mRNA_S-dermatodea_contig80643.16249.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80643.16249.1
Unique NamemRNA_S-dermatodea_contig80643.16249.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.820e-21
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEV 141
            VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAE+IYREYW+EV
Sbjct:  196 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAESIYREYWREV 240
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.830e-21
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEV 141
            VITDMGVCPFSVDASRAGLPVGQ+RYPVTRETTAE+IYREYW+EV
Sbjct:  258 VITDMGVCPFSVDASRAGLPVGQIRYPVTRETTAESIYREYWREV 302
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A7S0Z441_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z441_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 7.900e-14
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVS 144
            +I+DMG+CPFS  A +AGLPVG V YPV+R TT E  Y  YWKEV+
Sbjct:   66 IISDMGICPFSQSADKAGLPVGGVHYPVSRVTTCEECYEVYWKEVN 111
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A7S2Y0U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0U9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.540e-14
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVSW 147
            VI  +GVCPF+VD  +AGLP+G V YP+TR T  E IYREYW+EV +
Sbjct:    1 VIGHLGVCPFTVDHKKAGLPLGDVHYPITRATVPEEIYREYWREVCY 47
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A835ZCU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.150e-13
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVSW 147
            +I  MG+CPF+VDA+RAGLP+G + YPV++  TAE +YR+YW +V +
Sbjct:  175 IIAGMGICPFAVDANRAGLPIGGIHYPVSKSDTAEFVYRDYWNQVEY 221
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 2.350e-12
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVS 144
            +I+DMGVCPFS +A +AGLP+G V Y ++R+T  E IY EYWKEVS
Sbjct:  228 IISDMGVCPFSRNADKAGLPLGPVHYSISRQTRPEDIYSEYWKEVS 273
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A7S0TPK1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPK1_HEMAN)

HSP 1 Score: 67.0 bits (162), Expect = 6.300e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVSW 147
            +I+DMG+CPFS  A +AGLPVG V YPV+R T+ E  Y  YW+EV++
Sbjct:   79 IISDMGICPFSQSADKAGLPVGGVHYPVSRVTSCEECYEVYWREVNY 125
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: L1JRB3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRB3_GUITC)

HSP 1 Score: 67.4 bits (163), Expect = 7.250e-12
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVS 144
            +I+DMGVCPFS  A +AGLP+G V Y ++R++  E IY EYWKEVS
Sbjct:  128 IISDMGVCPFSRSADKAGLPLGPVHYSISRQSRPEEIYSEYWKEVS 173
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A8J2S710_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S710_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.180e-11
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVSWFD 153
            +++D G+CPFS+ A RAGLP+G VRY VTR    E  ++ +WKEV W +
Sbjct:  197 IVSDAGICPFSLSADRAGLPLGDVRYDVTRADDTETCFQWFWKEVQWLE 245
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BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Match: A0A4D9D9D0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9D0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.590e-11
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    7 VITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVS 144
            +I D+GVCPF+V+A +AGLP G +RY + R  + E IYR+YW+EV+
Sbjct:  260 IIADLGVCPFTVNAGKAGLPQGAIRYEINRSMSPEEIYRKYWQEVA 305
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80643.16249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G7N7_ECTSI1.820e-2195.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Q2_9PHAE2.830e-2193.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0Z441_9CRYP7.900e-1463.04Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2Y0U9_9STRA8.540e-1461.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZCU6_9STRA5.150e-1355.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NF62_9CRYP2.350e-1263.04Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0TPK1_HEMAN6.300e-1257.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JRB3_GUITC7.250e-1260.87Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A8J2S710_9STRA2.180e-1151.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9D9D0_9STRA5.590e-1154.35Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80643contigS-dermatodea_contig80643:124..279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog2880.D7G7N7
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2RXZW@2759,COG3310@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.2817898-UTR-S-dermatodea_contig80643:123..1411622925317.2817898-UTR-S-dermatodea_contig80643:123..141Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80643 124..141 +
1694079850.856526-UTR-S-dermatodea_contig80643:123..1411694079850.856526-UTR-S-dermatodea_contig80643:123..141Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80643 124..141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.294014-CDS-S-dermatodea_contig80643:141..2791622925317.294014-CDS-S-dermatodea_contig80643:141..279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80643 142..279 +
1694079850.8703759-CDS-S-dermatodea_contig80643:141..2791694079850.8703759-CDS-S-dermatodea_contig80643:141..279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80643 142..279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80643.16249.1prot_S-dermatodea_contig80643.16249.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80643 142..279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80643.16249.1

>prot_S-dermatodea_contig80643.16249.1 ID=prot_S-dermatodea_contig80643.16249.1|Name=mRNA_S-dermatodea_contig80643.16249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
MGVCPFSVDASRAGLPVGQVRYPVTRETTAEAIYREYWKEVSWFD*
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mRNA from alignment at S-dermatodea_contig80643:124..279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80643.16249.1 ID=mRNA_S-dermatodea_contig80643.16249.1|Name=mRNA_S-dermatodea_contig80643.16249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig80643:124..279+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCACAGTGATAACGGACATGGGAGTCTGCCCCTTTAGCGTCGACGCGTC
GCGCGCCGGCCTCCCCGTGGGGCAAGTCCGATACCCAGTCACGCGCGAGA
CAACTGCCGAGGCGATTTACAGAGAGTACTGGAAAGAGGTGAGTTGGTTT
GATTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80643:124..279+

>mRNA_S-dermatodea_contig80643.16249.1 ID=mRNA_S-dermatodea_contig80643.16249.1|Name=mRNA_S-dermatodea_contig80643.16249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig80643:124..279+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGTCTGCCCCTTTAGCGTCGACGCGTCGCGCGCCGGCCTCCCCGT
GGGGCAAGTCCGATACCCAGTCACGCGCGAGACAACTGCCGAGGCGATTT
ACAGAGAGTACTGGAAAGAGGTGAGTTGGTTTGATTGAATGGGAGTCTGC
CCCTTTAGCGTCGACGCGTCGCGCGCCGGCCTCCCCGTGGGGCAAGTCCG
ATACCCAGTCACGCGCGAGACAACTGCCGAGGCGATTTACAGAGAGTACT
GGAAAGAGGTGAGTTGGTTTGATTGA
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