mRNA_S-dermatodea_contig8033.16217.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8033.16217.1 vs. uniprot
Match: D7FHX5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX5_ECTSI) HSP 1 Score: 224 bits (572), Expect = 2.100e-59 Identity = 246/836 (29.43%), Postives = 332/836 (39.71%), Query Frame = 1
Query: 1 MHTAAGTGAIESIELLISAGLSPKTKDIGGRTPLHHAA---ANGSAKCTSFLCAVARSTALSRDRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAL---GDDAVLWALRGGAGWQCHGTTSTRCVGQRYGGGR----PRSGLDGGVNIERIMAVWERFFENAAMACLGPE---PVVVNIDRDSDGRDRRASPIETIEMDTEGGVESYPEP------------QENCRTAHAGVVKTSR-----EAEGRRGDRGSDGHGS----RVDNECLEKGENIEVPHLEKKTNGLTIHCGAWGL--------GSFDHLLNETAGGDRPRPEPAAWTDVTSVEQCGGYDTPL----------------SDNLSIFGIPESINGYSDWAHSDVVFPPEGEESDATSTPTGLPSGE--AWMACWDGASEAVYYWNFSSGDVSWDAP---NICDGGGDLQ---RRVWDPRQEAFFTFDESGDSHWILDN---------FVER---TDSAGNDAGVAV----------------------SAIAVGEGKAG-SQVYVPCPPQEHAVRSSPSDCDDYLYAAGGEGSLSCGGKPSTNRWGTGELYPMQHTAARVEPSAEAQQSHDEVSGFFNAQER----------SMKG--------PFWAEARTSEHELNATNAEAEEP--RESPEAAAGRNVEETL--------DGLDFFDARACQDEQLESHNTRNVGWDQASATDGASIPGTESALAP--------LPAWVLWCPQA------SETLSYFVDQETGESSWVLPPAVVVPSKGWLRAWSEEHGTWFYANHWTGTVTWEL 2079
MHTAAG GA+ESIELL+SAGLSP+T+D GRTPLHHA +G+A+C SFLC VA ST LSRDR A A GDD ++ AL G R R GG+ R+ G V+ +RIMAVWERFFENAA A LG + P V++ + GR + + D GV E Q R H V TS E + GDR G D+ L ++ T A G G +H+ + A P A D+ G T L D + +PE I+G D + + P + + A P AW+ACWD ASE++YYW+ +SG++SW+AP + G L VWDP++EAFFT D+ G SHW++D+ VE TD A D V +A+G S V A+ ++ + D+ L +G G P + + E S + +D++ GFF+AQE S G P +AR L+ + E ++ R + A + + T DG D FD +SH ++ + A +G + ESA+A LP WV WC + + YFV++ETGESSWVLPP V S+GWLRAWSEEH F+AN WTG VTW+L
Sbjct: 1 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACLFPGSGAARCVSFLCVVAGSTVLSRDRTAGDTPLHFAVRARHGVCVEVLLSFAEGTSDILREANAKGETPLDLAAALSGDDGIVLALLDG---------DRRRHQPRSNGGKLSYLGRNVEGGTVDFQRIMAVWERFFENAARADLGGKKSSPDVISA-VGTVGRGGYGGVEQLVNTDETRGVGKLAEDGRWLGRGQPRATQTFDRDRH--FVTTSELGGGGVGESQTGDRNGRWDGGWCVDTADSRTFRSRRTWRPSGLADTSSIATAQDLARGTPPQHLERDGEDEHV--DVAPLQSPHRRQGAKEDLGVQVGVGESGTTLLSSDDADLHLFHTPRGGDGVEAVRLPERIHGNID-STLEPSTPASKDTNAAAEAAADNPYRRHGAWIACWDAASESIYYWDSNSGELSWNAPAPSTAIERGERLNGFPSPVWDPQREAFFTIDKDGASHWLVDSPSSPTWTTPVVEHRAATDGADGDIASLVVQDYTYDRTSASEESTTFSSWQQGLAIGAAAPEWSSSEVERDRDRDALNNTVNQVDEVLAW---DGQQLLAGLPYSFPMLDRQAVQQLPNTCGDEYSKDDINGNDDLHGFFDAQEEHATRRSAPSFSQAGAGQECAVEPIDGDARADGRVLHLASGEEQQRCLRANAAAVVSESTQNTTTAGKGNQPDGNDVFDTEEQPSYLRDSH--QDTDQNGLGAVEGGTRSHDESAVAEAYDPALTRLPLWVQWCSYSPHDGDDTNNQPYFVNEETGESSWVLPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDL 816
BLAST of mRNA_S-dermatodea_contig8033.16217.1 vs. uniprot
Match: A0A6H5KHS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS3_9PHAE) HSP 1 Score: 207 bits (526), Expect = 4.350e-53 Identity = 249/838 (29.71%), Postives = 335/838 (39.98%), Query Frame = 1
Query: 1 MHTAAGTGAIESIELLISAGLSPKTKDIGGRTPLHHAA---ANGSAKCTSFLCAVARSTALSRDRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAL---GDDAVLWALRGGAGWQCHGTTSTRCVGQRYGGGRPRSG--LDGG-VNIERIMAVWERFFENAAMACLG-----PEPV----------------VVNIDRD-------SDGR-------------DRRASPIETIEMDTEGGVESYPEPQENCRTAHAGVVKTSREAEGRRGDRGSDGHGSRVDNECLEKGENIEVPHLEKKTNGLTIHCGAWGLGSFDHLLNETAGGDRPRPEPAAWTDVTSVEQCGG----YDTPLS-DNLSIFGIPESINGYSDWAHSDVVFPPEGEESDATSTPTGLPSGE--AWMACWDGASEAVYYWNFSSGDVSWDAPN---ICDGGGDLQ---RRVWDPRQEAFFTFDESGDSHWILDNFVERTDSAGNDAGVAVSAIAVGEGKAGSQVYVPCPPQEHAVRSSPSDCDDYLYAAGGEGSLSCGGKP---STNRWGTGELYPMQHTAARVE--PSAEAQQ-----SH-----------------------DEVSG------FFNAQER----------SMKG--------PFWAEARTSEHELNATNAEAEEP--RESPEAAAGRNVEETL--------DGLDFFDARACQDEQLESHNTRNVGWDQ--ASATDGAS--------IPGTESALAPLPAWVLWCPQASE-----TLSYFVDQETGESSWVLPPAVVVPSKGWLRAWSEEHGTWFYANHWTGTVTWEL 2079
MHTAAG GA+ESIELL+SAGLSP+T+D GRTPLHHA + +A+C SFLCAVA ST LSRDR A A GDD +L AL G R + GG G ++G V+ +RIMAVWERFFENAA A LG P+ + +VN D DGR DR S + T E+ GG ES + N R V T+ R S S L +G + HLE+ +G H L + + D + T + + TP D + +PE I+G D + + PP + A P W+ACWD ASE+VYYW+ +SG++SW+AP + G L +WDP++EAFFT DE G SHW++ T + V A +G G + QE+ + + Y + +GS P S+ + + TA +VE P+ + QQ SH D+V+G FF+AQE S G P +A ++ + ++ R + A + T DG+D D DEQ S + DQ A +G + + + A+ LP WV WC + LSYFV++ETGESSWVLPP V S+GWL AWSEEH F+AN WTG VTW+L
Sbjct: 37 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACLFPGSAAARCVSFLCAVAGSTVLSRDRTAGDTPLHFAVRARQGVCVEVLLSFAAGTNDILREANANGETPLDLAAALSGDDVILLALLEADG--------RRRQPRSNGGNLSYLGRNVEGDTVDFQRIMAVWERFFENAARADLGRKKSSPDVISAVGTVGRGEYGGVEQLVNTDETRAAGKLAKDGRWLGRGQPRATQTLDRDISFVTTSELGGGGGGESQSGDR-NGRWDGGWCVDTADSRNLR-----SRSTSSVATARDLARGPPPQ--HLER--DGEDAHVDVAPLLPVGPMRRQGVKDDLSVQVGVGESGTTLLSSDDADLHLFHTPRGGDGVEAVRLPERIHGNID-STLEPSTPPIKATNAAAEAAADNPYRRHGTWIACWDAASESVYYWDSNSGELSWNAPGPSTAIERGNRLNGIPSPLWDPQREAFFTIDEDGASHWLVGYPSSPTWTT-----PVVEHRAAMDGADGDTASLV---QEYNPDRTTVSKESTTYTSWQQGSAVAAAAPEPSSSEVECDRDRGILGTTANQVEEDPAWDRQQPLAGFSHSLRMVDRQSIQTLPNTCGEKYTEDDVNGNDDLHEFFDAQEEHAARCSTPSSSHAGAGQECAVEPIDGDAGADNRVVHLASGPEQQRCLRANAAAVVSEYTQNTTTAGKGNQSDGIDLSDT----DEQPSSGRDSHQDTDQNGLGAVEGGTRFHDESSVVEADDLAMIRLPLWVQWCSYSPHDDDDTNLSYFVNEETGESSWVLPPDAVAESRGWLLAWSEEHQAHFFANQWTGNVTWDL 843 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8033.16217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8033.16217.1 >prot_S-dermatodea_contig8033.16217.1 ID=prot_S-dermatodea_contig8033.16217.1|Name=mRNA_S-dermatodea_contig8033.16217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=701bp MHTAAGTGAIESIELLISAGLSPKTKDIGGRTPLHHAAANGSAKCTSFLCback to top mRNA from alignment at S-dermatodea_contig8033:2357..4729+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8033.16217.1 ID=mRNA_S-dermatodea_contig8033.16217.1|Name=mRNA_S-dermatodea_contig8033.16217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2373bp|location=Sequence derived from alignment at S-dermatodea_contig8033:2357..4729+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8033:2357..4729+ >mRNA_S-dermatodea_contig8033.16217.1 ID=mRNA_S-dermatodea_contig8033.16217.1|Name=mRNA_S-dermatodea_contig8033.16217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4206bp|location=Sequence derived from alignment at S-dermatodea_contig8033:2357..4729+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |