mRNA_S-dermatodea_contig8025.16208.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8025.16208.1
Unique NamemRNA_S-dermatodea_contig8025.16208.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8025.16208.1 vs. uniprot
Match: D7FH67_ECTSI (Hemerythrin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH67_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.600e-35
Identity = 80/146 (54.79%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:    1 LFVHGKFRSSASSVVQAAEAMQASSHPGCAAQKTSAAAKGVETSFRTLLSKIEAHSEFEDTQLFRFFKEQFPEMGEAIRGLEADHSEKEAEETALTKLKSLREEPAVATASAN--DVATE--AVVALKSYAASLEGHLEREERALV 426
            +FVHGKFRSSA+S+VQAAE+MQ+    GC++ KT +A   +E S R+LL K+  HS+FED QLF FFKE  P++   IR LEADHSE      AL ++++LR  P  A A +   DVA+    VVALK+YA SLE HLEREER LV
Sbjct:    1 MFVHGKFRSSATSIVQAAESMQSGVEGGCSSTKTESAVGKIERSLRSLLGKVAKHSDFEDAQLFLFFKENLPDLEGQIRDLEADHSETNLGNDALDRIRNLRSAPTTAGAVSGGADVASAQAVVVALKAYAESLEIHLEREERVLV 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8025.16208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH67_ECTSI4.600e-3554.79Hemerythrin domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8025contigS-dermatodea_contig8025:852..4553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog2880.D7FH67
EggNOG free text desc.Hemerythrin HHE cation binding domain
EggNOG OGs2D5TW@1,2SZNI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHaemerythrin/HHE cation-binding motif
Ec32 orthologEc-13_000960.1
Exons3
Model size426
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8025.16208.1prot_S-dermatodea_contig8025.16208.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8025 852..4553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.7850807-CDS-S-dermatodea_contig8025:851..9191622925314.7850807-CDS-S-dermatodea_contig8025:851..919Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8025 852..919 +
1694079849.3257573-CDS-S-dermatodea_contig8025:851..9191694079849.3257573-CDS-S-dermatodea_contig8025:851..919Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8025 852..919 +
1622925314.799889-CDS-S-dermatodea_contig8025:2331..24991622925314.799889-CDS-S-dermatodea_contig8025:2331..2499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8025 2332..2499 +
1694079849.3395658-CDS-S-dermatodea_contig8025:2331..24991694079849.3395658-CDS-S-dermatodea_contig8025:2331..2499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8025 2332..2499 +
1622925314.8144069-CDS-S-dermatodea_contig8025:4363..45531622925314.8144069-CDS-S-dermatodea_contig8025:4363..4553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8025 4364..4553 +
1694079849.351622-CDS-S-dermatodea_contig8025:4363..45531694079849.351622-CDS-S-dermatodea_contig8025:4363..4553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8025 4364..4553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8025.16208.1

>prot_S-dermatodea_contig8025.16208.1 ID=prot_S-dermatodea_contig8025.16208.1|Name=mRNA_S-dermatodea_contig8025.16208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
LFVHGKFRSSASSVVQAAEAMQASSHPGCAAQKTSAAAKGVETSFRTLLS
KIEAHSEFEDTQLFRFFKEQFPEMGEAIRGLEADHSEKEAEETALTKLKS
LREEPAVATASANDVATEAVVALKSYAASLEGHLEREERALV
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mRNA from alignment at S-dermatodea_contig8025:852..4553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8025.16208.1 ID=mRNA_S-dermatodea_contig8025.16208.1|Name=mRNA_S-dermatodea_contig8025.16208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3702bp|location=Sequence derived from alignment at S-dermatodea_contig8025:852..4553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTTCGTGCACGGCAAATTCCGCTCGTCGGCTTCTTCTGTGGTGCAAGC
CGCCGAGGCGATGCAGGCGTCTGCGGCCGAAGGTGGGTTCTCTTTAAAAA
TAAATAAATAGATATATTGGCTTCAATCCCCCCCTGACTATACTCCAGGC
AGCCCGAGGTCTATCGTAGGGTGTGCCTTTCCCATCTCCTCCAATCCCGT
CCATTCATCGATTTCTATTCCCCGCGTTGGGTTCGTCAGCACCGCAGCTC
GTCAATTTTCACCGGATTTTGCTTTAATCCTCGCGCGTTTATCGTTTACT
GCCCTTAATCAGAGAAAATATGATGTGTAAACTCTGCCGGGACTCGAACC
CACGACTTCCGCAAACAGAGGCGTCGTTGTGTGTGGTTTTTCTATTTTTT
CTCTCTTGTGCTATCCGTATATGTAGTAAGTACCAGGGACAGTATTGCCG
TATTTGTACAAGTAGATTTTTAGTTGGTTATTTTCTCCCTTGGCGCATTG
TCCGATTCCGAATCCTCTTCTGGCGTTTTTTTATACTATTAAAAGTATAT
ATATGTTTCTATACTATTAATAGTATATATCTGGGGTATTATTTATTGTT
TCTTGTACCATATGCATAGTAAGTAGCAGGGACGGTATGGTGTAGTGTAG
AAGTAGAGGTATGATTAGTTATTTTCTCCTTGACTCTTTGGGCTTCTGAC
GACAAGTCGGATAGGTCGGATTAAGCCCATCGGCTTCAGTGTTCTTATCA
ATCAATCAATCAAACTGTTACCAACGTAACCATCGGGGACGCCGGATCTG
AAACGCCTCAAAACACCCCTCCCTAAAACACAAACCCTGAATCCCTCATA
TGACCAATCCAAAGGTAGTTGGGGTTGTCGACAGACTATAAAACTATTGA
TAATGTTGCAATCCGGAACACATTGGTGGAACTCGGAACGGGATCTGAGA
TGGGCTGGCCAATCAGGCTCGAGCACAGCAAAATGGGAAAACGCCTTCTA
CCTCCTGCGCGACAGACAAAAAAATACGATTTTCTTGCCCCCCTATCTTT
GGATATACTCATATATATTTAATAGTACCGCTTTGGTCGTGCTTGCCTGT
ATCATACGATTTTTGAGGCCGCTCTAAACACTAAATCCTATACGATTTTG
GGCGCGATTTTGTACACTAAACTCCTGTACGATTTTGAGGCCAAACAACA
TGATGTTTGTGTGGACCGCCAAGTGTTGAAAATAGTAGGATTTTTTACCT
CACGGGCGTAGCCTAGCCGTGGCTACCCACTAGTTTTGCCGTATTCCCCA
AGCGTTTCTGACATGGCGTACACCTCGGTGGGTGTGTACGGTGTACACCC
ATGTTTCTCCCGCGCGGTCAGCTGCCAAACAACACACAAAAGACGAGCCA
AAAATCGCGTGCAAGGCGCCTCGCTGTGTGACCCGCGACCAAAGTTCACG
CTTACGCTTACGCTTACGCTTACGCTCGAGTTCTTCCCACCCAGGTTGCG
CCGCGCAGAAAACCTCCGCAGCCGCGAAAGGCGTCGAGACCTCCTTTCGC
ACCCTCTTGTCCAAGATCGAGGCGCACAGCGAGTTCGAGGACACCCAGCT
CTTCCGTTTCTTTAAGGAACAGTTTCCAGAGATGGGGGAAGCGATCAGGT
GCGACACAGCAGTACAAGCAGTGGTGCTTTCGTTTTTGCGCGCGTTCAGG
AAGAGACTGGGCGACGGTGGTGGTGGTGGTGGTGGGGGGGGTAGGGGGGG
GGTAGCTAGGGAGGATAAAATGTTCCGGGATCCTCCCATGGTTGCGCAGG
CTGCCTTGCACAAAACTGAAAGTGTCCCGGCACTGTCCTCCATGATAAAA
CGTCCTCCATGATAAAAGTACCTTTATCGTAGGACTCTGGCGAGTTTGTG
GGTGGCGGGCGGCGGGGGGTGCGGGGTGGGGCGGGAGGGATACCACCAGG
ACGTCGCTCAGGACAAAGACTCGTGTACCATAACCATACAACAACATACA
TGGTAGGACACCACAGCATCATATGTAACAAGTGAGCCTCCATATGTGTA
ACTTGGACCATCTTCCCTGTTGAAAAGGTGACCCCAACGCCGCTCTGTGT
TTTTGAAAGTAGTACCAGGTACGTTTTTTTAGGCGGGCGGAATACTCTTC
CGTTTGGAAAAGGTGGGACCCCAACGCTCGCTCCATGTTTCTGAAAGATG
TTTATTTTGTAGGAGGGGATACTTCAAAAACAAATTGGGGTGGGGGATAC
TTGTGTTTAACGTATGTCGTATCAAAACGGACAATGGGCGGGGAAGGGTT
GAAATCCCTTATCTCGTTCCATTTAAAAATATTTGGTTTCGAGGGGGGGG
GTGGGGGTGGCATAGGTGTGTAGCTTGGACCATCTTCCCTCTTGAAAAGG
TGGGACCCCAACCCTCGCTCTATGTTTCTAAAGTCTTTATGTCTTAGGGG
TGCTGGCTTGGCTCGTGTTTTGATTGTTTCCCATTTCGATAGTAAAAATG
CATGATTTTGGTGCATGCAGGCGGTGGAGGCGGCACGTTGTTTGTATTGA
CTGAAATGCACAGCAGCAGAATCCGTGTCAGCCTTCAATAGCATCCGTGA
CGGGAAGCCTGCTGAAAACATTTATGCCGGAATAACTTGTAATATTGTTT
TTTTGTTTTTTGTTTGATGACTTGTCTATGAATATCAGCCCGGAAGAGAA
GATTGCAGATGTTGTAAGGCGAGACCACATTGGGGTCTGGCTCGTCGTGT
AAATGTTAGGCGTACTGTTTGGCACACGCTTGGCCCTGATCACTACTGTT
TACCTCTGTAATATTATACGATACGGCGAAGAGATTACATTATACTTCGA
AGTACAGCCATTAGCCACGGTTAGGTACACAAGAGTATCAAGGCTGTTTG
ACGCGAAATATACATTGTTTACAAAGAAACAGAACACACAGAAAGTGTAC
ACTCCAGAACTCGTCGGGGCAGGACCCGCGTGGACCTTGTTGTACACAAA
ACTGAGATGATTTCATCACCCCCCGTAAAAAAAAATAGATTTCAGAAACA
TAGAGCGAGCGTTGGGGTCCCACCTTTTCAAGAGGGTTCATCCCCCCCCC
CCCCCCCCGAAAGACAAGAAATGTGCAATACCTGGCTCAGCAGGACGTCC
CCCGGCGAACCGTCAGTCACGTTTCTTCGCGCGTGCTACCACATGTTTAT
TGTAGCCTCAACAAACGGACCCAGTTCCGTCCCGAATTGTAACCATCGAC
GAAATACCCCAGTCCTAACCTAGTCCTAAATGGGCTATCCCAACATCCCT
CCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTC
CCTTCCCTTCCCTACCCTACCCCCTCCACGCGCGGTCTCCACCTGGACTA
CTACCCCTGTGTTTGGTGCCCGCGAAACGCTCGGTTCTACGTGTTCTGCG
CAATGTTACACGATGTTACGCCATGCTACGCGATGCTGCGCGGCGCCGCG
CTATGCTTAAAGGGGTCTCGAGGCCGACCACTCGGAAAAGGAGGCGGAAG
AGACTGCCCTAACGAAGCTCAAGTCCCTTCGCGAAGAGCCCGCCGTCGCC
ACCGCTTCGGCCAATGACGTGGCGACAGAGGCGGTGGTCGCTCTGAAGAG
TTACGCCGCCAGCCTGGAGGGGCACCTAGAGAGGGAGGAGAGAGCGCTGG
TA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8025:852..4553+

>mRNA_S-dermatodea_contig8025.16208.1 ID=mRNA_S-dermatodea_contig8025.16208.1|Name=mRNA_S-dermatodea_contig8025.16208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig8025:852..4553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTTCGTGCACGGCAAATTCCGCTCGTCGGCTTCTTCTGTGGTGCAAGC
CGCCGAGGCGATGCAGGCCTGTTCGTGCACGGCAAATTCCGCTCGTCGGC
TTCTTCTGTGGTGCAAGCCGCCGAGGCGATGCAGGCTTCTTCCCACCCAG
GTTGCGCCGCGCAGAAAACCTCCGCAGCCGCGAAAGGCGTCGAGACCTCC
TTTCGCACCCTCTTGTCCAAGATCGAGGCGCACAGCGAGTTCGAGGACAC
CCAGCTCTTCCGTTTCTTTAAGGAACAGTTTCCAGAGATGGGGGAAGCGA
TCAGTTCTTCCCACCCAGGTTGCGCCGCGCAGAAAACCTCCGCAGCCGCG
AAAGGCGTCGAGACCTCCTTTCGCACCCTCTTGTCCAAGATCGAGGCGCA
CAGCGAGTTCGAGGACACCCAGCTCTTCCGTTTCTTTAAGGAACAGTTTC
CAGAGATGGGGGAAGCGATCAGGGGTCTCGAGGCCGACCACTCGGAAAAG
GAGGCGGAAGAGACTGCCCTAACGAAGCTCAAGTCCCTTCGCGAAGAGCC
CGCCGTCGCCACCGCTTCGGCCAATGACGTGGCGACAGAGGCGGTGGTCG
CTCTGAAGAGTTACGCCGCCAGCCTGGAGGGGCACCTAGAGAGGGAGGAG
AGAGCGCTGGTAGGGTCTCGAGGCCGACCACTCGGAAAAGGAGGCGGAAG
AGACTGCCCTAACGAAGCTCAAGTCCCTTCGCGAAGAGCCCGCCGTCGCC
ACCGCTTCGGCCAATGACGTGGCGACAGAGGCGGTGGTCGCTCTGAAGAG
TTACGCCGCCAGCCTGGAGGGGCACCTAGAGAGGGAGGAGAGAGCGCTGG
TA
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