mRNA_S-dermatodea_contig80764.16267.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80764.16267.1
Unique NamemRNA_S-dermatodea_contig80764.16267.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.610e-19
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEK 141
            ANK LAALGAH+W PKT+GQKGVRILCFDGGGTRGVLT+ALLKH+EK
Sbjct: 1015 ANKCLAALGAHQWRPKTRGQKGVRILCFDGGGTRGVLTLALLKHLEK 1061          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A6H5KXR6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.630e-19
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEK 141
            ANK LAALGAH+W PK +GQKGVRILCFDGGGTRGVLT+ALLKHVEK
Sbjct:  902 ANKCLAALGAHQWRPKMRGQKGVRILCFDGGGTRGVLTLALLKHVEK 948          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A835YX58_9STRA (Calcium-independent phospholipase-like protein A2-gamma, C terminal part n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX58_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.990e-13
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   22 LGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHV 135
            LGA +WVPKT+GQKG+RILCFDGGGTRGVLT+A+LK +
Sbjct:    2 LGATEWVPKTRGQKGLRILCFDGGGTRGVLTIAMLKRI 39          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.870e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEK 141
            A+K+L+ LG H W P+  GQKG+RIL  DGGGTRGVLT+ALL+ V K
Sbjct: 1228 ASKLLSMLGVHHWTPRQPGQKGLRILSLDGGGTRGVLTIALLREVLK 1274          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: K0SV17_THAOC (PNPLA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV17_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 3.360e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHV 135
            ANK+LAALG ++W PK  GQ+G+R+LC DGGGTRG+  V  L H+
Sbjct:   70 ANKLLAALGQNQWRPKLPGQRGIRVLCLDGGGTRGIAAVTSLNHI 114          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A4D9DA09_9STRA (PNPLA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA09_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.490e-11
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    4 NKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEK 141
            +K+LAALG ++W P+  GQ+G+RIL FDGGGTRGVL+VALLK V K
Sbjct:  928 HKLLAALGHNEWRPRQPGQRGLRILSFDGGGTRGVLSVALLKQVMK 973          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A5J4YQ08_PORPP (Calcium-independent phospholipase A2-gamma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQ08_PORPP)

HSP 1 Score: 65.9 bits (159), Expect = 6.510e-11
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEKV 144
            A +VLAALG ++W P+  GQ+G+R+LC DGGGTR V++  +LKH++++
Sbjct:  813 ARRVLAALGVNEWRPRIPGQRGIRVLCIDGGGTRAVMSFEMLKHLKRI 860          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A0G4F2X6_VITBC (PNPLA domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F2X6_VITBC)

HSP 1 Score: 65.9 bits (159), Expect = 6.550e-11
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 ANKVLAALGAHK-WVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEKV 144
            ANK+LAA+G +  W P+  GQ+G+RILC DGGGTRGVLT+A+LK +  V
Sbjct: 1399 ANKLLAAMGCNNDWHPRVPGQRGLRILCLDGGGTRGVLTIAILKFIVAV 1447          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A7S0XJE8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJE8_9RHOD)

HSP 1 Score: 65.1 bits (157), Expect = 1.150e-10
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEKVGAC 153
            A ++L ALG + W P+  GQ+G+R+LC DGGGTR V++  +LKH++++  C
Sbjct:  338 ARRLLGALGVNTWKPRVSGQRGLRVLCIDGGGTRAVMSFEMLKHLKRITGC 388          
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Match: A0A7S2UTD1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UTD1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-10
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEKVGACRGGVE 168
            +N+VLAA+G ++WVPK  GQKG+RILC DGGGTRG+  +  L+ +       GG+E
Sbjct:  590 SNQVLAAIGHNQWVPKIPGQKGLRILCLDGGGTRGITAITTLRSIVNA---MGGIE 642          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80764.16267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE8_ECTSI2.610e-1987.23Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KXR6_9PHAE6.630e-1987.23PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YX58_9STRA5.990e-1378.95Calcium-independent phospholipase-like protein A2-... [more]
A0A6H5KSL4_9PHAE1.870e-1163.83PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
K0SV17_THAOC3.360e-1160.00PNPLA domain-containing protein n=1 Tax=Thalassios... [more]
A0A4D9DA09_9STRA3.490e-1167.39PNPLA domain-containing protein n=2 Tax=Monodopsid... [more]
A0A5J4YQ08_PORPP6.510e-1152.08Calcium-independent phospholipase A2-gamma n=1 Tax... [more]
A0A0G4F2X6_VITBC6.550e-1161.22PNPLA domain-containing protein n=1 Tax=Vitrella b... [more]
A0A7S0XJE8_9RHOD1.150e-1047.06Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S2UTD1_9STRA1.210e-1051.79Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80764contigS-dermatodea_contig80764:506..715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue7.5e-16
Seed eggNOG ortholog2880.D7FNE8
KEGG koko:K16815
EggNOG free text desc.phosphatidylethanolamine catabolic process
EggNOG OGsKOG4231@1,KOG4231@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.475112-CDS-S-dermatodea_contig80764:505..7151622925318.475112-CDS-S-dermatodea_contig80764:505..715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80764 506..715 -
1694079851.6430423-CDS-S-dermatodea_contig80764:505..7151694079851.6430423-CDS-S-dermatodea_contig80764:505..715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80764 506..715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80764.16267.1prot_S-dermatodea_contig80764.16267.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80764 506..715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80764.16267.1

>prot_S-dermatodea_contig80764.16267.1 ID=prot_S-dermatodea_contig80764.16267.1|Name=mRNA_S-dermatodea_contig80764.16267.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
ANKVLAALGAHKWVPKTQGQKGVRILCFDGGGTRGVLTVALLKHVEKVGA
CRGGVERVGAWEQGRAGQV*
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mRNA from alignment at S-dermatodea_contig80764:506..715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80764.16267.1 ID=mRNA_S-dermatodea_contig80764.16267.1|Name=mRNA_S-dermatodea_contig80764.16267.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig80764:506..715- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAACAAGGTCCTCGCTGCCCTAGGGGCGCACAAGTGGGTGCCTAAGAC CCAGGGACAGAAGGGCGTGAGGATCCTCTGCTTCGACGGGGGCGGCACGC GCGGTGTGCTCACGGTCGCCCTGCTCAAGCATGTCGAAAAGGTGGGTGCT TGTAGGGGCGGGGTGGAGCGCGTGGGCGCCTGGGAGCAGGGCAGGGCAGG GCAGGTGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80764:506..715-

>mRNA_S-dermatodea_contig80764.16267.1 ID=mRNA_S-dermatodea_contig80764.16267.1|Name=mRNA_S-dermatodea_contig80764.16267.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig80764:506..715- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAACAAGGTCCTCGCTGCCCTAGGGGCGCACAAGTGGGTGCCTAAGAC
CCAGGGACAGAAGGGCGTGAGGATCCTCTGCTTCGACGGGGGCGGCACGC
GCGGTGTGCTCACGGTCGCCCTGCTCAAGCATGTCGAAAAGGTGGGTGCT
TGTAGGGGCGGGGTGGAGCGCGTGGGCGCCTGGGAGCAGGGCAGGGCAGG
GCAGGTGTAAGCCAACAAGGTCCTCGCTGCCCTAGGGGCGCACAAGTGGG
TGCCTAAGACCCAGGGACAGAAGGGCGTGAGGATCCTCTGCTTCGACGGG
GGCGGCACGCGCGGTGTGCTCACGGTCGCCCTGCTCAAGCATGTCGAAAA
GGTGGGTGCTTGTAGGGGCGGGGTGGAGCGCGTGGGCGCCTGGGAGCAGG
GCAGGGCAGGGCAGGTGTAA
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