prot_S-dermatodea_contig807.16255.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig807.16255.1
Unique Nameprot_S-dermatodea_contig807.16255.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length161
Homology
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BLAST of mRNA_S-dermatodea_contig807.16255.1 vs. uniprot
Match: A0A6H5JNA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.100e-37
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = 0 
Query:    1 PLTAAQRREAAQKTAFERKKPNPNAEQKLAALRALVNDAEEALGKRKEHPFRRWKVGATVYALKNHSKFLAKELLLPTGKGTDASNCHDEEAEEEEFSDDDKERLAAIEAKKRGKREKLAEQGVLPHEIDAIFDEDEGKRLRRKAKRDA-NAAAK 154
            P+T AQ RE A + A   K+PNPN +QKL  +R +V DA+EA+  R  HPF RWK G TVYALKN ++ L KE +L   KGTDASNCHDEEA+EEEFSDD++E LA   AK++ KR+ LA +GVLP EIDAI   ++  R ++KAKRDA NAAAK
Sbjct:  392 PMTGAQIREEAMRRA-RAKEPNPNNDQKLEEIRKVVADAQEAMLTRDLHPFSRWKTGTTVYALKN-AQMLQKEKILHD-KGTDASNCHDEEADEEEFSDDEQEMLAIARAKEKKKRDDLAMKGVLPDEIDAIIAGEQEMRRQKKAKRDASNAAAK 543
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig807.16255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNA9_9PHAE3.100e-3758.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42
NoneNo IPR availablePANTHERPTHR31633:SF1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 55..156
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 52..111
e-value: 6.2E-9
score: 35.8
IPR040309H/ACA ribonucleoprotein complex non-core subunit Naf1PANTHERPTHR31633FAMILY NOT NAMEDcoord: 55..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig807contigS-dermatodea_contig807:8470..9949 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig807.16255.1mRNA_S-dermatodea_contig807.16255.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig807 8469..9949 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig807.16255.1 ID=prot_S-dermatodea_contig807.16255.1|Name=mRNA_S-dermatodea_contig807.16255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
PLTAAQRREAAQKTAFERKKPNPNAEQKLAALRALVNDAEEALGKRKEHP
FRRWKVGATVYALKNHSKFLAKELLLPTGKGTDASNCHDEEAEEEEFSDD
DKERLAAIEAKKRGKREKLAEQGVLPHEIDAIFDEDEGKRLRRKAKRDAN
AAAKGGGRGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR040309Naf1