mRNA_S-dermatodea_contig80525.16236.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80525.16236.1
Unique NamemRNA_S-dermatodea_contig80525.16236.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80525.16236.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.910e-25
Identity = 82/90 (91.11%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 VRGITSLSALSEGNEEEGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXXVEAA-IAEGAGYLGMTDPEALLK 267
            VRGITSLSALSEGNEE+GGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXX    VEAA IA G+GYLGMTDPEALLK
Sbjct:    5 VRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLK 94
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BLAST of mRNA_S-dermatodea_contig80525.16236.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.880e-20
Identity = 75/89 (84.27%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 VRGITSLSALSEGNEEEGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXXVEAAIAEGAGYLGMTDPEALLK 267
            V G+TSLSA+SEG EEEGGGDH  REAA GSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXX   +EAAIA G+ YLGMTDPEALLK
Sbjct:   73 VPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLK 161
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BLAST of mRNA_S-dermatodea_contig80525.16236.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.940e-19
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 VRGITSLSALSEGNEEEGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXXVEAAIAEGAGYLGMTDPEALLK 267
            VRG+T LSA+SEG+EEEGGGDH  REAA   PAADEIRAVQ                          +EAAIA GA YLGMTDPEALLK
Sbjct:    5 VRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLK 93
[Close]
BLAST of mRNA_S-dermatodea_contig80525.16236.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 7.420e-18
Identity = 50/86 (58.14%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   10 ITSLSALSEGNEEEGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXXVEAAIAEGAGYLGMTDPEALLK 267
            +TSLSA+SEG+EEEGGGDHD REAA   PAADEIRAVQ         X                +EAAIA G+ YLGMTDPEALLK
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLK 86
[Close]
BLAST of mRNA_S-dermatodea_contig80525.16236.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.010e-17
Identity = 70/93 (75.27%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   10 ITSLSALSEGNEEEGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXXXXV-------EAAIAEGAGYLGMTDPEALLK 267
            +TS SA+SEG+EEEGGGDHD REAA GSPAADEIRAVQXXXXXXXXXXXXXXXXXXX       V       EAAIA G+ YLGMTDPEALLK
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLK 93
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80525.16236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3Q8_ECTSI2.910e-2591.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI3.880e-2084.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI1.940e-1957.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI7.420e-1858.14Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI4.010e-1775.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80525contigS-dermatodea_contig80525:522..788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.4789114-CDS-S-dermatodea_contig80525:521..7881622925316.4789114-CDS-S-dermatodea_contig80525:521..788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80525 522..788 +
1694079850.3593807-CDS-S-dermatodea_contig80525:521..7881694079850.3593807-CDS-S-dermatodea_contig80525:521..788Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80525 522..788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80525.16236.1prot_S-dermatodea_contig80525.16236.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80525 522..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80525.16236.1

>prot_S-dermatodea_contig80525.16236.1 ID=prot_S-dermatodea_contig80525.16236.1|Name=mRNA_S-dermatodea_contig80525.16236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
VRGITSLSALSEGNEEEGGGDHDTREAAGGSPAADEIRAVQDEIRGVERK
IEHVERETEEVAQKIDDVEAAIAEGAGYLGMTDPEALLK
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mRNA from alignment at S-dermatodea_contig80525:522..788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80525.16236.1 ID=mRNA_S-dermatodea_contig80525.16236.1|Name=mRNA_S-dermatodea_contig80525.16236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at S-dermatodea_contig80525:522..788+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGAGGGATCACGAGCTTGAGCGCGCTGAGCGAGGGCAACGAGGAGGA
GGGGGGCGGCGATCATGATACGCGAGAAGCGGCCGGCGGCAGTCCGGCGG
CGGACGAGATCCGTGCGGTCCAGGATGAGATCCGCGGTGTCGAACGCAAG
ATCGAGCATGTCGAGAGGGAGACGGAAGAGGTAGCCCAGAAGATTGATGA
TGTTGAGGCTGCTATTGCTGAGGGCGCCGGGTACCTCGGAATGACCGACC
CCGAAGCCCTGTTGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80525:522..788+

>mRNA_S-dermatodea_contig80525.16236.1 ID=mRNA_S-dermatodea_contig80525.16236.1|Name=mRNA_S-dermatodea_contig80525.16236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig80525:522..788+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCGAGGGATCACGAGCTTGAGCGCGCTGAGCGAGGGCAACGAGGAGGA
GGGGGGCGGCGATCATGATACGCGAGAAGCGGCCGGCGGCAGTCCGGCGG
CGGACGAGATCCGTGCGGTCCAGGATGAGATCCGCGGTGTCGAACGCAAG
ATCGAGCATGTCGAGAGGGAGACGGAAGAGGTAGCCCAGAAGATTGATGA
TGTTGAGGCTGCTATTGCTGAGGGCGCCGGGTACCTCGGAATGACCGACC
CCGAAGCCCTGTTGAAGGTGCGAGGGATCACGAGCTTGAGCGCGCTGAGC
GAGGGCAACGAGGAGGAGGGGGGCGGCGATCATGATACGCGAGAAGCGGC
CGGCGGCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGATCC
GCGGTGTCGAACGCAAGATCGAGCATGTCGAGAGGGAGACGGAAGAGGTA
GCCCAGAAGATTGATGATGTTGAGGCTGCTATTGCTGAGGGCGCCGGGTA
CCTCGGAATGACCGACCCCGAAGCCCTGTTGAAG
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