mRNA_S-dermatodea_contig12607.1610.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12607.1610.1
Unique NamemRNA_S-dermatodea_contig12607.1610.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12607.1610.1 vs. uniprot
Match: D7G4Q3_ECTSI (PCI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.710e-8
Identity = 88/233 (37.77%), Postives = 108/233 (46.35%), Query Frame = 1 
Query:   61 MAQAWITEVSMEVNAGEPSGIRPPXXXXXFAVPXXXGIQPLDTSPSPPAPALDTAANVTAAPAAPPGSASG------------FYQDPFASYTQYGA-QQYPDPQ---WTSGYFGAYNSYNSSFPQQHQGYA-GQNFQGYGGFHDPQQYAQXXXXXXXXXXXXXXXXXXXXXXXXXXVQAYAVQPPQPFGQQQYLPTPATPATVSQQMQPPLPAEVAPGTL------APLPPL 690
            MAQ+WITEVSME++A  P      XXXXX    XXX              A+   A ++ A AAPPG   G            FYQDP++S++QYGA QQY DPQ   W +GY+  YN YN+  PQQ+Q Y    ++QGY      QQ+ Q                           QAY  Q P   GQ  YLPTP          QPP+PA+ APG        AP PP+
Sbjct:    1 MAQSWITEVSMELDAETPKPXXXXXXXXXXXXXXXXS-------------AVQAGAQISYA-AAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQW-AGYYPGYN-YNNGHPQQYQAYPPAPSYQGYVQDAQQQQFGQQAYAQQWAGYATAVPQPQPVAP-----QAYPAQAPYLQGQP-YLPTPEI-------AQPPVPAQ-APGAFLGGSGGAPPPPI 203
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12607.1610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q3_ECTSI2.710e-837.77PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12607contigS-dermatodea_contig12607:308..1850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue7.6e-09
Seed eggNOG ortholog2880.D7G4Q3
Preferred nameLENG8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size690
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924255.2177346-CDS-S-dermatodea_contig12607:307..6431622924255.2177346-CDS-S-dermatodea_contig12607:307..643Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12607 308..643 +
1694079128.6739297-CDS-S-dermatodea_contig12607:307..6431694079128.6739297-CDS-S-dermatodea_contig12607:307..643Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12607 308..643 +
1622924255.2281656-CDS-S-dermatodea_contig12607:1496..18501622924255.2281656-CDS-S-dermatodea_contig12607:1496..1850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12607 1497..1850 +
1694079128.6881597-CDS-S-dermatodea_contig12607:1496..18501694079128.6881597-CDS-S-dermatodea_contig12607:1496..1850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12607 1497..1850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12607.1610.1prot_S-dermatodea_contig12607.1610.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12607 308..1850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12607.1610.1

>prot_S-dermatodea_contig12607.1610.1 ID=prot_S-dermatodea_contig12607.1610.1|Name=mRNA_S-dermatodea_contig12607.1610.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=230bp
IRESHAQSSGAGAARQKLFCMAQAWITEVSMEVNAGEPSGIRPPPPPPPF
AVPPPPGIQPLDTSPSPPAPALDTAANVTAAPAAPPGSASGFYQDPFASY
TQYGAQQYPDPQWTSGYFGAYNSYNSSFPQQHQGYAGQNFQGYGGFHDPQ
QYAQAYPTQQWAGYAGIPHAQGAQQQFASQVQAYAVQPPQPFGQQQYLPT
PATPATVSQQMQPPLPAEVAPGTLAPLPPL
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mRNA from alignment at S-dermatodea_contig12607:308..1850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12607.1610.1 ID=mRNA_S-dermatodea_contig12607.1610.1|Name=mRNA_S-dermatodea_contig12607.1610.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1543bp|location=Sequence derived from alignment at S-dermatodea_contig12607:308..1850+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTAGGGAGTCGCACGCTCAAAGCTCGGGTGCAGGAGCTGCACGGCAGAA
GCTGTTCTGTATGGCGCAAGCGTGGATTACTGAGGTGAGTATGGAGGTGA
ATGCGGGTGAACCCTCTGGGATACGTCCTCCTCCACCTCCGCCACCTTTC
GCTGTCCCGCCCCCTCCTGGCATTCAGCCTCTGGACACGAGTCCATCTCC
ACCTGCACCTGCTCTAGACACTGCCGCGAACGTTACTGCGGCGCCGGCCG
CGCCGCCAGGATCGGCGTCCGGGTTTTACCAGGACCCCTTCGCTTCTTAC
ACCCAGTACGGTGCGCAACAGTATCCAGATCCGCAGGTGAGAGAGCTGGG
CCTTATTGCTGTACCTTGTGATACGATACGGCAAGGTTATTGTTTGTTGT
ACACAGCACCCGCCGTAACTCCACACATAGCACTTTGAAACACTCACTCT
TGTCTTCTCTTGAATATGATGTCGTCGAGTAATCATTATTGTATGATACA
GACGATATACTACCGCAGGCAGGCGCAGGGTGAGCTTGGGAAGGGTGTGC
AAGGCTCTCTGAAATTACGAGGGGTGTCGGTCGCCTGCGGTCACAGCAAT
GCTGTCCCACGCTCAGTTCCTAACCTTGCGCCTGCTTTTAACCGTATATT
CATGGAACCCGTTCCCCATGTCGCCAAAGTCCTTTTGACCGCCGGGGGGG
GCAGTGCGAGTTCTCATTTGCGCTACCACGGCCCAGGTACTACTTTCTCT
TTGGAAAAAGACCTATTATATACTAGTATATAATATATAATTTCCAAAGT
ACTTACTGCTGTAAAGCTCGCCAAATTTGTTGATTTGTTACTTTGTTTTG
AACACTATTATCTTATTATGCCAGCCATTGATGCCAGCCGACAACCCCTG
CTTCCCTGGGGCTCCGCTTCAAACACGCCTCACTACGTGCCAGCCGGCGG
TCTAAACAGGGGACTACAAGTACTTCCAAAAGGGTTTTAATAGAGCTAAT
CCAGTATGTTCACCTCGCGCAACCGAGTACAGCAGTTGTACACACTGTCT
CTATACCTGGTGAATGCCCCTAGTCTCAGTATCGTATCATATTTAATAAA
ATGTTATTGCTGACTTGCATCGAAGTACTTGTATGTGGCAACCTACACCG
GCACCCTTCACGCTTCACGCACTTGTTTTCCGTCACCAGTGGACCTCGGG
GTACTTCGGAGCTTACAATTCCTACAACAGCAGCTTCCCTCAGCAGCATC
AGGGCTACGCTGGTCAAAATTTCCAGGGATACGGCGGCTTTCACGACCCG
CAGCAGTACGCCCAGGCGTACCCAACACAGCAGTGGGCAGGGTACGCCGG
CATACCCCATGCCCAGGGTGCTCAACAGCAGTTTGCATCACAAGTTCAAG
CATATGCAGTCCAGCCTCCTCAACCGTTCGGCCAACAACAATACCTGCCG
ACTCCAGCGACGCCCGCAACCGTCTCCCAACAAATGCAGCCACCGTTACC
AGCAGAGGTAGCGCCAGGTACTCTGGCACCGTTGCCGCCGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12607:308..1850+

>mRNA_S-dermatodea_contig12607.1610.1 ID=mRNA_S-dermatodea_contig12607.1610.1|Name=mRNA_S-dermatodea_contig12607.1610.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at S-dermatodea_contig12607:308..1850+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTAGGGAGTCGCACGCTCAAAGCTCGGGTGCAGGAGCTGCACGGCAGAA
GCTGTTCTGTATGGCGCAAGCGTGGATTACTGAGGTGAGTATGGAGGTGA
ATGCGGGTGAACCCTCTGGGATACGTCCTCCTCCACCTCCGCCACCTTTC
GCTGTCCCGCCCCCTCCTGGCATTCAGCCTCTGGACACGAGTCCATCTCC
ACCTGCACCTGCTCTAGACACTGCCGCGAACGTTACTGCGGCGCCGGCCG
CGCCGCCAGGATCGGCGTCCGGGTTTTACCAGGACCCCTTCGCTTCTTAC
ACCCAGTACGGTGCGCAACAGTATCCAGATCCGCAGATTAGGGAGTCGCA
CGCTCAAAGCTCGGGTGCAGGAGCTGCACGGCAGAAGCTGTTCTGTATGG
CGCAAGCGTGGATTACTGAGGTGAGTATGGAGGTGAATGCGGGTGAACCC
TCTGGGATACGTCCTCCTCCACCTCCGCCACCTTTCGCTGTCCCGCCCCC
TCCTGGCATTCAGCCTCTGGACACGAGTCCATCTCCACCTGCACCTGCTC
TAGACACTGCCGCGAACGTTACTGCGGCGCCGGCCGCGCCGCCAGGATCG
GCGTCCGGGTTTTACCAGGACCCCTTCGCTTCTTACACCCAGTACGGTGC
GCAACAGTATCCAGATCCGCAGTGGACCTCGGGGTACTTCGGAGCTTACA
ATTCCTACAACAGCAGCTTCCCTCAGCAGCATCAGGGCTACGCTGGTCAA
AATTTCCAGGGATACGGCGGCTTTCACGACCCGCAGCAGTACGCCCAGGC
GTACCCAACACAGCAGTGGGCAGGGTACGCCGGCATACCCCATGCCCAGG
GTGCTCAACAGCAGTTTGCATCACAAGTTCAAGCATATGCAGTCCAGCCT
CCTCAACCGTTCGGCCAACAACAATACCTGCCGACTCCAGCGACGCCCGC
AACCGTCTCCCAACAAATGCAGCCACCGTTACCAGCAGAGGTAGCGCCAG
GTACTCTGGCACCGTTGCCGCCGCTGTGGACCTCGGGGTACTTCGGAGCT
TACAATTCCTACAACAGCAGCTTCCCTCAGCAGCATCAGGGCTACGCTGG
TCAAAATTTCCAGGGATACGGCGGCTTTCACGACCCGCAGCAGTACGCCC
AGGCGTACCCAACACAGCAGTGGGCAGGGTACGCCGGCATACCCCATGCC
CAGGGTGCTCAACAGCAGTTTGCATCACAAGTTCAAGCATATGCAGTCCA
GCCTCCTCAACCGTTCGGCCAACAACAATACCTGCCGACTCCAGCGACGC
CCGCAACCGTCTCCCAACAAATGCAGCCACCGTTACCAGCAGAGGTAGCG
CCAGGTACTCTGGCACCGTTGCCGCCGCTG
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