prot_S-dermatodea_contig8022.16205.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8022.16205.1
Unique Nameprot_S-dermatodea_contig8022.16205.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length473
Homology
BLAST of mRNA_S-dermatodea_contig8022.16205.1 vs. uniprot
Match: A0A6H5KFF8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF8_9PHAE)

HSP 1 Score: 513 bits (1321), Expect = 3.650e-176
Identity = 284/487 (58.32%), Postives = 350/487 (71.87%), Query Frame = 0
Query:    6 STLIHSAAFTEQLDLLGPGATVEQLAVTERDVQYLGIAVDES-------TGDVFFATSNSALRRARYSSSEPASWQTTTVIGGSVQVQVAGYNLGASLDDVVSFSIRGVECSNLRRESSNKLLCVSGDSAVTN-LGEDINADDIVVQTVIGGRTAGVFPGAFVDAKLADHSLKPIITHVEATSHRINPRAICFDPINRYLYYSDIDTRSIERIGVGE----GSAVT--VEYDTFLADVGLVYGMAVDAGEGQSGGFLYFADSRGGTVSRVQLSTDDQQH---AAIQVLVSGVTEPRGVALEPNGSR--LFFVLHGGSIRAVARDGSTVTTVSRT-VQREDEGYEVRRLDSGTRLHGIAISATADGDEDPTELRLYWSESGRRPALKRSSLDGTRSETVLAPVAGATGDDEHRRLLWPQGLAFGAGASAGLLYYERLGAIRVLA-NPAEATADTVVEEDSYPAAVAIRTLFTRAENQGLTEKYFTSSV 471
            +TLIH  AFTEQL+L+G  A+VEQLA+T+ DVQ+LGI VDES       +GDV++ATSNSA++RA Y S++  SW  TTV+GG V+V+V GYNLG S+DDVVSFS++GVEC   RRESSN L+C  GD AVT+ LGE +  +DIVVQT  GG T G +PG FVDAKLADHSLKPIIT VEAT   I+PRA+CFD     LYYSD+ TRS+ RI +      GS +T  VE+D FL DVGLV GMA+D  EGQ+GGF+YF+D++GGT+SRV+L  D  +     A QVL SG+ +P G+ALEP+G R  LF+ L GG I AV+RDGS  T+V  T V  E  GYEVRR DSGTRL GIAISA+  G  DPTE+RLYW+ESGR PA+KRS+LDGTR E V     G    +   +L+WP+GLAFGA AS GLL+ E LG++R+L   PA  + DT+ E DSYPAAVAI  L   A  +G  E++FT SV
Sbjct:   36 ATLIHRGAFTEQLNLVGADASVEQLALTDDDVQFLGITVDESRSGGKMGSGDVYYATSNSAIQRAHYDSAKSPSWYVTTVVGGHVEVRVEGYNLGTSIDDVVSFSVKGVECPTRRRESSNTLVCALGDPAVTSDLGESVGTEDIVVQTASGGWTQGGYPGDFVDAKLADHSLKPIITRVEATGRTISPRALCFDSAGGTLYYSDLATRSLNRISLDNSGDGGSTLTAKVEFDAFLPDVGLVQGMAIDVSEGQNGGFVYFSDAQGGTISRVELPADGTRPEVPGARQVLASGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGVLDPTEIRLYWAESGRTPAIKRSTLDGTRPEDVSVEDDGT---EAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPARGSVDTIAEADSYPAAVAIHALVAAAGREGAEERFFTHSV 519          
BLAST of mRNA_S-dermatodea_contig8022.16205.1 vs. uniprot
Match: A0A7S2RWP2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWP2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.260e-23
Identity = 118/451 (26.16%), Postives = 212/451 (47.01%), Query Frame = 0
Query:   36 DVQYLGIAVDESTGDVFFATSNSALRRARYSSSEPASWQ-TTTVIGGSVQVQVAGYNLGASLDDVVSFSIRGVECSNLRRESSNKLLCVSGDSAVTNLGEDINADDIVVQTVIGGRTAGVFPGAFVDAKLADHSLKPIITHVEATSHRINPRAICFDPINRYLYYSDIDTRSIERIGVGEGSAVTVEYDTFLADVGL--VYGMAVDAGEGQSGGFLYFADSRGGTVSRVQLST---------DDQQHA----AIQVLVSGVTEPRGVALEPNGSRLFFVLHG-GSIRAVARD-GSTVTTVSRTVQREDEGYEVRRLDSGTRLHGIAISATADGDEDPTEL--RLYWSESGRRPALKRSSLDGTRSETVLAPVAGATGDDEHRRLLWPQGLAFGAGASAGLLYY-ERLGAIRVLANPAEATADTVVEEDSYPAAVAIRTLFTRAENQGLTEK 465
            DV Y GIA+D + G ++ +T +S +RR  ++ +     +    ++ G   ++V G+NLG+S  +V S  ++GV C+ +   +S +L C+ GD  V  L   I  D + V     G +  V P     ++ A    KPI+  VE  +    P A+  D   R LY+S+  +++I+   + +G+ +       +A VG+  V  + VD+    +  +LYF+++  G V R +L+          + ++ A    A +V+V G+ +PRG+AL+     LF V  G G I  V  D   T       + ++   Y+ +   +   L G+A+     G     +   RL+W+E      +++ ++ GT S +V +  +    D     ++WP+G+   A    GL+Y  E LG I  L+      +  +V++ S+ AA  I++  T     G   K
Sbjct:  145 DVIYHGIALDAAGGALYVSTGHS-IRRVNFTDAPLGPEEGPRDLVAGYRTIRVTGFNLGSSPAEVESVKVKGVACARVVYYNSTRLDCIVGDPDV--LSSPIPEDCVSVAVRGAGASDRVTPEVLAVSRRAAGDRKPIVYLVEVDTVGFEPLAVAVDSAGRRLYWSNRASKTIQSSRL-DGTDLRT-----MATVGVDRVQDLLVDS----ASDYLYFSEASSGQVRRCRLAAHLVPLETQEEGRERAPSCDAAEVVVEGLRQPRGLALDREDGFLFVVEGGFGRIHRVTLDEDGTAPGRHAGLPKQLHVYQAK---TSVELSGVAVLPPEAGQNPHFDFSHRLFWTEINSEK-VQQGTIHGTGSRSVPSVPSYGVADP----VIWPKGIV--ADDQRGLVYVSEYLGRIWELSYTNATHSRLLVDQSSFSAASQIKSFLTSIAAVGTRTK 572          
BLAST of mRNA_S-dermatodea_contig8022.16205.1 vs. uniprot
Match: A0A2D4CGF2_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGF2_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.770e-5
Identity = 93/410 (22.68%), Postives = 168/410 (40.98%), Query Frame = 0
Query:   28 EQLAVTERDVQYLGIAVD------------ESTGDVFFATSNSALRRARYSSSEPASWQTTTVIGGSVQVQVAGYNLGASLDDVVSFSIRGVECSNLRRESSNKLLCVSG-------DSAVTNLGEDINADDIVVQTVIGGRTAGVFPGAFVDAKLADHSLKPIITHVEATSHRINPRAICFD--PINR--YLYYSDIDTRSIERIGVGEGSAVTVEYDTFLADVGLVY--GMAVDAGEGQSGGFLYFADSRGGTVSRVQLSTD--DQQHAAIQVLVSGVTEPRGVALEPNGSRLFFVLHGGSIR----AVARDGSTVTTVSRTVQREDEGYEVRRLDSGTRLHGIAISATADGDEDPTELRLYWSESGRRPALKRSSLDGTRSETVLAPVAGATGDDEHRRLLWPQGLA 406
            ++L+ T+ D + + +A+D            E+     + +   A+R AR   S        T +G  V+V+  G N G+S  D++   ++   C ++ + + N + C+ G       D     L   +  +D V++T  G  T      A +   LA     P++  ++  +  + P+A+     PI+    LY+ +     I R  + + SA+ V  D      GLV        +  G     LY++    G + RV  +     +  AA  +++SG++ PRG+A++P  + L++    G +     AV + GS   T   T Q       +  L + TRL G+A+ +            LYW E+       R+ +     E V        G   +  L WP+G+A
Sbjct:   42 QELSGTQSDARLVALAIDTPFAPATGAAGVEAARPRLWWSDGRAIRSARLDGSN-----VRTELGAIVRVRWRGANFGSSRADLLDLLVKNTRCVSVTQWTPNVVECLVGLPDRFPVDDQAARLF--VTPNDCVIRTTRGEMTGVAQSYAEM---LATGYPSPVVQAIDIDAAFVLPQAMTIPRPPISADAALYWFNAADGRIYRSSLTD-SAINVVQDRVWGVRGLVVLDSAPFSSPSGSLTRALYYSVEPKGEIRRVTWTPGVWPRLDAAADIVLSGLSSPRGLAIDPGTTFLYYTEKTGRLYRVPVAVMQSGSLSLT-GPTPQL------LITLSTMTRLDGLAVDSKY----------LYWCETNSN-IFARAPVATFEREIVA-------GGSANSLLSWPRGVA 415          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8022.16205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFF8_9PHAE3.650e-17658.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RWP2_9STRA5.260e-2326.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4CGF2_PYTIN2.770e-522.68Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 273..314
e-value: 4.1
score: 13.3
coord: 329..380
e-value: 8.0
score: 10.9
coord: 173..217
e-value: 0.64
score: 19.1
coord: 222..268
e-value: 18.0
score: 7.9
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 161..348
e-value: 1.8E-16
score: 62.0
NoneNo IPR availablePANTHERPTHR46513FAMILY NOT NAMEDcoord: 151..320
coord: 180..384
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 167..408

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8022contigS-dermatodea_contig8022:1114..3217 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8022.16205.1mRNA_S-dermatodea_contig8022.16205.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8022 1114..3217 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8022.16205.1 ID=prot_S-dermatodea_contig8022.16205.1|Name=mRNA_S-dermatodea_contig8022.16205.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=473bp
AAAAQSTLIHSAAFTEQLDLLGPGATVEQLAVTERDVQYLGIAVDESTGD
VFFATSNSALRRARYSSSEPASWQTTTVIGGSVQVQVAGYNLGASLDDVV
SFSIRGVECSNLRRESSNKLLCVSGDSAVTNLGEDINADDIVVQTVIGGR
TAGVFPGAFVDAKLADHSLKPIITHVEATSHRINPRAICFDPINRYLYYS
DIDTRSIERIGVGEGSAVTVEYDTFLADVGLVYGMAVDAGEGQSGGFLYF
ADSRGGTVSRVQLSTDDQQHAAIQVLVSGVTEPRGVALEPNGSRLFFVLH
GGSIRAVARDGSTVTTVSRTVQREDEGYEVRRLDSGTRLHGIAISATADG
DEDPTELRLYWSESGRRPALKRSSLDGTRSETVLAPVAGATGDDEHRRLL
WPQGLAFGAGASAGLLYYERLGAIRVLANPAEATADTVVEEDSYPAAVAI
RTLFTRAENQGLTEKYFTSSVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000033LDLR_classB_rpt
IPR0110426-blade_b-propeller_TolB-like