mRNA_S-dermatodea_contig8038.16223.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8038.16223.1
Unique NamemRNA_S-dermatodea_contig8038.16223.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8038.16223.1 vs. uniprot
Match: A0A6H5JQP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.930e-28
Identity = 86/221 (38.91%), Postives = 100/221 (45.25%), Query Frame = 1 
Query:   70 TVGDPLAALMXXXXXXXXXXXXXXXXXXXXXXXXXGGEDRARLEEAVKVEPGSVTATIAKTGPGVFTIAVMEWMVANSAMSDKE-------SVTDRAAPRD-----QTAAA------------------------------------------------------VMVLPPSYLYPVPNDAK----GDLIGDGREHGIRERAGGYFSEESVAAHLWGKSWQ 522
            TVGDPL+ALM                         GG+DRARL +AV+VE  S T TI KTGPGVFT AVM WMV+++   D+        S T  AA  D      TAA                                                        M+LPPSYLYP+PN+A     G LIGDG E G+RERAGGY S ES+AAHLWG+SWQ
Sbjct:  293 TVGDPLSALMGALGEEGGAGGLLAGLL--------GGDDRARLRQAVEVEADSATETIVKTGPGVFTRAVMAWMVSSATGEDRAAPATADGSGTSSAAEEDIFHSTGTAARDADAFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAATRPAMILPPSYLYPIPNNAAAAKAGLLIGDGTESGVRERAGGYLSSESLAAHLWGRSWQ 505
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BLAST of mRNA_S-dermatodea_contig8038.16223.1 vs. uniprot
Match: D7G7P2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P2_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.060e-26
Identity = 91/243 (37.45%), Postives = 108/243 (44.44%), Query Frame = 1 
Query:   13 RGAASASSSVGTGLGGQNGTVGDPLAALMXXXXXXXXXXXXXXXXXXXXXXXXXGGEDRARLEEAVKVEPGSVTATIAKTGPGVFTIAVMEWMVANSAMSDKESVTDRAAPRDQTAAAVMV---------------------------------------------------------------------LPPSYLYPVPNDAK----GDLIGDGREHGIRERAGGYFSEESVAAHLWGKSWQ 522
            R AA  + + G G GG+  TVGDPL+ALM      XXXXX              GG+DRARL +AV+VE  S T TI KTGPGVFT AVM WMV+++   D  + T        + A   +                                                                     LPPSYLYPVPN+A     G LIGDG E G+RER GGY S ES+AAHLWG+SWQ
Sbjct:   42 RAAAGVTDAAGDG-GGRGTTVGDPLSALMGALGGEXXXXXLLTGLL--------GGDDRARLRQAVEVEADSATETIVKTGPGVFTRAVMAWMVSSATGEDGAAPTTTDGSGTISTAQEEIFHSTGTAALDTDVFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPSYLYPVPNNAAAAKAGLLIGDGTESGVRERVGGYLSSESLAAHLWGRSWQ 275
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8038.16223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQP8_9PHAE5.930e-2838.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7P2_ECTSI1.060e-2637.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8038contigS-dermatodea_contig8038:859..1989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010410.1
Exons2
Model size536
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925315.650083-CDS-S-dermatodea_contig8038:858..10721622925315.650083-CDS-S-dermatodea_contig8038:858..1072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8038 859..1072 +
1694079849.826836-CDS-S-dermatodea_contig8038:858..10721694079849.826836-CDS-S-dermatodea_contig8038:858..1072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8038 859..1072 +
1622925315.663371-CDS-S-dermatodea_contig8038:1667..19871622925315.663371-CDS-S-dermatodea_contig8038:1667..1987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8038 1668..1987 +
1694079849.836941-CDS-S-dermatodea_contig8038:1667..19871694079849.836941-CDS-S-dermatodea_contig8038:1667..1987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8038 1668..1987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8038.16223.1prot_S-dermatodea_contig8038.16223.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8038 859..1987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8038.16223.1

>prot_S-dermatodea_contig8038.16223.1 ID=prot_S-dermatodea_contig8038.16223.1|Name=mRNA_S-dermatodea_contig8038.16223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=178bp
TASARGAASASSSVGTGLGGQNGTVGDPLAALMGALAGAVGRGGGGGGGG
EGLLAGLLGGEDRARLEEAVKVEPGSVTATIAKTGPGVFTIAVMEWMVAN
SAMSDKESVTDRAAPRDQTAAAVMVLPPSYLYPVPNDAKGDLIGDGREHG
IRERAGGYFSEESVAAHLWGKSWQPGGL
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mRNA from alignment at S-dermatodea_contig8038:859..1989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8038.16223.1 ID=mRNA_S-dermatodea_contig8038.16223.1|Name=mRNA_S-dermatodea_contig8038.16223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1131bp|location=Sequence derived from alignment at S-dermatodea_contig8038:859..1989+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGCGTCGGCAAGGGGCGCTGCGTCGGCATCTTCCTCCGTGGGCACAGG
CCTCGGAGGGCAGAATGGAACCGTTGGAGATCCGCTAGCGGCCTTAATGG
GGGCGCTGGCTGGGGCAGTGGGACGAGGCGGGGGTGGGGGAGGGGGAGGG
GAGGGGCTTCTAGCGGGTTTACTCGGGGGTGAGGATCGTGCGCGCTTAGA
AGAGGCTGTCAAAGGTGAGTGGGTGTGGTGGTTTATTCTTTGAGCTTCGC
CCGTTTCTTTCTGAAGAGGGATGCCTGCCGTTGCATCGTTGAGGGCTTTC
TCGCATTCCTGTGTGCTGGTATATTTTTGCCGCACTACTGTTTTGGACCG
TGTAAACAGGGTAAGATGTCGGCAGCAAGTCGATCGCGAGCCGTGTTTGC
TTTCCGCGGACACGCCTCGCGACCTTCGTTGAACAGTCTTCAATATATAA
TATATATGTGTTCCCGGAACGGCCGGCGCCGCGAGAGCCCTACAAGCTCT
TGTGCGCCTGGTTTCGCGCCGACCTCGGGATTTTCTCTCCAATTATTTCA
GCTATTTGCGTCTTGTGTATGACGCCTGCTCTCCAAGAGTCTGCCCGTCT
CCTGCTTACCTCGCCCCAACGATTTATCCACCCTTTTGCACAATCGCGAA
AAGACCTGCACATCGCCTGCCGCGATTCGCTATGCGCACAACTATGACCG
CTTCCGCGCGTGTGGCGTAATTTTCCAATAAAAACGATGCCCCCCCCCGC
CTCGCCATCGCCCCCCCATCGCCCCCCCCTCGCCCCTCGGCCCAAACTAC
AACACAAAGTGGAACCCGGAAGCGTAACGGCGACGATAGCCAAGACCGGC
CCGGGAGTGTTCACCATAGCCGTCATGGAGTGGATGGTCGCTAACTCCGC
CATGAGTGACAAGGAAAGCGTCACCGACCGAGCGGCTCCTCGCGACCAGA
CGGCGGCAGCGGTGATGGTGCTCCCGCCTTCCTACCTGTATCCAGTCCCG
AATGACGCGAAGGGCGACCTGATCGGTGATGGGAGGGAGCACGGTATCCG
CGAGCGCGCCGGTGGCTACTTTTCAGAAGAGTCGGTCGCCGCTCATCTGT
GGGGAAAGTCTTGGCAACCCGGGGGGTTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8038:859..1989+

>mRNA_S-dermatodea_contig8038.16223.1 ID=mRNA_S-dermatodea_contig8038.16223.1|Name=mRNA_S-dermatodea_contig8038.16223.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig8038:859..1989+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGCGTCGGCAAGGGGCGCTGCGTCGGCATCTTCCTCCGTGGGCACAGG
CCTCGGAGGGCAGAATGGAACCGTTGGAGATCCGCTAGCGGCCTTAATGG
GGGCGCTGGCTGGGGCAGTGGGACGAGGCGGGGGTGGGGGAGGGGGAGGG
GAGGGGCTTCTAGCGGGTTTACTCGGGGGTGAGGATCGTGCGCGCTTAGA
AGAGGCTGTCAAAGACAGCGTCGGCAAGGGGCGCTGCGTCGGCATCTTCC
TCCGTGGGCACAGGCCTCGGAGGGCAGAATGGAACCGTTGGAGATCCGCT
AGCGGCCTTAATGGGGGCGCTGGCTGGGGCAGTGGGACGAGGCGGGGGTG
GGGGAGGGGGAGGGGAGGGGCTTCTAGCGGGTTTACTCGGGGGTGAGGAT
CGTGCGCGCTTAGAAGAGGCTGTCAAAGTGGAACCCGGAAGCGTAACGGC
GACGATAGCCAAGACCGGCCCGGGAGTGTTCACCATAGCCGTCATGGAGT
GGATGGTCGCTAACTCCGCCATGAGTGACAAGGAAAGCGTCACCGACCGA
GCGGCTCCTCGCGACCAGACGGCGGCAGCGGTGATGGTGCTCCCGCCTTC
CTACCTGTATCCAGTCCCGAATGACGCGAAGGGCGACCTGATCGGTGATG
GGAGGGAGCACGGTATCCGCGAGCGCGCCGGTGGCTACTTTTCAGAAGAG
TCGGTCGCCGCTCATCTGTGGGGAAAGTCTTGGCAACCCGGGGGGTTGTG
GAACCCGGAAGCGTAACGGCGACGATAGCCAAGACCGGCCCGGGAGTGTT
CACCATAGCCGTCATGGAGTGGATGGTCGCTAACTCCGCCATGAGTGACA
AGGAAAGCGTCACCGACCGAGCGGCTCCTCGCGACCAGACGGCGGCAGCG
GTGATGGTGCTCCCGCCTTCCTACCTGTATCCAGTCCCGAATGACGCGAA
GGGCGACCTGATCGGTGATGGGAGGGAGCACGGTATCCGCGAGCGCGCCG
GTGGCTACTTTTCAGAAGAGTCGGTCGCCGCTCATCTGTGGGGAAAGTCT
TGGCAACCCGGGGGGTTG
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