prot_S-dermatodea_contig8022.16206.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8022.16206.1
Unique Nameprot_S-dermatodea_contig8022.16206.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length668
Homology
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: D8LM38_ECTSI (Excision repair helicase ercc-6-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM38_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 4.910e-80
Identity = 132/176 (75.00%), Postives = 143/176 (81.25%), Query Frame = 0
Query:  504 AFSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAP------------RGAEHKWDYVVLDEGHKIKNSSTR 667
            AFSVPAELY RMY HQR G+RWLW LHQGDMGGILGDDMGLGKTFQVTCFLAGLF T QA SALVLAPKSVMRGWE EL RWLVRAACP AEVVV+ SEM AKARR+AI  AA+GG+ GRGAVL+TTYGMVS+NP  FAP               +H WDYV+LDEGHKIKN+ST+
Sbjct:   34 AFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVRAACPKAEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIEREEPRKHVWDYVILDEGHKIKNASTK 209          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A6H5KD23_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD23_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.120e-72
Identity = 133/180 (73.89%), Postives = 145/180 (80.56%), Query Frame = 0
Query:  504 AFSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEV----VVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAP----------RGA--EHKWDYVVLDEGHKIKNSSTR 667
            AFSVPAELY RMY HQR G+RWLW LHQGDMGGILGDDMGLGKTFQVTCFLAGLF T QA SALVLAPKSVMRGWE EL RWLV+AACP AEV    VV+ SEM AKARR+AI  AA+GG+ GRGAVL+TTYGMVS+NP  FAP          RG   +H WDYV+LDEGHKIKN+ST+
Sbjct:  500 AFSVPAELYNRMYAHQRIGVRWLWSLHQGDMGGILGDDMGLGKTFQVTCFLAGLFGTRQAKSALVLAPKSVMRGWEDELGRWLVKAACPKAEVRQEVVVMASEMPAKARRRAIALAAEGGSRGRGAVLITTYGMVSSNPKQFAPAVGGSGGWIERGEPRQHVWDYVILDEGHKIKNASTK 679          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A7S2UB82_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB82_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.290e-33
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = 0
Query:  507 VPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAAC-PLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAPRGAEHKWDYVVLDEGHKIKNSSTR 667
            VP  LY  +Y HQ++G++W+  +H   +GGILGDDMG+GKT+Q   F+ GL       SALV+AP +++R WE E +R ++R  C P   + V+ S++    R + ++EA          V +TTYG+V ++P  F P G   +WDYV+LDEGHKIKN S +
Sbjct:   15 VPRPLYDSLYNHQKSGVQWMASMHNNRIGGILGDDMGMGKTYQTLTFIGGLMKAKTIKSALVVAPVTLLRTWEKEAER-VIRTLCLPRVNIKVVSSDIKEPRRSRVLVEALSCSPQSPHLV-ITTYGLVGSSPLSFVPDGCA-EWDYVILDEGHKIKNPSAK 173          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A7S2E6H2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6H2_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.100e-31
Identity = 76/164 (46.34%), Postives = 103/164 (62.80%), Query Frame = 0
Query:  507 VPAELYKRMYPHQRTGIRWLWGLHQGDM-GGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAP--RGAEHKWDYVVLDEGHKIKNSSTR 667
            +P++LY R+YPHQR G+RW+  LH   + GGILGDDMG+GKT+Q   +L GL  +    +AL++ P S+MR WE E +  L R   P   + VL S++  K RR  IL  A   +     +++TTYG+VS+NP    P     E  WDYVVLDEGHKIKN +T+
Sbjct:  364 IPSDLYHRLYPHQRVGVRWIASLHNAPITGGILGDDMGMGKTYQTLTYLGGLMKSKTIRNALIICPVSLMRTWEREARDILERCCVPRITISVLASDVR-KPRRHDILVDALTTSYKYPQLVITTYGLVSSNPLDLIPVENEQERLWDYVVLDEGHKIKNPTTK 526          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A087TZQ3_STEMI (DNA excision repair protein ERCC-6-like protein (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TZQ3_STEMI)

HSP 1 Score: 130 bits (326), Expect = 4.230e-31
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 0
Query:  502 LVA--FSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAPR-GAEHKWDYVVLDEGHKIKN 663
            LVA  F +  E+Y+++YP+QR G+ W+W L +   GG+LGDDMGLGKTFQV  FL+GL   D     L++ P S++  WE E K+W     CP   V       S K R + +L         RG VL+T+YGM+ +N        G +  WDYV+LDEGHKIKN
Sbjct:    3 LVADEFHIFHEIYEKLYPYQREGVAWMWSLFKKRKGGVLGDDMGLGKTFQVIAFLSGLIDADLVKHILIIMPVSLLPNWEREFKKW-----CPGISVHCFHGS-SKKERERNLLRVQR-----RGQVLLTSYGMILSNIDSLTSLDGEKFVWDYVILDEGHKIKN 156          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A7S4JE07_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JE07_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.570e-29
Identity = 73/164 (44.51%), Postives = 103/164 (62.80%), Query Frame = 0
Query:  507 VPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFA---PRGAEHKWDYVVLDEGHKIKNSSTR 667
            VP +LY R+Y HQ+ G++WL  LH   +GGILGDDMGLGKTFQ   FL GL  +    SALV  P S++R WE E +  L  +      + V+ S++S K +R  +L++A   +     + +TTYG+V++NP+ F      G +  W+YV+LDEGHKIKN ST+
Sbjct:  206 VPRDLYDRLYDHQKVGVQWLASLHTDGIGGILGDDMGLGKTFQTLTFLGGLMVSGTIRSALVCCPVSLLRTWEKEARDILEESFGLDVSISVISSDVSKK-KRTQLLQSAMNCSTKYPHLAITTYGLVTSNPYDFIRTDQNGEKMAWNYVILDEGHKIKNPSTK 368          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A7D9M5I8_PARCT (DNA excision repair ERCC-6-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5I8_PARCT)

HSP 1 Score: 127 bits (318), Expect = 1.770e-29
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 0
Query:  505 FSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAPR--GAEHKWDYVVLDEGHKIKNSSTR 667
            F +P ++Y ++YP+Q+ GI W W L++G  GGILGDDMGLGKT QV  FLAG+F +    +AL++ P S++  WE E K+W    A  +       S M  +    A +++ +G       V +TTYG+ +     F+    G    WDY++LDEGHKIKN++ +
Sbjct:   23 FKLPEKIYSKLYPYQKEGIMWFWRLYEGRKGGILGDDMGLGKTIQVISFLAGMFGSGHVKNALIIMPVSLLTNWEKEFKKW----APEIRVRNFHGSNMKQRIDNLAKVQSRNG-------VCLTTYGLANTCHKQFSEDRYGDTFTWDYIILDEGHKIKNTANK 176          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: UPI0003F059C9 (DNA excision repair protein ERCC-6-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F059C9)

HSP 1 Score: 135 bits (341), Expect = 3.060e-29
Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 0
Query:  505 FSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAPR---GAEHKWDYVVLDEGHKIKNSSTR 667
            FS+  ELY+++YP+QR  I W WGLH+   GGILGDDMGLGKT QV  FL+GLF  ++  S L++ P +++  WE E  +W          + VL    S K  R+  L         RG  L++TYG++S N    A     G +  WDYV+LDEGHKIKN S +
Sbjct:  109 FSIRKELYEKLYPYQRESILWFWGLHKKKSGGILGDDMGLGKTIQVIAFLSGLFDAERVKSILIVLPATLIINWEREFDKWA-------PGIRVLTYHGSNKRERERALSKVQR----RGGALLSTYGIISNNWQEVATNDRDGRDFVWDYVILDEGHKIKNKSNK 263          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: A0A8J4SVW6_9TREM (DNA excision repair protein ERCC-6 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4SVW6_9TREM)

HSP 1 Score: 133 bits (335), Expect = 1.470e-28
Identity = 78/184 (42.39%), Postives = 105/184 (57.07%), Query Frame = 0
Query:  505 FSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLF-STDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGM-----------VSANPHHFAPR---------GAEHKWDYVVLDEGHKIKNSSTR 667
            F +P+ELY+++YP+QR G+RWLW LH    GG+L DDMGLGKT QV  FL+GLF S  +  SALV+ P SV+  WE ELKRW      P   VVVL  ++   AR + + +        +G +++TTYG+           ++ANP               G E  W+YV+LDE HKIKN S +
Sbjct:  219 FLMPSELYEKLYPYQREGVRWLWHLHNNGPGGVLADDMGLGKTVQVIAFLSGLFISRPRRFSALVIMPVSVLVTWEAELKRW-----APALRVVVL-HDIGRVARLRQLSKVQH-----QGGIVLTTYGLMASSALDFVIDINANPQFLRSMPASNDLQRVGREFTWNYVILDEAHKIKNPSAK 391          
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Match: UPI000C6E16C4 (DNA excision repair protein ERCC-6-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E16C4)

HSP 1 Score: 124 bits (311), Expect = 2.080e-28
Identity = 64/160 (40.00%), Postives = 91/160 (56.88%), Query Frame = 0
Query:  505 FSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQVTCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLVSEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAPR-GAEHKWDYVVLDEGHKIKN 663
            F +  EL+ ++Y +QR G++WLW L++   GG+LGDDMGLGKT Q+  FL+G+F  ++    L++ P S++  W+ E K+W+     P        S    K  R  I     GG      VL+T+YG V  N    + R G E  WDYV+LDEGH+IKN
Sbjct:   15 FYLHHELFNKLYSYQRDGVKWLWNLYKKKKGGVLGDDMGLGKTIQIIAFLSGMFDLEEIKHVLIIMPVSLLPNWDREFKKWV-----PGMNTSNFYSSNKRKRERNLIKVQCYGG------VLLTSYGTVITNSEILSKREGREFVWDYVILDEGHRIKN 163          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8022.16206.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM38_ECTSI4.910e-8075.00Excision repair helicase ercc-6-related n=1 Tax=Ec... [more]
A0A6H5KD23_9PHAE1.120e-7273.89Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S2UB82_9STRA8.290e-3342.59Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2E6H2_9STRA2.100e-3146.34Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A087TZQ3_STEMI4.230e-3143.64DNA excision repair protein ERCC-6-like protein (F... [more]
A0A7S4JE07_9STRA1.570e-2944.51Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7D9M5I8_PARCT1.770e-2939.39DNA excision repair ERCC-6-like (Fragment) n=2 Tax... [more]
UPI0003F059C93.060e-2943.37DNA excision repair protein ERCC-6-like n=1 Tax=Sa... [more]
A0A8J4SVW6_9TREM1.470e-2842.39DNA excision repair protein ERCC-6 n=1 Tax=Paragon... [more]
UPI000C6E16C42.080e-2840.00DNA excision repair protein ERCC-6-like n=1 Tax=Ce... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 511..667
e-value: 0.0018
score: 25.5
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 527..667
score: 12.804
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 530..665
e-value: 6.7E-20
score: 71.1
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 502..667
e-value: 9.4E-38
score: 131.5
NoneNo IPR availablePANTHERPTHR45629:SF2DNA EXCISION REPAIR PROTEIN ERCC-6-LIKEcoord: 504..667
NoneNo IPR availablePANTHERPTHR45629FAMILY NOT NAMEDcoord: 504..667
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 505..666

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8022contigS-dermatodea_contig8022:3830..7294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8022.16206.1mRNA_S-dermatodea_contig8022.16206.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8022 3830..7294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8022.16206.1 ID=prot_S-dermatodea_contig8022.16206.1|Name=mRNA_S-dermatodea_contig8022.16206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=668bp
MDANKRARDASRTPMRTPGKSDFKRPAFALGRISFGSSSSSDAESSLEKG
RDFELQSAAAASTAARPSAAPASPCALTTSSRPLPSRADPNILADRSLRN
NEAPDAEHGKRPARFSSSSSAIGEAGSFGDSRRPAVVPNKCKGFFDFQVP
ADRRPRQKEEEEGRGSRSAATAGRGRFAVDLSRDDDEENVAPEAETSGRR
APEGGGGGGAATAAAAGAGSSSASPSCTGGASWHSSPPRLGYEERSSSCG
GFAGEFDGEDLFDGGVYVYSPSPPPAAAGAGAGAANSSASAPSPAPEASG
SSPVRSQVVDLSYSSPPSGPLSAERMRGELGRRRGGLASTSRTSEEKNSG
GNVCSDADDNNIDAFADCVDVGLSSRGSGAGAHHGVNVEEDATGEGSDVD
VAMVVAAGPSARGAGAGAAGAGAGDRSTGASARAVTAGAAEAGAPGASAG
GRYFKPGETGDWEREASGSRWKMEAEGPAGGSESAAGSGLGSGSARKGGR
GLVAFSVPAELYKRMYPHQRTGIRWLWGLHQGDMGGILGDDMGLGKTFQV
TCFLAGLFSTDQAASALVLAPKSVMRGWETELKRWLVRAACPLAEVVVLV
SEMSAKARRKAILEAADGGALGRGAVLVTTYGMVSANPHHFAPRGAEHKW
DYVVLDEGHKIKNSSTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR000330SNF2_N
IPR038718SNF2-like_sf
IPR027417P-loop_NTPase