mRNA_S-dermatodea_contig805.16233.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig805.16233.1
Unique NamemRNA_S-dermatodea_contig805.16233.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: A0A6H5K449_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K449_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.210e-19
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   37 EDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMA 246
            +++G+ GP+GLLATP+VK+ LLL  +   V IG+ EVYPL+ LST DVGGL W T  IG+VL ++G+LMA
Sbjct:   42 DELGILGPSGLLATPHVKMVLLLTCIISTVSIGFDEVYPLFALSTPDVGGLGWSTVEIGKVLVMTGVLMA 111          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: D8LJX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.730e-19
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   34 EEDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMA 246
            EE++G++G +GLL TP+VK  L LG V Q ++IG++E YPL+ LST DVGGL W T +IG+VL ++GL MA
Sbjct:  158 EEEIGIFGRHGLLVTPHVKTLLTLGCVVQALQIGFEEAYPLFALSTPDVGGLGWNTFQIGKVLVMTGLFMA 228          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: D7G0M0_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.090e-18
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   34 EEDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMAV 249
            +E+ GL+GP GLLA P+VKL L LG +   + IG+ EVYPL+ LST  VGGL W T +IG+V+ V+GLL+AV
Sbjct:  322 DEEQGLFGPGGLLARPHVKLVLFLGCIIATLAIGFDEVYPLYALSTPSVGGLGWNTVQIGQVMVVAGLLLAV 393          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.060e-18
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   34 EEDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMA 246
            EE++G++G +GLLATP+VK  L LG V   ++IG+ E YPL+ LST DVGGL W T +IG+VL ++GL MA
Sbjct:  326 EEEIGIFGRHGLLATPHVKTLLTLGCVVMALQIGFDEAYPLFALSTPDVGGLGWNTLQIGKVLVMTGLFMA 396          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: D8LJK9_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.770e-17
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 GSHGVSTPVVSE-EDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMAV 249
            G H    PV S  E+ GL GP GLL+ P VK  L L  V Q +  G++EV+PLW LST  VGGL+WGT  IG+VL +SG +M V
Sbjct:  252 GLHAREPPVTSNREEQGLCGPGGLLSVPRVKPLLFLVCVVQSLLAGFEEVFPLWALSTVGVGGLDWGTMEIGKVLFLSGCIMVV 335          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: A0A6H5JRQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.410e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   46 GLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMA 246
            GL GP+GLLATP+VK+ L L  +   V IG+ EVYPL+ LST DVGGL W T  IG+VL ++G+LMA
Sbjct:  380 GLLGPSGLLATPHVKMVLFLTCIISTVSIGFDEVYPLFALSTPDVGGLGWSTVEIGKVLVMTGVLMA 446          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: A0A6H5JH24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH24_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.530e-16
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   37 EDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMAV 249
            ++  L+GP GLLA  +VKL L LG ++  + IG+ EVYPL+ LST  VGGL W T +IG+VL ++GL++AV
Sbjct:  153 DEQSLFGPGGLLARRHVKLVLFLGCISATLAIGFDEVYPLYALSTPSVGGLGWNTVQIGQVLVMAGLMLAV 223          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: A0A6H5JAX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.040e-15
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   22 PVVSE-EDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMAV 249
            PV S  E  G  GP GLL+ P VK  L L  V Q +  G++EV+PLW LST  VGGL+WGT  IG+VL VSG +M V
Sbjct:  296 PVTSNREQQGHCGPGGLLSVPRVKPLLFLVCVVQSLLAGFEEVFPLWALSTVGVGGLDWGTMEIGKVLFVSGCIMVV 372          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: D8LET0_ECTSI (Major facilitator superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.580e-15
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   22 PVV-SEEDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMAV 249
            PV+ + E+  L GP GLL+ P +K  L L  V Q +  G++EV+PLW LST  VGGL WGT  IG+VL ++G +M V
Sbjct:   23 PVIRNREEQRLCGPGGLLSVPRIKPLLFLVCVVQSLLTGFEEVFPLWALSTVGVGGLGWGTMEIGKVLFMTGCIMVV 99          
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Match: D8LP17_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP17_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.930e-10
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   13 VSTPVVSEE-DVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVYPLWVLSTEDVGGLNWGTKRIGE 216
            V  P  +EE + G+    GLL+TP VK+ + +  + Q   IG+ EVYPLW +ST DVGGL W   +IG+
Sbjct:  338 VPGPSRAEEIEPGMCEAGGLLSTPNVKMVIFIAAMAQMSSIGFDEVYPLWAVSTTDVGGLGWAPVQIGK 406          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig805.16233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K449_9PHAE8.210e-1957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJX7_ECTSI8.730e-1956.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0M0_ECTSI1.090e-1856.94MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5T8_9PHAE2.060e-1856.34MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJK9_ECTSI1.770e-1752.38MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRQ3_9PHAE3.410e-1759.70MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JH24_9PHAE6.530e-1652.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAX4_9PHAE1.040e-1554.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET0_ECTSI3.580e-1549.35Major facilitator superfamily n=1 Tax=Ectocarpus s... [more]
D8LP17_ECTSI1.930e-1044.93MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig805contigS-dermatodea_contig805:17339..18205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D7G0M0
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size250
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig805.16233.1prot_S-dermatodea_contig805.16233.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig805 17340..18205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.2785487-CDS-S-dermatodea_contig805:17339..173721622925316.2785487-CDS-S-dermatodea_contig805:17339..17372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig805 17340..17372 -
1694079850.2240818-CDS-S-dermatodea_contig805:17339..173721694079850.2240818-CDS-S-dermatodea_contig805:17339..17372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig805 17340..17372 -
1622925316.2890174-CDS-S-dermatodea_contig805:17733..178291622925316.2890174-CDS-S-dermatodea_contig805:17733..17829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig805 17734..17829 -
1694079850.2365038-CDS-S-dermatodea_contig805:17733..178291694079850.2365038-CDS-S-dermatodea_contig805:17733..17829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig805 17734..17829 -
1622925316.299434-CDS-S-dermatodea_contig805:18085..182051622925316.299434-CDS-S-dermatodea_contig805:18085..18205Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig805 18086..18205 -
1694079850.2448761-CDS-S-dermatodea_contig805:18085..182051694079850.2448761-CDS-S-dermatodea_contig805:18085..18205Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig805 18086..18205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig805.16233.1

>prot_S-dermatodea_contig805.16233.1 ID=prot_S-dermatodea_contig805.16233.1|Name=mRNA_S-dermatodea_contig805.16233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
GSHGVSTPVVSEEDVGLWGPNGLLATPYVKLFLLLGFVTQYVRIGYQEVY
PLWVLSTEDVGGLNWGTKRIGEVLGVSGLLMAV
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mRNA from alignment at S-dermatodea_contig805:17339..18205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig805.16233.1 ID=mRNA_S-dermatodea_contig805.16233.1|Name=mRNA_S-dermatodea_contig805.16233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at S-dermatodea_contig805:17339..18205- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAGCCATGGTGTCTCGACACCCGTTGTTTCTGAAGAGGACGTGGGGCT GTGGGGGCCGAACGGGTTGTTGGCCACCCCCTACGTCAAGCTCTTCCTCT TGCTTGGGTTTGTGACACAGGTGAATACAGGACCGGGAAGTACGAGGTTC TCGTGCTGCTGCCGGGCACCGTTCTTTTGAAAGGCGATCGTCGGTTATGT TTGGGTGGATACGGCCCGATCTATGACTACAGGTCTCAAAGTCATGTTGA GAGGAATCGTGGCCTTTTGTCGAATGATGTGCTACGTACATATCATCTAC TACTTGTATCCGATGGTACACAAACGCCTCCTAACCCACCGACCGCCCTT GCGTGATCCGACTGCTTCACAACCAGTACGTGAGGATCGGCTACCAAGAA GTGTACCCTCTGTGGGTGCTGAGCACTGAAGATGTAGGAGGGCTAAATTG GGGCACCAAGCGGATAGGGGAGGTACAGTGGTGTCTTGAGGAGTTAGTAA TCACATGTCACCCTTGTGTCTGGGTGTAATCGTCCATAGGTAGTGGCCAC ACGAAGATGTAGAGCCTTGTTTCATGCCGTGCGAGGAGAAGCGTTTTGGG GGATCAAGGCCCACGTGCCCTTCCCCGCTTGTTCAGGTACCTCCGTGCAG TACAACGCTGTCTTTGTTGTGGCGAGGCCGTCAAAATTCTGGCGTAAGGC GCTGTTCGTCGCAGCCTCTTCATTTCACCTTTTGTGCGAATACCATGAGG CGCTACACTCGAATGTTGGAACAAACCGCATCGCGTTTTTTTTTCATCCC TCACTGCTTCGTGTGTGTGCGCCGTGCGTTCAGGTGTTGGGTGTGTCAGG CTTACTGATGGCTGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig805:17339..18205-

>mRNA_S-dermatodea_contig805.16233.1 ID=mRNA_S-dermatodea_contig805.16233.1|Name=mRNA_S-dermatodea_contig805.16233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig805:17339..18205- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAGCCATGGTGTCTCGACACCCGTTGTTTCTGAAGAGGACGTGGGGCT
GTGGGGGCCGAACGGGTTGTTGGCCACCCCCTACGTCAAGCTCTTCCTCT
TGCTTGGGTTTGTGACACAGGGTAGCCATGGTGTCTCGACACCCGTTGTT
TCTGAAGAGGACGTGGGGCTGTGGGGGCCGAACGGGTTGTTGGCCACCCC
CTACGTCAAGCTCTTCCTCTTGCTTGGGTTTGTGACACAGTACGTGAGGA
TCGGCTACCAAGAAGTGTACCCTCTGTGGGTGCTGAGCACTGAAGATGTA
GGAGGGCTAAATTGGGGCACCAAGCGGATAGGGGAGTACGTGAGGATCGG
CTACCAAGAAGTGTACCCTCTGTGGGTGCTGAGCACTGAAGATGTAGGAG
GGCTAAATTGGGGCACCAAGCGGATAGGGGAGGTGTTGGGTGTGTCAGGC
TTACTGATGGCTGTGGTGTTGGGTGTGTCAGGCTTACTGATGGCTGTG
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