mRNA_S-dermatodea_contig8058.16243.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 207 bits (526), Expect = 5.040e-59 Identity = 94/150 (62.67%), Postives = 121/150 (80.67%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVPDKESDDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
V++EV S FYLC+AFEYA+P + + SCEQCV+IDGAEG+DC+L GATLASLP+ EGYWRSS +SL +H CVH ACVGAT++SS+ DYC GY+GPYCTVCT G+G+G GNTCHSC+ T +R LI AG++F++ +LL A+V+LV
Sbjct: 843 VDVEVYSAFYLCQAFEYAMPVDDENAAFSCEQCVNIDGAEGLDCELPGATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTCHSCEGTKSRLLIAAGSLFALVILLLVILAVVYLV 992
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 204 bits (519), Expect = 4.400e-58 Identity = 95/151 (62.91%), Postives = 122/151 (80.79%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVP-DKESDDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
VELEV S FYLC+AFEYAVP D + D +SCEQCV+IDGAEGVDC+L GATLASLP+ EGYWRS +S V +C+H+++C GAT+VS+++DYC +GY+GPYC C AGYG G+GNTCH CD+T +R+LI AG++F++ LL A+VFLV
Sbjct: 802 VELEVESAFYLCQAFEYAVPVDGDDDTAVSCEQCVAIDGAEGVDCELPGATLASLPVREGYWRSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTCHPCDDTRSRWLILAGSLFTLVTLLVLGLAIVFLV 952
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 203 bits (517), Expect = 7.490e-58 Identity = 96/151 (63.58%), Postives = 119/151 (78.81%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVP-DKESDDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
+ELEV S FYLC+AFEYAVP D + D +SCEQCV IDGAEGVDC+L GATLASLP+ EGYWRS +S V +C+H+++C GAT VS+SDDYC +GY+GPYC C AGYG G+GNTCHSCD T R+LI AG++F++ LL A+VFL+
Sbjct: 353 LELEVESAFYLCQAFEYAVPVDGDDDTAVSCEQCVVIDGAEGVDCELPGATLASLPVREGYWRSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTCHSCDGTRFRWLIFAGSLFTLVTLLVLGLAVVFLI 503
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 197 bits (500), Expect = 1.600e-55 Identity = 97/150 (64.67%), Postives = 116/150 (77.33%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVPDKESDDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
V LEV + FYLC AFEYA+PD E ++CEQCV +DGAEGVDC+L GAT SLP+ G+WRSS +SLV+H C+HSDACVGATE+ +SDDYC GY+GPYC VC GYGKGVGNTCHSC + AR LI AG++F + XXXXA VFL+
Sbjct: 878 VGLEVETAFYLCEAFEYAMPDGEEQ--VTCEQCVLLDGAEGVDCELPGATQTSLPVRAGHWRSSEESLVIHGCLHSDACVGATEIVTSDDYCDGGYEGPYCAVCAEGYGKGVGNTCHSCTGSKARLLIAAGSVFFLVAXXXXXXAAVFLI 1025
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 188 bits (477), Expect = 1.990e-52 Identity = 84/150 (56.00%), Postives = 112/150 (74.67%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVPDKESDDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
V++EV S FYLC+AFEYA+P D SCEQC S++GAEG+DC++ GATLASLP+ EGYWRS +SL +H C S ACVGA ++SS+ DYC GY+GPYC VC G+G+G GN+CHSC+ T +R LI AG++F++ +LL + +LV
Sbjct: 836 VDVEVYSAFYLCQAFEYAMPVDGEDTTFSCEQCASVNGAEGLDCEIPGATLASLPVREGYWRSGGESLTIHQCSPSSACVGAAQISSAQDYCGEGYQGPYCAVCAEGFGRGAGNSCHSCEGTKSRLLIAAGSLFALVILLLIILTVAYLV 985
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 176 bits (447), Expect = 2.140e-48 Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVP-DKESDD--------GISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
VELEV S FYLC+AFEYA+P D E + C QC ++DGAEG+DC+ GATLAS+P+ EGYWRSS +SLVVH C+HSDAC GAT++SSSDDYCK Y+GPYC VC G +G +TCH C +R L+ AG +F + ++L A+VFL+
Sbjct: 491 VELEVESAFYLCQAFEYAMPVDSEXXXXXXXPDAASVVCLQCANLDGAEGLDCESPGATLASMPVREGYWRSSQESLVVHGCLHSDACAGATQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTCHRCSGIKSRLLMFAGIVFGVTIVLFLGVAIVFLI 649
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.400e-47 Identity = 86/152 (56.58%), Postives = 110/152 (72.37%), Query Frame = 1
Query: 1 VELEVASTFYLCRAFEYAVP-DKESDDGIS-CEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSIFLLLXXXXALVFLV 450
VELEV S FYLC+AFEYA+P D + DD C QC + DGAEG+DC+ GATLASLP+ EGYWRSS +SLVVH C++SDAC G T++SSSDDYCK Y+GPYC VC G +G +TC+ C +R L+ AG +F + ++L A+VFL+
Sbjct: 843 VELEVKSEFYLCQAFEYAMPVDGDDDDNDPVCLQCANFDGAEGLDCESPGATLASLPVREGYWRSSQESLVVHGCLNSDACAGGTQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTCYRCSGIKSRLLMFAGIVFGVTIVLFLGLAIVFLI 994
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI) HSP 1 Score: 107 bits (266), Expect = 4.490e-24 Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1
Query: 13 VASTFYLCRAFEYAVPDKESDDGISCEQCVSID-GAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGAT---EVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNT 366
+ ++F C A +Y V + S C C + EG+ CD G L +LPL EGYWRS+ S + C + DAC+G+ +SS +DYC GY GPYC VC GY GV +TCHSCD +
Sbjct: 415 INASFVYCNAGQYWVASETS-----CMMCADVALNPEGLSCDSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDGS 531
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: A0A835YZ05_9STRA (UCH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ05_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 8.360e-21 Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 73 DDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSI 408
D C+ C S G+ C GAT+A+LPL GYWR + ++ C +SDAC+G+ +S DDYC AGY+GPYCTVC+A Y VG C C TS ++A A +I
Sbjct: 434 DGTFGCKACDST----GLACTGIGATIATLPLDSGYWRETLMQELIRKCWNSDACIGSAAAASVDDYCAAGYEGPYCTVCSADYAALVGYRCVECTTTSVAIALSAIAAIAI 541
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Match: A0A835YVC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC3_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.090e-20 Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 73 DDGISCEQCVSIDGAEGVDCDLAGATLASLPLVEGYWRSSNQSLVVHSCVHSDACVGATEVSSSDDYCKAGYKGPYCTVCTAGYGKGVGNTCHSCDNTSARFLITAGAIFSI 408
D C+ C S G+ C GAT+A+LPL GYWR + ++ C +SDAC+G +S DDYC AGY+GPYCTVC+A Y VG C C TS ++A A +I
Sbjct: 186 DGTFGCKACDST----GLACTGIGATIATLPLDSGYWRETLMQELIRKCWNSDACIGGAAAASVDDYCAAGYEGPYCTVCSADYAALVGYRCVECTTTSVAIALSAIAAIAI 293 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8058.16243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8058.16243.1 >prot_S-dermatodea_contig8058.16243.1 ID=prot_S-dermatodea_contig8058.16243.1|Name=mRNA_S-dermatodea_contig8058.16243.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp VELEVASTFYLCRAFEYAVPDKESDDGISCEQCVSIDGAEGVDCDLAGATback to top mRNA from alignment at S-dermatodea_contig8058:6647..8024+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8058.16243.1 ID=mRNA_S-dermatodea_contig8058.16243.1|Name=mRNA_S-dermatodea_contig8058.16243.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1378bp|location=Sequence derived from alignment at S-dermatodea_contig8058:6647..8024+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8058:6647..8024+ >mRNA_S-dermatodea_contig8058.16243.1 ID=mRNA_S-dermatodea_contig8058.16243.1|Name=mRNA_S-dermatodea_contig8058.16243.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig8058:6647..8024+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |