prot_S-dermatodea_contig8037.16221.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8037.16221.1
Unique Nameprot_S-dermatodea_contig8037.16221.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length268
Homology
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BLAST of mRNA_S-dermatodea_contig8037.16221.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.430e-66
Identity = 141/293 (48.12%), Postives = 159/293 (54.27%), Query Frame = 0 
Query:   15 ALRNQLATLEEQREQLASLLGDDPQEPLLQLQAELGATIDGI--RRSL---ENGQNSPSLGDANGE---------------------EPEF--VSGDTCLAPRVFDRRRARAVVEAVDAGNGTCLVTWVHPRHKREMACHYWKEVRNCKFSGPDCPFSHGVEVPLADLLPDQPGRKASSAGLPPGSGDGNTGASAGSPGRTSGSEGDNWLGSLGAGSRVLAQYHDRVWYEAAVDGPK-----------SDGLVAVRFKGFEDEGLVSVSADHSHLAPLDYGIDGAEDARGSGG 268
            AL  QLA L  QREQL +L+GDD   PL+ LQ EL   IDGI  R SL   + G+N                               EP F  V G  CLAPRVFDRRRARAVVE V++  GTCLVTWVHPR   E+ C +WKE R+CKFSGPDCPFSHGVEVPL  LLPD                               G  G +WL SL +GSRVLA YHDRVWYEA  +GP            S  L+AVRFKGFE +G VSV AD SHLAPL+  +  A +  G GG
Sbjct:    6 ALERQLADLRAQREQLVALVGDDSHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDD------------------------------GGGGSSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPLEAAVT-APEIHGVGG 267
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8037.16221.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPC0_9PHAE2.430e-6648.12Zinc finger CCCH-type with G patch domain-containi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 13..36
NoneNo IPR availableGENE3D2.30.30.140coord: 196..247
e-value: 1.1E-5
score: 27.5
NoneNo IPR availableGENE3D2.30.30.1190coord: 82..158
e-value: 7.9E-8
score: 34.3
NoneNo IPR availablePANTHERPTHR46297FAMILY NOT NAMEDcoord: 44..156
coord: 198..254
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 120..148
score: 11.413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8037contigS-dermatodea_contig8037:2336..7297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8037.16221.1mRNA_S-dermatodea_contig8037.16221.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8037 2002..7297 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8037.16221.1 ID=prot_S-dermatodea_contig8037.16221.1|Name=mRNA_S-dermatodea_contig8037.16221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=268bp
MEEHQGPADDMKTDALRNQLATLEEQREQLASLLGDDPQEPLLQLQAELG
ATIDGIRRSLENGQNSPSLGDANGEEPEFVSGDTCLAPRVFDRRRARAVV
EAVDAGNGTCLVTWVHPRHKREMACHYWKEVRNCKFSGPDCPFSHGVEVP
LADLLPDQPGRKASSAGLPPGSGDGNTGASAGSPGRTSGSEGDNWLGSLG
AGSRVLAQYHDRVWYEAAVDGPKSDGLVAVRFKGFEDEGLVSVSADHSHL
APLDYGIDGAEDARGSGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH