTGCGGAGGGCAGAGACGATGTGCCGGAGTTCTTCTT
GTGTGCTGCACTGGAGGGCCACGAGGGGGATGTCAGGAGCTTGGCGGTCG
GGGCGCGTCACCTCTACAGCGGGGCGAGAGATAACGCGGTCATGGCCTGG
GAGTTGGACAAGGTGCAAGCCGAGGATTAGGACGCCTAGGGTTGTATACT
GAAGCAAGCAAGGTTCTCTAAAGGTTTTACTTATCCTACTCTTGTTTTTG
TGTTTTTGAGCGGAGCGCAGATGCTGCGTCCAGTGAGTGAGCGCCGTCGT
CCAAGCTGCTTTTGAACGATTTAGTGCTTCCAGACGCCACTATCAACGAA
ACAAAATTGAGCCGAAGTATTGGAGAGTTTTTTTAATCGACCGCGGAGTC
ACCTTGCAGGGCAGGCAACTCCTCTGTTACCCGCCCGGTGTTTTTTGTTG
ACTTCTTATCCCGTGTCTGTCAGTATCACTTTATCACAATTTTTCCTATT
TATAGTATACGCTGCCGAGCGCTACCATCATTATCATGATATCAACCTTT
GATGCTCTTTCATTTCTCTACCCCCTGTTTTTGCACCTCCTGTGTACCCT
ACTGAGAGAATATAGGACGGCCACACCTACCTACTTCCGGACTCCCCTAT
TAATAGAGTGGTTTCTATCTGAGCTGATATCCTCACGAAAATGGACACAT
CACGAAATACACCTTTTTTTGTTATAGCGCCTATTTATCTTACAAACCGC
ACGTTTCATTAATTAACTGAACCCTCGCGGTGTTTTTTTGTTAAGTGTTC
AATTCACGAATCGTGAGGTTAGTTTTTTGTTTTTGTTACGCGAAACGGCG
GGCATAACAACAGCGGCGCACTGGCTCTCTCACATTTCGTGAGAGAAAAA
GCGCTCGGTACGAACGGCTCTAGCCCGTTTTTAGGCTGGTTTTGGGTTAG
TATTTGAACGTGTACATGTTAACTCCATTCGGTGTTTCCAAGAAATCGTG
TGGTTAGTTTTCAGCTTTGAGCTTTCGAAAAGCGAGAGCGAAGTCCACAG
AGATCCTGCAGATCAAGAAGGCAGCCTTTTGCGTAGCCCCCGTCGATGTG
TCTCGGGTTGTTTTTTTTCGAAGCCCTGTCGGTTACTGCTCTGGTTCGGG
GTCAATCGTGCCTCGGATGACTGATTCTTAAAAAAAGATGGCAGATAAAT
CGTTGAGCGACAGAGCCGCCCAATCAAGCTGATCACAGGACTCTCTTGTC
ATGTGAGATGTTGGTCCACCGAGGCACTCGGTGAGGTGGAATGTCGGGCT
TGATGTACTGTATGAGAATATGCGATCATAGTCCACTGAGCGACTCAATC
AACTTGAATGCGGAACTGCCGGTGATGTGGGACGTTAGTGGCTCTTGAGG
TTGGATGGCGCAGGCTTGAAGTCACTCGAAACGTCAGCATTTGAGCCCCT
TGGCCAGGTTGAATGATTGAATGCAGACTTCACGTCGAAGAAGATGTTAG
CCACCGAGGCACGCTGACTGATTGGCTCAGAGATTACCATCGTAGATTAG
CATCCTATATGCATATTGGTGTTATCATAGTATTGTATTGTATGTGCCAA
GGTTTGTCCTAACCTCTTTGATGCAGCAGTTTGGAACATTTGTTTTCGAT
AATCTAGTCCCGAAGGTTGCCGCCCCCCTAAATAGCCTAAATAGCCGAGC
GCTGGAGCGAGTGGCACAGTGGATAGCGGGCACTAGATGCGCATGGGGAG
CTGCGCATCGCTGTGTTGCATAGGGATCTGTTGGGCTCTATGTACTTGCA
TTTCTGATTTGTTACCTACATATCATGGTATTATTTTGGTATCTCAACAC
CGGTCGGGCTGGAATTACCAACCCCGCTGAGCGTGATAATGAATGAATGG
ATTAATTAATAATTCACTGAATCAATCACTGAATCAATCCACTCAATCCA
ACCAATCAATCAACCAATCAATAAGTCAATCACTTGCTCAAACAATCAAC
CAATCAATCAATCAATCAATCATCCAATCAATCAATCAATCAATCAATCA
ATCAATAAAAAACGTCCATCAATCGACCATCCACCAATCAACCAGAAATT
TAATACATGCTTTAACCACCCAATCACCCAATCAACCGACCCACCAAATC
ATACCAAATCAACGGCTATACCAAGTATTTTCCCCTCACAGCTCACACCC
CACAGCTCACACCTGACACACCATACCCCTTGCCGCAGAACGGCCACATC
GGAGGCATCCACCGCTCGCCCTCGGCCAAGACACCGCTCCCCGACTGGGT
CAACGCCCTGACGGTACGGCAGGGCGAGTCAGAGGTGGTCGTGGGCGGCT
GCAAGGATGGAGGCATCTACGTTATGGAGTGGAAGGGGGGTATAGAGGCC
TCGGGGGGGGAGAAGCGGCTGGTCGTCGAGAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8079:5517..7952-

>mRNA_S-dermatodea_contig8079.16268.1 ID=mRNA_S-dermatodea_contig8079.16268.1|Name=mRNA_S-dermatodea_contig8079.16268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig8079:5517..7952- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGAATCTCAGTGCGGAGGGCAGAGACGATGTGCCGGAGTTCTTCTT
GTGTGCTGCACTGGAGGGCCACGAGGGGGATGTCAGGAGCTTGGCGGTCG
GGGCGCGTCACCTCTACAGCGGGGCGAGAGATAACGCGGTCATGGCCTGG
GAGTTGGACAAGGCGGCGAATCTCAGTGCGGAGGGCAGAGACGATGTGCC
GGAGTTCTTCTTGTGTGCTGCACTGGAGGGCCACGAGGGGGATGTCAGGA
GCTTGGCGGTCGGGGCGCGTCACCTCTACAGCGGGGCGAGAGATAACGCG
GTCATGGCCTGGGAGTTGGACAAGAACGGCCACATCGGAGGCATCCACCG
CTCGCCCTCGGCCAAGACACCGCTCCCCGACTGGGTCAACGCCCTGACGG
TACGGCAGGGCGAGTCAGAGGTGGTCGTGGGCGGCTGCAAGGATGGAGGC
ATCTACGTTATGGAGTGGAAGGGGGGTATAGAGGCCTCGGGGGGGGAGAA
GCGGCTGGTCGTCGAGAAGTGAAACGGCCACATCGGAGGCATCCACCGCT
CGCCCTCGGCCAAGACACCGCTCCCCGACTGGGTCAACGCCCTGACGGTA
CGGCAGGGCGAGTCAGAGGTGGTCGTGGGCGGCTGCAAGGATGGAGGCAT
CTACGTTATGGAGTGGAAGGGGGGTATAGAGGCCTCGGGGGGGGAGAAGC
GGCTGGTCGTCGAGAAGTGA
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