mRNA_S-dermatodea_contig8072.16262.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8072.16262.1
Unique NamemRNA_S-dermatodea_contig8072.16262.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.700e-22
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 QLREAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAANSSEGHPMA 174
            QLREAADLFRRAAD+GI DASYQLGRLYQQGLGIP +PVA+FENFLAAA+    HP A
Sbjct:  783 QLREAADLFRRAADSGIGDASYQLGRLYQQGLGIPLEPVASFENFLAAADGEVVHPTA 840
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-12
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 QLREAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAF 126
            QL EAA+LFRRAAD G +DASYQLGRLY+QGLG+P DP+AAF
Sbjct:  933 QLLEAAELFRRAADAGSADASYQLGRLYEQGLGMPVDPMAAF 974
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A849TQE2_9BACT (CASPASE_P20 domain-containing protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A849TQE2_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.360e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    7 REAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAANSSEG 162
            R+AA+ +R+AA+ G   A   LGRLY+QGLG+ +DP  AF  F  A+  SEG
Sbjct:  139 RQAAEWYRKAAEQGDKRAMIGLGRLYEQGLGLSKDPEQAFTWFRKASGLSEG 190
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A512DQV9_9PROT (PG_binding_1 domain-containing protein n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DQV9_9PROT)

HSP 1 Score: 48.5 bits (114), Expect = 4.810e-5
Identity = 25/47 (53.19%), Postives = 28/47 (59.57%), Query Frame = 1 
Query:   13 AADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAANS 153
            AA  F   A  G  DA Y LGR+Y+ GLG PRDPV A+  F  AA S
Sbjct:   45 AARQFEEVAREGDPDAQYWLGRIYEGGLGRPRDPVTAYGWFERAAES 91
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A4R5UIA3_9HYPH (Sel1 repeat family protein n=1 Tax=Rhizobium deserti TaxID=2547961 RepID=A0A4R5UIA3_9HYPH)

HSP 1 Score: 48.5 bits (114), Expect = 5.700e-5
Identity = 19/48 (39.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 LREAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAA 147
            L+  A  FR +A+ G + A+++LG +Y+ G+G+P+DP+ AF  ++ AA
Sbjct:   47 LKTTARYFRVSAEKGNAVAAFKLGEIYENGIGLPKDPIQAFTWYMRAA 94
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A5D0S2H3_9RHOB (Peptidase C14, caspase catalytic subunit p20 n=1 Tax=Oceaniovalibus sp. ACAM 378 TaxID=2599923 RepID=A0A5D0S2H3_9RHOB)

HSP 1 Score: 48.9 bits (115), Expect = 5.790e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   10 EAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAA 147
            +AA L +RAAD G ++A ++LG+LY++GLG+  D   A E + AAA
Sbjct:  313 DAAGLLQRAADGGSAEAMFELGQLYEKGLGVIMDDARALELYRAAA 358
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A6P2BH13_9GAMM (Sel1 repeat family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6P2BH13_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 7.410e-5
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 QLREAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAA 147
            ++ EA  LF  A ++G+  ASY LGR+Y++GLG+P DP  A + +   A
Sbjct:  161 RIDEALKLFSDALEHGLMLASYYLGRIYREGLGVPPDPTLALDFYTLGA 209
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BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Match: A0A1V6IVZ2_9DELT (Localization factor PodJL n=3 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1V6IVZ2_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 7.940e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   31 RAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAANSSEGHPMA 174
            +AA+ G++DA Y LG +Y++G G+PRD   A + + AAA   +GHP A
Sbjct:  228 KAAEQGLADAQYHLGVIYEEGSGVPRDNEKAIKWYRAAAE--QGHPEA 273
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8072.16262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G201_ECTSI6.700e-2281.03Sel1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CC33_9STRA1.480e-1278.57MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A849TQE2_9BACT1.360e-650.00CASPASE_P20 domain-containing protein n=1 Tax=Nitr... [more]
A0A512DQV9_9PROT4.810e-553.19PG_binding_1 domain-containing protein n=1 Tax=Ske... [more]
A0A4R5UIA3_9HYPH5.700e-539.58Sel1 repeat family protein n=1 Tax=Rhizobium deser... [more]
A0A5D0S2H3_9RHOB5.790e-547.83Peptidase C14, caspase catalytic subunit p20 n=1 T... [more]
A0A6P2BH13_9GAMM7.410e-542.86Sel1 repeat family protein n=1 Tax=Gammaproteobact... [more]
A0A1V6IVZ2_9DELT7.940e-545.83Localization factor PodJL n=3 Tax=unclassified Del... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8072contigS-dermatodea_contig8072:129..335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue6e-18
Seed eggNOG ortholog2880.D7G201
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.1313457-CDS-S-dermatodea_contig8072:128..3351622925318.1313457-CDS-S-dermatodea_contig8072:128..335Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8072 129..335 +
1694079851.4304118-CDS-S-dermatodea_contig8072:128..3351694079851.4304118-CDS-S-dermatodea_contig8072:128..335Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8072 129..335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8072.16262.1prot_S-dermatodea_contig8072.16262.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8072 129..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8072.16262.1

>prot_S-dermatodea_contig8072.16262.1 ID=prot_S-dermatodea_contig8072.16262.1|Name=mRNA_S-dermatodea_contig8072.16262.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
QLREAADLFRRAADNGISDASYQLGRLYQQGLGIPRDPVAAFENFLAAAN
SSEGHPMAGEAGSRYSGKG
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mRNA from alignment at S-dermatodea_contig8072:129..335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8072.16262.1 ID=mRNA_S-dermatodea_contig8072.16262.1|Name=mRNA_S-dermatodea_contig8072.16262.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at S-dermatodea_contig8072:129..335+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACTACGAGAAGCGGCGGATTTGTTCAGGCGGGCAGCGGACAATGGCAT
AAGCGACGCCTCCTACCAGCTTGGGAGGCTATACCAGCAAGGGTTGGGTA
TACCTCGTGATCCGGTGGCGGCTTTCGAAAATTTCCTGGCCGCGGCTAAC
AGTTCAGAGGGCCACCCCATGGCAGGTGAAGCGGGTTCGCGATATAGTGG
AAAGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8072:129..335+

>mRNA_S-dermatodea_contig8072.16262.1 ID=mRNA_S-dermatodea_contig8072.16262.1|Name=mRNA_S-dermatodea_contig8072.16262.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig8072:129..335+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACTACGAGAAGCGGCGGATTTGTTCAGGCGGGCAGCGGACAATGGCAT
AAGCGACGCCTCCTACCAGCTTGGGAGGCTATACCAGCAAGGGTTGGGTA
TACCTCGTGATCCGGTGGCGGCTTTCGAAAATTTCCTGGCCGCGGCTAAC
AGTTCAGAGGGCCACCCCATGGCAGGTGAAGCGGGTTCGCGATATAGTGG
AAAGGGGCAACTACGAGAAGCGGCGGATTTGTTCAGGCGGGCAGCGGACA
ATGGCATAAGCGACGCCTCCTACCAGCTTGGGAGGCTATACCAGCAAGGG
TTGGGTATACCTCGTGATCCGGTGGCGGCTTTCGAAAATTTCCTGGCCGC
GGCTAACAGTTCAGAGGGCCACCCCATGGCAGGTGAAGCGGGTTCGCGAT
ATAGTGGAAAGGGG
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